I. K. Jordan

发表

Conservation and coevolution in the scale-free human gene coexpression network.

E. Koonin, Y. Wolf, I. K. Jordan, 2004, Molecular biology and evolution.

Lineage-specific gene expansions in bacterial and archaeal genomes.

E V Koonin, E. Koonin, Y. Wolf, 2001, Genome research.

Transposable element polymorphisms recapitulate human evolution

I. K. Jordan, L. Rishishwar, Carlos E. Tellez Villa, 2015, Mobile DNA.

Implications of human evolution and admixture for mitochondrial replacement therapy

I. K. Jordan, L. Rishishwar, Lavanya Rishishwar, 2017, BMC Genomics.

Purifying and directional selection in overlapping prokaryotic genes.

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2002, Trends in genetics : TIG.

Chromatin signature discovery via histone modification profile alignments

Jianrong Wang, I. K. Jordan, V. Lunyak, 2012, Nucleic acids research.

Origin and Evolution of Human microRNAs From Transposable Elements

I. K. Jordan, L. Mariño-Ramírez, J. Piriyapongsa, 2007, Genetics.

Multiple independent evolutionary solutions to core histone gene regulation

D. Landsman, I. K. Jordan, L. Mariño-Ramírez, 2006, Genome Biology.

Essential genes are more evolutionarily conserved than are nonessential genes in bacteria.

E. Koonin, Y. Wolf, I. Rogozin, 2002, Genome research.

Genomic demography: a life-history analysis of transposable element evolution

D. Promislow, I. K. Jordan, J. McDonald, 1999, Proceedings of the Royal Society of London. Series B: Biological Sciences.

Transposable element activity, genome regulation and human health.

I. K. Jordan, Lu Wang, I. Jordan, 2018, Current opinion in genetics & development.

Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters

P. Yunker, I. K. Jordan, L. Rishishwar, 2019, Genome Biology.

Genome‐wide map of Apn1 binding sites under oxidative stress in Saccharomyces cerevisiae

Andrew B. Conley, I. K. Jordan, A. Conley, 2017, Yeast.

A universal trend of amino acid gain and loss in protein evolution

E. Koonin, Y. Wolf, I. Adzhubei, 2005, Nature.

Human Retrotransposon Insertion Polymorphisms Are Associated with Health and Disease via Gene Regulatory Phenotypes

Emily T. Norris, I. K. Jordan, Lu Wang, 2017, Front. Microbiol..

Evidence for positive selection on recent human transposable element insertions.

S. Yi, Jianrong Wang, I. K. Jordan, 2018, Gene.

Origin of a substantial fraction of human regulatory sequences from transposable elements.

G. Glazko, E. Koonin, I. Rogozin, 2003, Trends in genetics : TIG.

Transposable elements donate lineage-specific regulatory sequences to host genomes

D. Landsman, I. K. Jordan, L. Mariño-Ramírez, 2005, Cytogenetic and Genome Research.

Patterns of Transposable Element Expression and Insertion in Cancer

Evan A. Clayton, Jianrong Wang, I. K. Jordan, 2016, Front. Mol. Biosci..

Human population-specific gene expression and transcriptional network modification with polymorphic transposable elements

I. K. Jordan, L. Mariño-Ramírez, L. Rishishwar, 2016, Nucleic acids research.

Population and clinical genetics of human transposable elements in the (post) genomic era

Evan A. Clayton, I. K. Jordan, L. Mariño-Ramírez, 2017, Mobile genetic elements.

On the presence and role of human gene-body DNA methylation

I. King Jordan, Andrew B. Conley, Victoria V. Lunyak, 2012, Oncotarget.

Olivier Bodenreider, Panayiotis Tsaparas, Eugene V Koonin, 2006, BMC Evolutionary Biology.

Constant relative rate of protein evolution and detection of functional diversification among bacterial, archaeal and eukaryotic proteins

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2001, Genome Biology.

Epigenetic histone modifications of human transposable elements: genome defense versus exaptation

Ahsan Huda, I King Jordan, Leonardo Mariño-Ramírez, 2010, Mobile DNA.

Microevolutionary genomics of bacteria.

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2002, Theoretical population biology.

