T. Sulea

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Exhaustive search and solvated interaction energy (SIE) for virtual screening and affinity prediction

Traian Sulea, Enrico O. Purisima, Hervé Hogues, 2012, Journal of Computer-Aided Molecular Design.

Binding symmetry and surface flexibility mediate antibody self-association

E. Purisima, T. Sulea, Hervé Hogues, 2019, mAbs.

Comparative molecular field analysis of protein tyrosine phosphatase low-molecular-weight substrates

E. Purisima, T. Sulea, 1998 .

Catalytic Mechanism of Heparinase II Investigated by Site-directed Mutagenesis and the Crystal Structure with Its Substrate*

Robert J Linhardt, Traian Sulea, Miroslaw Cygler, 2010, The Journal of Biological Chemistry.

Role of the non‐hypervariable FR3 D‐E loop in single‐domain antibody recognition of haptens and carbohydrates

T. Sulea, Kevin A. Henry, C. MacKenzie, 2019, Journal of molecular recognition : JMR.

A Rational Engineering Strategy for Designing Protein A-Binding Camelid Single-Domain Antibodies

E. Purisima, T. Sulea, Kevin A. Henry, 2016, PloS one.

The solvated interaction energy method for scoring binding affinities.

Traian Sulea, Enrico O. Purisima, E. Purisima, 2012, Methods in molecular biology.

Small-Molecule Inhibitors of the Pseudaminic Acid Biosynthetic Pathway: Targeting Motility as a Key Bacterial Virulence Factor

E. Purisima, R. Ménard, T. Sulea, 2014, Antimicrobial Agents and Chemotherapy.

Binding site‐based classification of coronaviral papain‐like proteases†

E. Purisima, R. Ménard, T. Sulea, 2005, Proteins.

Binding mechanism of a de novo coiled coil complex elucidated from surface forces measurements.

E. Purisima, T. Sulea, B. Liberelle, 2020, Journal of colloid and interface science.

Solvation models: theory and validation.

Traian Sulea, Enrico O Purisima, E. Purisima, 2014, Current pharmaceutical design.

The Papain-Like Protease from the Severe Acute Respiratory Syndrome Coronavirus Is a Deubiquitinating Enzyme

R. Ménard, T. Sulea, H. Lindner, 2005, Journal of Virology.

Crystal Structure of TDP-Fucosamine Acetyltransferase (WecD) from Escherichia coli, an Enzyme Required for Enterobacterial Common Antigen Synthesis

T. Sulea, A. Matte, E. Rangarajan, 2006, Journal of bacteriology.

Binding and functional profiling of antibody mutants guides selection of optimal candidates as antibody drug conjugates

M. Jaramillo, M. O’Connor-McCourt, T. Sulea, 2019, PloS one.

Structural aspects of recently discovered viral deubiquitinating activities

R. Ménard, T. Sulea, H. Lindner, 2006, Biological chemistry.

Cathepsins X and B can be differentiated through their respective mono- and dipeptidyl carboxypeptidase activities.

E. Purisima, R. Ménard, T. Sulea, 2001, Biochemistry.

Calculation of Ionic Bridge Contributions to Homospecific Interactions Mediated by Proteoglycans

Z. Simon, T. Sulea, BioChem Press, 2002 .

Enhanced anti-metastatic bioactivity of an IGF-TRAP re-engineered to improve physicochemical properties

T. Sulea, J. Baardsnes, J. Frystyk, 2018, Scientific Reports.

Contribution of active site residues to substrate hydrolysis by USP2: insights into catalysis by ubiquitin specific proteases.

Traian Sulea, Robert Ménard, Qizhi Cui, 2011, Biochemistry.

Design of noncovalent inhibitors of human cathepsin L. From the 96-residue proregion to optimized tripeptides.

E. Purisima, R. Ménard, Y. Konishi, 2002, Journal of medicinal chemistry.

Site‐directed mutagenesis of the type II TGF‐β receptor indicates a ligand‐binding site distinct from that of the type II activin receptor

M. O’Connor-McCourt, T. Sulea, A. Guimond, 2002, FEBS letters.

Therapeutic Discovery Engineering and Therapeutic Application of Single-Chain Bivalent TGF-b Family Traps

M. O’Connor-McCourt, A. Lenferink, C. Collins, 2012 .

Crystal Structure of StaL, a Glycopeptide Antibiotic Sulfotransferase from Streptomyces toyocaensis*

T. Sulea, A. Matte, R. Shi, 2007, Journal of Biological Chemistry.

Coevolved Canonical Loops Conformations of Single-Domain Antibodies: A Tale of Three Pockets Playing Musical Chairs

Christopher R. Corbeil, E. Purisima, T. Sulea, 2022, Frontiers in Immunology.