Epigenetic Regulation of Mammalian Genomes by Transposable Elements

Ahsan Huda, I King Jordan, I. K. Jordan, 2009, Annals of the New York Academy of Sciences.

Epigenetic regulation of transposable element derived human gene promoters.

Andrew B. Conley, I. K. Jordan, N. Bowen, 2011, Gene.

Tumor suppressor genes and allele-specific expression: mechanisms and significance

Evan A. Clayton, I. K. Jordan, J. McDonald, 2020, Oncotarget.

Genomic characterization and computational phenotyping of nitrogen-fixing bacteria isolated from Colombian sugarcane fields

Lina C Valderrama-Aguirre, I. K. Jordan, L. Rishishwar, 2019, Scientific Reports.

Ancestry effects on type 2 diabetes genetic risk inference in Hispanic/Latino populations

Andrew B. Conley, I. K. Jordan, L. Rishishwar, 2020, BMC Medical Genetics.

Using Single-Nucleotide Polymorphisms To Discriminate Disease-Associated from Carried Genomes of Neisseria meningitidis

Nitya V. Sharma, I. K. Jordan, B. Harcourt, 2011, Journal of bacteriology.

Repetitive DNA elements, nucleosome binding and human gene expression.

D. Landsman, I. K. Jordan, L. Mariño-Ramírez, 2009, Gene.

Lateral Gene Transfer in a Heavy Metal-Contaminated-Groundwater Microbial Community

Christopher L. Hemme, A. Arkin, Jizhong Zhou, 2016, mBio.

Genome analysis stringMLST : a fast k-mer based tool for multilocus sequence typing

Anuj Gupta, I. K. Jordan, L. Rishishwar, 2016 .

Genome Sequences of 15 Klebsiella sp. Isolates from Sugarcane Fields in Colombia’s Cauca Valley

Lina C Valderrama-Aguirre, I. K. Jordan, L. Mariño-Ramírez, 2018, Genome Announcements.

Whole-Genome Sequences of 26 Vibrio cholerae Isolates

I. K. Jordan, L. Mariño-Ramírez, L. Rishishwar, 2016, Genome Announcements.

A Nationwide Screen of Carbapenem-Resistant Klebsiella pneumoniae Reveals an Isolate with Enhanced Virulence and Clinically Undetected Colistin Heteroresistance

I. K. Jordan, G. Dumyati, E. Burd, 2019, Antimicrobial Agents and Chemotherapy.

Genome Sequence of the Mycobacterium colombiense Type Strain, CECT 3035

D. Landsman, I. K. Jordan, L. Mariño-Ramírez, 2011, Journal of bacteriology.

Assortative Mating on Ancestry-Variant Traits in Admixed Latin American Populations

Emily T. Norris, I. K. Jordan, L. Rishishwar, 2019, Frontiers in genetics.

Phylogenetic perspective reveals abundant Ty1/Ty2 hybrid elements in the Saccharomyces cerevisiae genome.

I. K. Jordan, J. McDonald, I. Jordan, 1999, Molecular biology and evolution.

The α-Mannosidases: Phylogeny and Adaptive Diversification

I. K. Jordan, D. S. Gonzalez, I. Jordan, 2000 .

Transposable element derived DNaseI-hypersensitive sites in the human genome

I. K. Jordan, L. Mariño-Ramírez, M. Lenardo, 2006, Biology Direct.

A method for visualization of “omic” datasets for sphingolipid metabolism to predict potentially interesting differences[S]

I. K. Jordan, A. Merrill, Samuel L. Kelly, 2011, Journal of Lipid Research.

Genome analysis Retroviral promoters in the human genome

Andrew B. Conley, I. K. Jordan, J. Piriyapongsa, 2008 .

Mutations in SORL1 and MTHFDL1 possibly contribute to the development of Alzheimer’s disease in a multigenerational Colombian Family

Emily T. Norris, I. K. Jordan, L. Rishishwar, 2022, PloS one.

Relating the Disease Mutation Spectrum to the Evolution of the Cystic Fibrosis Transmembrane Conductance Regulator (CFTR)

S. Harvey, I. K. Jordan, N. Varghese, 2012, PloS one.

Identification of a tumor-suppressive human-specific microRNA within the FHIT tumor-suppressor gene.

W. Curran, I. K. Jordan, J. Piriyapongsa, 2014, Cancer research.

Transcription factor binding sites are highly enriched within microRNA precursor sequences

Andrew B. Conley, N. Smalheiser, I. K. Jordan, 2011, Biology Direct.

Effects of genetic ancestry and socioeconomic deprivation on ethnic differences in serum creatinine.

Andrew B. Conley, I. K. Jordan, L. Mariño-Ramírez, 2022, Gene.

Association of Genetic Ancestry and Molecular Signatures with Cancer Survival Disparities: A Pan-Cancer Analysis

I. K. Jordan, L. Mariño-Ramírez, L. Rishishwar, 2022, Cancer research.

Copper chaperones in bacteria: association with copper-transporting ATPases.

Michael Y. Galperin, D. Natale, I. K. Jordan, 2000, Trends in biochemical sciences.

Comorbidities and Ethnic Health Disparities in the UK Biobank

Emily T. Norris, I. K. Jordan, L. Mariño-Ramírez, 2022, AMIA.

BIOINFORMATICS DISCOVERY NOTE Retroviral promoters in the human genome

I. K. Jordan, J. Piriyapongsa, A. Conley, 2008 .

Identification of transcription factor binding sites derived from transposable element sequences using ChIP-seq.

I. K. Jordan, A. Conley, I. Jordan, 2010, Methods in molecular biology.

Inhibition of activated pericentromeric SINE/Alu repeat transcription in senescent human adult stem cells reinstates self-renewal

E. Halperin, M. Rosenfeld, Jianrong Wang, 2011, Cell cycle.

Chocó, Colombia: a hotspot of human biodiversity.

Andrew B. Conley, Emily T. Norris, F. Vannberg, 2016, Revista biodiversidad neotropical.

The Impact of Ethnicity and Genetic Ancestry on Disease Prevalence and Risk in Colombia

I. K. Jordan, L. Mariño-Ramírez, L. Rishishwar, 2021, Frontiers in Genetics.

Genome Defense Against Transposable Elements and the Origins of Regulatory RNA

I. K. Jordan, W. Miller, I. Jordan, 2008 .

Characterization of clinical and environmental isolates of Vibrio cidicii sp. nov., a close relative of Vibrio navarrensis.

Y. Boucher, I. K. Jordan, Rebecca J. Case, 2016, International journal of systematic and evolutionary microbiology.

New Histoplasma Diagnostic Assays Designed via Whole Genome Comparisons

F. Vannberg, I. K. Jordan, L. Rishishwar, 2021, Journal of fungi.

Genomic Diversity of Azole-Resistant Aspergillus fumigatus in the United States

I. K. Jordan, E. Berkow, L. Rishishwar, 2021, mBio.

Diazotroph Community Characterization via a High-Throughput nifH Amplicon Sequencing and Analysis Pipeline

Lina C Valderrama-Aguirre, I. K. Jordan, L. Rishishwar, 2017, Applied and Environmental Microbiology.

A Family of Human MicroRNA Genes from Miniature Inverted-Repeat Transposable Elements

I. King Jordan, Jittima Piriyapongsa, I. K. Jordan, 2007, PloS one.

Mammalian-wide interspersed repeat (MIR)-derived enhancers and the regulation of human gene expression

Andrew B. Conley, Jianrong Wang, I. K. Jordan, 2014, Mobile DNA.

Prediction of Transposable Element Derived Enhancers Using Chromatin Modification Profiles

I. K. Jordan, L. Mariño-Ramírez, N. Bowen, 2011, PloS one.

Transposable elements and the evolution of eukaryotic complexity.

I King Jordan, I. K. Jordan, N. Bowen, 2002, Current issues in molecular biology.

Retroviral promoters in the human genome

I. King Jordan, Andrew B. Conley, Jittima Piriyapongsa, 2008, Bioinform..

Origin and evolution of the cystic fibrosis transmembrane regulator protein R domain.

Andrew B. Conley, Jianrong Wang, I. K. Jordan, 2013, Gene.

Human cis natural antisense transcripts initiated by transposable elements.

Andrew B. Conley, I. K. Jordan, W. Miller, 2008, Trends in genetics : TIG.

Evolutionary significance of gene expression divergence.