Structure-based engineering of pH-dependent antibody binding for selective targeting of solid-tumor microenvironment

Christopher R. Corbeil, E. Purisima, M. Jaramillo, 2019, mAbs.

An accurate TMT-based approach to quantify and model lysine susceptibility to conjugation via N-hydroxysuccinimide esters in a monoclonal antibody

Christopher R. Corbeil, E. Purisima, T. Sulea, 2018, Scientific Reports.

Programmable Attenuation of Antigenic Sensitivity for a Nanobody-Based EGFR Chimeric Antigen Receptor Through Hinge Domain Truncation

T. Sulea, Kevin A. Henry, S. Maclean, 2022, Frontiers in Immunology.

Prosomatostatin is proteolytically processed at the amino terminal segment by subtilase SKI-1

N. Seidah, T. Sulea, Y. Patel, 2004, Regulatory Peptides.

Structurally unique interaction of RBD-like and PH domains is crucial for yeast pheromone signaling

T. Sulea, M. Whiteway, J. Baardsnes, 2013, Molecular biology of the cell.

Brain Delivery of IGF1R5, a Single-Domain Antibody Targeting Insulin-like Growth Factor-1 Receptor

T. Sulea, E. Brunette, H. van Faassen, 2022, Pharmaceutics.

Antibody mutations favoring pH‐dependent binding in solid tumor microenvironments: Insights from large‐scale structure‐based calculations

Christopher R. Corbeil, E. Purisima, T. Sulea, 2022, Proteins.

Binding the atypical RA domain of Ste50p to the unfolded Opy2p cytoplasmic tail is essential for the high-osmolarity glycerol pathway.

T. Sulea, M. Whiteway, I. Ekiel, 2009, Molecular biology of the cell.

The adaptor protein Ste50 directly modulates yeast MAPK signaling specificity through differential connections of its RA domain

T. Sulea, M. Whiteway, Cunle Wu, 2019, Molecular biology of the cell.

An engineered TGF-β monomer that functions as a dominant negative to block TGF-β signaling

A. Hinck, T. Sulea, Alexander B. Taylor, 2019 .

CRYSTAL STRUCTURE OF METHANOBACTERIUM THERMAOAUTOTROPHICUM PHOSPHORIBOSYL-AMP

T. Sulea, J. Schrag, V. Davisson, 2005 .

Crystal structure of Methanobacterium thermoautotrophicum phosphoribosyl-AMP cyclohydrolase HisI.

T. Sulea, J. Schrag, M. Cygler, 2005, Biochemistry.

Enhanced antibody-antigen structure prediction from molecular docking using AlphaFold2

Christopher R. Corbeil, T. Sulea, F. Gaudreault, 2022, bioRxiv.

A glyco-engineering approach for site-specific conjugation to Fab glycans

M. Jaramillo, T. Sulea, J. Kelly, 2022, mAbs.

Application of Assisted Design of Antibody and Protein Therapeutics (ADAPT) improves efficacy of a Clostridium difficile toxin A single-domain antibody

E. Purisima, T. Sulea, J. Tanha, 2018, Scientific Reports.

Assisted Design of Antibody and Protein Therapeutics (ADAPT)

E. Purisima, M. Jaramillo, M. O’Connor-McCourt, 2017, PloS one.

Deubiquitination, a New Function of the Severe Acute Respiratory Syndrome Coronavirus Papain-Like Protease?