Eugene V Koonin, I King Jordan, Leonardo Mariño-Ramírez, 2005, Gene.

Molecular evolution of the Paramyxoviridae and Rhabdoviridae multiple-protein-encoding P gene.

M. A. McClure, I. K. Jordan, B. Sutter, 2000, Molecular biology and evolution.

Interelement Selection in the Regulatory Region of the copia Retrotransposon

I. K. Jordan, J. McDonald, I. Jordan, 1998, Journal of Molecular Evolution.

Evidence for the Role of Recombination in the Regulatory Evolution of Saccharomyces cerevisiae Ty Elements

I. K. Jordan, J. McDonald, I. Jordan, 1998, Journal of Molecular Evolution.

Analysis of transposable element sequences using CENSOR and RepeatMasker.

Ahsan Huda, I King Jordan, I. K. Jordan, 2009, Methods in molecular biology.

Genome-wide prediction and analysis of human chromatin boundary elements

Jianrong Wang, I. K. Jordan, V. Lunyak, 2011, Nucleic acids research.

Dual coding of siRNAs and miRNAs by plant transposable elements.

I. K. Jordan, J. Piriyapongsa, I. Jordan, 2008, RNA.

Duplicated genes evolve slower than singletons despite the initial rate increase

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2004, BMC Evolutionary Biology.

No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2003, BMC Evolutionary Biology.

Opposing activities of oncogenic MIR17HG and tumor suppressive MIR100HG clusters and their gene targets regulate replicative senescence in human adult stem cells

Mary F. Lopez, I. K. Jordan, V. Lunyak, 2017, npj Aging and Mechanisms of Disease.

Evaluating the protein coding potential of exonized transposable element sequences

M. Borodovsky, I. K. Jordan, J. Piriyapongsa, 2007, Biology Direct.

Endogenous retroviruses of the chicken genome

I. K. Jordan, J. McDonald, Nalini Polavarapu, 2008, Biology Direct.

Deconvolving Human Evolutionary History: Using Network-Based Approaches to Better Understand Our Past

Andrew B. Conley, Shashwat Deepali Nagar, I. King Jordan, 2021 .

Genetic ancestry, admixture and health determinants in Latin America

Emily T. Norris, I. K. Jordan, L. Mariño-Ramírez, 2018, BMC Genomics.

Epigenetics Components of Aging in the Central Nervous System

I. K. Jordan, V. Lunyak, Yueqiang Zhao, 2013, Neurotherapeutics.

Evidence for the recent horizontal transfer of long terminal repeat retrotransposon.

Lilya V. Matyunina, I. K. Jordan, J. McDonald, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Protein evolution: Causes of trends in amino-acid gain and loss (Reply)

E. Koonin, Y. Wolf, I. Adzhubei, 2006, Nature.

Evolution of the copia retrotransposon in the Drosophila melanogaster species subgroup.

I. K. Jordan, J. McDonald, I. Jordan, 1998, Molecular biology and evolution.

Benchmarking computational tools for polymorphic transposable element detection

Leonardo Mariño-Ramírez, I. King Jordan, Lavanya Rishishwar, 2016, Briefings Bioinform..

Transposable element polymorphisms recapitulate human evolution

I. K. Jordan, L. Rishishwar, Carlos E. Tellez Villa, 2015, Mobile DNA.

Influence of genetic ancestry and socioeconomic status on type 2 diabetes in the diverse Colombian populations of Chocó and Antioquia

Andrew B. Conley, Emily T. Norris, I. K. Jordan, 2017, Scientific Reports.

Correction: No simple dependence between protein evolution rate and the number of protein-protein interactions: only the most prolific interactors tend to evolve slowly

Eugene V Koonin, I King Jordan, Yuri I Wolf, 2003, BMC Evolutionary Biology.

Gene conversions in genes encoding outer-membrane proteins in H. pylori and C. pneumoniae.

E. Koonin, K. Makarova, Y. I. Wolf, 2001, Trends in genetics : TIG.

A computational genomics pipeline for prokaryotic sequencing projects

Pushkala Jayaraman, I. King Jordan, Lee S. Katz, 2010, Bioinform..

APOBEC4, a New Member of the AID/APOBEC Family of Polynucleotide (Deoxy)Cytidine Deaminases Predicted by Computational Analysis

E. Koonin, I. Rogozin, I. K. Jordan, 2005, Cell cycle.

A Gibbs sampling strategy applied to the mapping of ambiguous short-sequence tags

Jianrong Wang, I. King Jordan, Ahsan Huda, 2010, Bioinform..

Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe.

V. Wood, J. Epstein, I. K. Jordan, 2003, Genome research.

A Biologically Active Family of Human Endogenous Retroviruses Evolved from an Ancient Inactive Lineage

I. K. Jordan, J. McDonald, I. Jordan, 2002 .

Exaptation of protein coding sequences from transposable elements.

I. K. Jordan, N. Bowen, I. Jordan, 2007, Genome dynamics.

The Phenotypic Consequences of Genetic Divergence between Admixed Latin American Populations: Antioquia and Chocó, Colombia

Andrew B. Conley, I. K. Jordan, L. Rishishwar, 2020, Genome biology and evolution.

Transcriptional Activity, Chromosomal Distribution and Expression Effects of Transposable Elements in Coffea Genomes

I. King Jordan, Pierre Marraccini, Lu Wang, 2013, PloS one.

Comparative Human Genomics

E. Koonin, I. K. Jordan, I. Jordan, 2008 .

Naturally occurring variation in copia expression is due to both element (cis) and host (trans) regulatory variation.

I. K. Jordan, J. McDonald, L. V. Matyunina, 1996, Proceedings of the National Academy of Sciences of the United States of America.

Dasheng and RIRE2. A Nonautonomous Long Terminal Repeat Element and Its Putative Autonomous Partner in the Rice Genome1

S. Wessler, I. K. Jordan, Ning Jiang, 2002, Plant Physiology.

Comparative genomics and evolutionary dynamics of Saccharomyces cerevisiae Ty elements

John F. McDonald, I. King Jordan, I. K. Jordan, 2004, Genetica.

Comparative genomics and evolutionary dynamics of Saccharomyces cerevisiae Ty elements.

I. K. Jordan, J. McDonald, I. Jordan, 2000 .

Evolutionary rates and patterns for human transcription factor binding sites derived from repetitive DNA

D. Landsman, I. K. Jordan, L. Mariño-Ramírez, 2008, BMC Genomics.

Sequence and structural aspects of functional diversification in class I-mannosidase evolution

I. King Jordan, Daniel S. Gonzalez, G. Reid Bishop, 2001, Bioinform..

Do human transposable element small RNAs serve primarily as genome defenders or genome regulators?

Andrew B. Conley, I. K. Jordan, V. Lunyak, 2012, Mobile genetic elements.

MIR retrotransposon sequences provide insulators to the human genome

Jianrong Wang, I. K. Jordan, J. Gómez-Skarmeta, 2015, Proceedings of the National Academy of Sciences.

Compound cis-regulatory elements with both boundary and enhancer sequences in the human genome

Jianrong Wang, I. King Jordan, Andrew B. Conley, 2013, Bioinform..

Depletion of nuclear histone H2A variants is associated with chronic DNA damage signaling upon drug-evoked senescence of human somatic cells

A. Prakash, Mary F. Lopez, I. K. Jordan, 2012, Aging.

Protein interactions with piALU RNA indicates putative participation of retroRNA in the cell cycle, DNA repair and chromatin assembly

Mary F. Lopez, Jianrong Wang, I. K. Jordan, 2012, Mobile genetic elements.

GlobAl Distribution of GEnetic Traits (GADGET) web server: polygenic trait scores worldwide

I. King Jordan, Lavanya Rishishwar, Aroon T. Chande, 2018, Nucleic Acids Res..

The Role of Interelement Selection in Saccharomyces cerevisiae Ty Element Evolution

I. K. Jordan, J. McDonald, I. Jordan, 1999, Journal of Molecular Evolution.

Tempo and mode of Ty element evolution in Saccharomyces cerevisiae.

I. K. Jordan, J. McDonald, I. Jordan, 1999, Genetics.

Genetic ancestry, admixture and health determinants in Latin America

Andrew B. Conley, Emily T. Norris, I. K. Jordan, 2018, BMC Genomics.