E. Purisima, R. Ménard, T. Sulea, 2005, Journal of Virology.

Structure-based dual affinity optimization of a SARS-CoV-1/2 cross-reactive single-domain antibody

T. Sulea, M. Parat, J. Baardsnes, 2022, PloS one.

Evolutionary Reshaping of Fungal Mating Pathway Scaffold Proteins

T. Sulea, M. Whiteway, D. Dignard, 2011, mBio.

Antigenic Sensitivity of Membrane-Proximal Targeting Chimeric Antigen Receptors can be Fine-Tuned through Hinge Truncation

T. Sulea, Kevin A. Henry, S. Maclean, 2021 .

Fine Molecular Tuning of Chimeric Antigen Receptors through Hinge Length Optimization

T. Sulea, Kevin A. Henry, S. Maclean, 2020, bioRxiv.

Hydrogen-deuterium exchange mass spectrometry reveals three unique binding responses of mAbs directed to the catalytic domain of hCAIX

S. C. Chafe, A. Lenferink, S. Dedhar, 2021, mAbs.

Bridging structural biology and genetics by computational methods: An investigation into how the R774C mutation in the AR gene can result in complete androgen insensitivity syndrome

E. Purisima, G. Batist, T. Sulea, 2003, Human mutation.

The Structure of Chondroitin B Lyase Complexed with Glycosaminoglycan Oligosaccharides Unravels a Calcium-dependent Catalytic Machinery*

Robert J Linhardt, Traian Sulea, Rahul Raman, 2004, Journal of Biological Chemistry.

Solvated Interaction Energy (SIE) for Scoring Protein-Ligand Binding Affinities. 2. Benchmark in the CSAR-2010 Scoring Exercise

Traian Sulea, Enrico O. Purisima, Qizhi Cui, 2011, J. Chem. Inf. Model..

Anticorps anti-siglec-15

T. Sulea, M. Filion, M. Stuible, 2013 .

Engineering and Therapeutic Application of Single-Chain Bivalent TGF-β Family Traps

M. O’Connor-McCourt, A. Lenferink, C. Collins, 2012, Molecular Cancer Therapeutics.

An engineered transforming growth factor β (TGF-β) monomer that functions as a dominant negative to block TGF-β signaling

A. Hinck, T. Sulea, P. Hart, 2017, The Journal of Biological Chemistry.

ProPOSE: Direct Exhaustive Protein-Protein Docking with Side Chain Flexibility.

Christopher R. Corbeil, Traian Sulea, Hervé Hogues, 2018, Journal of chemical theory and computation.

Human cathepsin X: A cysteine protease with unique carboxypeptidase activity.

E. Purisima, R. Ménard, T. Sulea, 1999, Biochemistry.

Characterization of a Pseudomonad 2-Nitrobenzoate Nitroreductase and Its Catabolic Pathway-Associated 2-Hydroxylaminobenzoate Mutase and a Chemoreceptor Involved in 2-Nitrobenzoate Chemotaxis

T. Sulea, P. Lau, K. Rankin, 2007, Journal of bacteriology.

Specificity determinants of human cathepsin s revealed by crystal structures of complexes.

Traian Sulea, Miroslaw Cygler, Robert Ménard, 2003, Biochemistry.

The propeptide of cruzipain − a potent selective inhibitor of the trypanosomal enzymes cruzipain and brucipain, and of the human enzyme cathepsin F

R. Ménard, T. Sulea, J. Scharfstein, 2007, The FEBS journal.

Comparison of the Minimal Steric Difference (MTD) and Comparative Molecular Field Analysis (CoMFA) Methods for Analysis of Binding of Steroids to Carrier Proteins

Tudor I. Oprea, Traian Sulea, Zeno Simon, 1993 .

versus nurture in two highly enantioselective esterases from Bacillus cereus and Thermoanaerobacter

T. Sulea, A. Imura, P. Lau, 2019 .

MTD-ADJ: A multiconformational minimal topologic difference for determining bioactive conformers using adjusted biological activities

Tudor I. Oprea, Traian Sulea, Zeno Simon, 1998, J. Comput. Aided Mol. Des..

Multiconformational Minimal Steric Difference. Structure‐Acetylcholinesterase Hydrolysis Rates Relations for Acetic Acid Esters

Tudor I. Oprea, Traian Sulea, Zeno Simon, 1993 .

Nature versus nurture in two highly enantioselective esterases from Bacillus cereus and Thermoanaerobacter tengcongensis

T. Sulea, A. Imura, P. Lau, 2009, Microbial biotechnology.

The crystal structure of the formiminotransferase domain of formiminotransferase-cyclodeaminase: implications for substrate channeling in a bifunctional enzyme.

E. Purisima, R. Mackenzie, T. Sulea, 2000, Structure.

Full-length cDNA of human cathepsin F predicts the presence of a cystatin domain at the N-terminus of the cysteine protease zymogen.