Population Pharmacogenomics for Precision Public Health in Colombia

I. King Jordan, Lavanya Rishishwar, Andrew B. Conley, 2019, Front. Genet..

Native American admixture recapitulates population-specific migration and settlement of the continental United States

Andrew B. Conley, I. K. Jordan, A. Conley, 2019, PLoS genetics.

Meningococcus genome informatics platform: a system for analyzing multilocus sequence typing data

Xin Wang, Robert T. Taylor, I. King Jordan, 2009, Nucleic Acids Res..

Sequence and structural aspects of functional diversification in class I alpha-mannosidase evolution.

I. K. Jordan, G. Bishop, D. S. Gonzalez, 2001, Bioinformatics.

A Phylogenetic Perspective on Molecular Epidemiology

I. K. Jordan, L. Mayer, Xin Wang, 2015 .

Chapter 29 A Phylogenetic Perspective on Molecular Epidemiology

I. K. Jordan, L. Mayer, Xin Wang, 2014 .

Evolutionary tinkering with transposable elements.

I King Jordan, I. K. Jordan, 2006, Proceedings of the National Academy of Sciences of the United States of America.

Cell type-specific termination of transcription by transposable element sequences

Andrew B. Conley, I. K. Jordan, A. Conley, 2012, Mobile DNA.

Flow-dependent epigenetic DNA methylation regulates endothelial gene expression and atherosclerosis.

J. Dunn, H. Jo, I. K. Jordan, 2014, The Journal of clinical investigation.

Transcriptional profiling of interleukin-2-primed human adipose derived mesenchymal stem cells revealed dramatic changes in stem cells response imposed by replicative senescence

I. K. Jordan, Ying Sha, V. Lunyak, 2015, Oncotarget.

Independent Evolution of Heavy Metal-Associated Domains in Copper Chaperones and Copper-Transporting ATPases

Michael Y. Galperin, E. Koonin, D. Natale, 2001, Journal of Molecular Evolution.

A combined evidence Bayesian method for human ancestry inference applied to Afro-Colombians.

B. Vidakovic, I. K. Jordan, A. Conley, 2015, Gene.

A Comparative Analysis of Genetic Ancestry and Admixture in the Colombian Populations of Chocó and Medellín

Andrew B. Conley, Emily T. Norris, I. K. Jordan, 2017, G3: Genes, Genomes, Genetics.

Tu1863 – Differences Among Luminal and Mucosal Microbiota Among Fecal Microbiota Transplant Recipients

I. K. Jordan, A. Chande, C. Kraft, 2019, Gastroenterology.

Neisseria Base: a comparative genomics database for Neisseria meningitidis

Pushkala Jayaraman, I. King Jordan, Lee S. Katz, 2011, Database J. Biol. Databases Curation.

Analysis of Vibrio cholerae genomes identifies new type VI secretion system gene clusters

P. Yunker, I. K. Jordan, B. Hammer, 2019, Genome biology.

Colistin Heteroresistance Is Largely Undetected among Carbapenem-Resistant Enterobacterales in the United States

Andrew B. Conley, I. K. Jordan, G. Dumyati, 2021, mBio.

Acute Genotoxic Stress-Induced Senescence in Human Mesenchymal Cells Drives a Unique Composition of Senescence Messaging Secretome (SMS)

Alex, I. K. Jordan, V. Lunyak, 2017 .

Population Genomics of Reduced Vancomycin Susceptibility in Staphylococcus aureus

I. K. Jordan, C. Kraft, Lavanya Rishishwar, 2016, mSphere.

Natural selection governs local, but not global, evolutionary gene coexpression networks in Caenorhabditis elegans

I. King Jordan, Lee S. Katz, Dee R. Denver, 2008, BMC Syst. Biol..

Horizontal Gene Transfer and Prokaryotic Genome Evolution

E. Koonin, I. K. Jordan, 2004 .

Cryptic Native American ancestry recapitulates population-specific migration and settlement of the continental United States

Andrew B. Conley, I. K. Jordan, A. Conley, 2018, bioRxiv.

Evolutionary Genomics of Gene Expression

I. K. Jordan, Leonardo Mariñno-Ramírez, I. Jordan, 2007 .

Endogenous Retroviruses and the Epigenome

Andrew B. Conley, I. K. Jordan, A. Conley, 2012 .