R. Ménard, T. Sulea, D. K. Nägler, 1999, Biochemical and biophysical research communications.

Abstract 4688: AVID200: a novel computationally-designed TGF beta trap promoting anti-tumor T cell activity

M. O’Connor-McCourt, A. Lenferink, C. Collins, 2017 .

Serum albumin‐binding VHHs with variable pH sensitivities enable tailored half‐life extension of biologics

T. Sulea, Kevin A. Henry, C. MacKenzie, 2020, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Carboxy-monopeptidase substrate specificity of human cathepsin X.

E. Purisima, R. Ménard, T. Sulea, 2005, Biochemical and biophysical research communications.

Human Cathepsin X

E. Purisima, R. Ménard, T. Sulea, 2002 .

Solvated Interaction Energy (SIE) for Scoring Protein-Ligand Binding Affinities, 1. Exploring the Parameter Space

Imran Siddiqi, Marwen Naïm, Sathesh Bhat, 2007, J. Chem. Inf. Model..

Assessment of Solvated Interaction Energy Function for Ranking Antibody-Antigen Binding Affinities

Christopher R. Corbeil, Traian Sulea, Enrico O. Purisima, 2016, J. Chem. Inf. Model..

Sulfonation of glycopeptide antibiotics by sulfotransferase StaL depends on conformational flexibility of aglycone scaffold

T. Sulea, R. Shi, M. Cygler, 2012, Proceedings of the National Academy of Sciences.

Probing the acyl‐binding pocket of aminoacylase‐1

R. Ménard, T. Sulea, H. Lindner, 2006, Biochemistry.

Mapping of putative binding sites on the ectodomain of the type II TGF‐β receptor by scanning‐deletion mutagenesis and knowledge‐based modeling

M. O’Connor-McCourt, T. Sulea, A. Guimond, 1999, FEBS letters.

Dioxin-Type Activity for Polyhalogenated Arylic Derivatives. A QSAR Model Based on MTD-Method

Traian Sulea, Zeno Simon, Ludovic Kurunczi, 1995 .

A Different Method for Steric Field Evaluation in CoMFA Improves Model Robustness

Tudor I. Oprea, Sorel Muresan, Traian Sulea, 1997, J. Chem. Inf. Comput. Sci..

High incidence of ubiquitin‐like domains in human ubiquitin‐specific proteases

Traian Sulea, Robert Ménard, R. Ménard, 2007, Proteins.

Modeling of the bacterial luciferase‐flavin mononucleotide complex combining flexible docking with structure‐activity data

E. Purisima, T. Sulea, R. Szittner, 2001, Protein science : a publication of the Protein Society.

Predicting hydration free energies of polychlorinated aromatic compounds from the SAMPL-3 data set with FiSH and LIE models

Traian Sulea, Enrico O. Purisima, E. Purisima, 2012, Journal of Computer-Aided Molecular Design.

Rapid prediction of solvation free energy. 3. Application to the SAMPL2 challenge

Christopher R. Corbeil, Traian Sulea, Enrico O. Purisima, 2010, J. Comput. Aided Mol. Des..

Molecular dynamics-solvated interaction energy studies of protein-protein interactions: the MP1-p14 scaffolding complex.

Marwen Naïm, Traian Sulea, Miroslaw Cygler, 2008, Journal of molecular biology.

Improvement of the Thermostability and Activity of a Pectate Lyase by Single Amino Acid Substitutions, Using a Strategy Based on Melting-Temperature-Guided Sequence Alignment

T. Sulea, M. Cygler, P. Lau, 2007, Applied and Environmental Microbiology.

Structural Studies of Trypanosoma brucei RNA Editing Ligases and Their Binding Partner Proteins.

E. Purisima, T. Sulea, R. Salavati, 2016, Biochemistry.

Abstract 1467: AB-16B5, a therapeutic monoclonal antibody against human clusterin that blocks the epithelial-to-mesenchymal transition

M. O’Connor-McCourt, A. Lenferink, T. Sulea, 2010 .

Profiling charge complementarity and selectivity for binding at the protein surface.

Traian Sulea, Enrico O Purisima, E. Purisima, 2003, Biophysical journal.

On the transferability of hydration‐parametrized continuum electrostatics models to solvated binding calculations

Kathryn N. Rankin, Traian Sulea, Enrico O. Purisima, 2003, J. Comput. Chem..

Structure determination and prediction: A study on human Tom20

T. Sulea, E. Schleiff, 1999 .

An accurate TMT-based approach to quantify and model lysine susceptibility to conjugation via N-hydroxysuccinimide esters in a monoclonal antibody

E. Purisima, T. Sulea, C. Corbeil, 2018, Scientific Reports.

Identification of a functional site on the type I TGF‐β receptor by mutational analysis of its ectodomain

M. O’Connor-McCourt, T. Sulea, A. Guimond, 2002, FEBS letters.

Abstract 1759: AVID200, a highly potent TGF-beta trap, exhibits optimal isoform selectivity for enhancing anti-tumor T-cell activity, without promoting metastasis or cardiotoxicity

M. O’Connor-McCourt, A. Lenferink, T. Sulea, 2018 .

Structure and active site residues of PglD, an N-acetyltransferase from the bacillosamine synthetic pathway required for N-glycan synthesis in Campylobacter jejuni.

T. Sulea, A. Matte, M. Cygler, 2008, Biochemistry.

Structural and Functional Analysis of Campylobacter jejuni PseG

Allan Matte, Traian Sulea, Miroslaw Cygler, 2009, The Journal of Biological Chemistry.

Exploring rigid-backbone protein docking in biologics discovery: a test using the DARPin scaffold.

E. Purisima, T. Sulea, Hervé Hogues, 2023, Frontiers in molecular biosciences.

Humanization of Camelid Single-Domain Antibodies.

T. Sulea, 2022, Methods in molecular biology.

Selective Inhibition of USP7

R. Ménard, T. Sulea, 2012, Chemistry & Biology.

Exhaustive docking and solvated interaction energy scoring: lessons learned from the SAMPL4 challenge

Traian Sulea, Enrico O. Purisima, Hervé Hogues, 2014, Journal of Computer-Aided Molecular Design.

Redesigning an antibody H3 loop by virtual screening of a small library of human germline-derived sequences

Christopher R. Corbeil, Traian Sulea, Enrico O. Purisima, 2021, Scientific Reports.

Rapid prediction of solvation free energy. 3. Application to the SAMPL2 challenge

Christopher R. Corbeil, E. Purisima, T. Sulea, 2010, J. Comput. Aided Mol. Des..

Structure and function of the glycopeptide N-methyltransferase MtfA, a tool for the biosynthesis of modified glycopeptide antibiotics.

B. Zakeri, T. Sulea, A. Matte, 2009, Chemistry & biology.

Nonpolar interactions of thrombin S' subsites with its bivalent inhibitor: methyl scan of the inhibitor linker.

E. Purisima, Y. Konishi, T. Sulea, 1997, Biochemistry.

Cathepsins X and B Display Distinct Activity Profiles That Can Be Exploited for Inhibitor Design

R. Ménard, T. Sulea, P. Lachance, 2001, Biological chemistry.

Solvated interaction energy: from small-molecule to antibody drug design

Christopher R. Corbeil, E. Purisima, T. Sulea, 2023, Frontiers in Molecular Biosciences.

The electroconformational space of the β-adrenergic receptor: A molecular modelling study of β-agonists

Tudor I. Oprea, S. Muresan, Z. Simon, 1993 .

Molecular dynamics-solvated interaction energy studies of protein-protein interactions: the MP1-p14 scaffolding complex.

E. Purisima, T. Sulea, J. Schrag, 2008, Journal of molecular biology.

Binding pose and affinity prediction in the 2016 D3R Grand Challenge 2 using the Wilma-SIE method

Christopher R. Corbeil, Traian Sulea, Enrico O. Purisima, 2017, Journal of Computer-Aided Molecular Design.

An engineered transforming growth factor β (TGF-β) monomer that functions as a dominant negative to block TGF-β signaling

A. Hinck, T. Sulea, C. Hinck, 2017, The Journal of Biological Chemistry.

Binding the atypical RA domain of Ste50p to the unfolded Opy2p cytoplasmic tail is essential for the high-osmolarity glycerol pathway.

T. Sulea, M. Whiteway, I. Ekiel, 2009, Molecular biology of the cell.

Roles of dimerization domain residues in binding and catalysis by aminoacylase-1.

R. Ménard, T. Sulea, H. Lindner, 2005, Biochemistry.