RampDB: a web application and database for the exploration and prediction of receptor activity modifying protein interactions

I. King Jordan, Nadav Topaz, Nazia Mojib, 2017, Database J. Biol. Databases Curation.

A c-Myc regulatory subnetwork from human transposable element sequences.

Jianrong Wang, I. K. Jordan, L. Mariño-Ramírez, 2009, Molecular bioSystems.

Computational analysis of transposable element sequences.

I. K. Jordan, N. Bowen, 2004, Methods in molecular biology.

Effect of the Transposable Element Environment of Human Genes on Gene Length and Expression

M. Gundapuneni, I. K. Jordan, L. Mariño-Ramírez, 2011, Genome biology and evolution.

stringMLST: a fast k-mer based tool for multilocus sequence typing

Anuj Gupta, I. King Jordan, Lavanya Rishishwar, 2017, Bioinform..

Genome Sequences for Five Strains of the Emerging Pathogen Haemophilus haemolyticus

Gabriel J Mitchell, Andrew B. Conley, Pushkar R. Pande, 2011, Journal of bacteriology.

Co-evolutionary Rates of Functionally Related Yeast Genes

Olivier Bodenreider, I. King Jordan, Leonardo Mariño-Ramírez, 2006, Evolutionary bioinformatics online.

Ethnic disparities in mortality and group-specific risk factors in the UK Biobank

Andrew B. Conley, Emily T. Norris, I. K. Jordan, 2023, PLOS global public health.

Comparative Genomic Analysis of Haemophilus haemolyticus and Nontypeable Haemophilus influenzae and a New Testing Scheme for Their Discrimination

Gabriel J Mitchell, J. Gilsdorf, I. K. Jordan, 2016, Journal of Clinical Microbiology.

The Columbian Exchange as a source of adaptive introgression in human populations

I. K. Jordan, I. Jordan, 2016, Biology Direct.

Comparing Genetic and Socioenvironmental Contributions to Ethnic Differences in C-Reactive Protein

Andrew B. Conley, I. K. Jordan, L. Mariño-Ramírez, 2021, Frontiers in Genetics.

Genome Sequences for Six Rhodanobacter Strains, Isolated from Soils and the Terrestrial Subsurface, with Variable Denitrification Capabilities

S. Brooks, N. Ivanova, I. K. Jordan, 2012, Journal of bacteriology.

Investigation of hypertension and type 2 diabetes as risk factors for dementia in the All of Us cohort

Andrea H. Ramirez, E. Boerwinkle, S. Schully, 2022, Scientific Reports.

Rye: genetic ancestry inference at biobank scale

Andrew B. Conley, Emily T. Norris, I. K. Jordan, 2022, bioRxiv.

Analysis of Vibrio cholerae genomes using a novel bioinformatic tool identifies new, active Type VI Secretion System gene clusters

P. Yunker, I. K. Jordan, B. Hammer, 2019, bioRxiv.

Assortative Mating on Ancestry-Variant Traits in Admixed Latin American Populations

Andrew B. Conley, Emily T. Norris, I. K. Jordan, 2017, bioRxiv.

The physiological and anatomical demonstration of functionally selective parasympathetic ganglia located in discrete fat pads on the feline myocardium.

I. K. Jordan, P. Phan, T. A. Johnson, 1995, Journal of the autonomic nervous system.

Transcriptome Analysis Identifies Tumor Immune Microenvironment Signaling Networks Supporting Metastatic Castration-Resistant Prostate Cancer

S. Varambally, J. Lillard, I. K. Jordan, 2023, Onco.

Opposing activities of oncogenic MIR17HG and tumor suppressive MIR100HG clusters and their gene targets regulate replicative senescence in human adult stem cells

I. K. Jordan, V. Lunyak, B. Krastins, 2017, npj Aging and Mechanisms of Disease.

Genomic Basis of a Polyagglutinating Isolate of Neisseria meningitidis

Nitya V. Sharma, I. K. Jordan, B. Harcourt, 2012, Journal of bacteriology.

Vitamin D and socioeconomic deprivation mediate COVID-19 ethnic health disparities

Emily T. Norris, I. K. Jordan, L. Mariño-Ramírez, 2021, medRxiv.

Socioeconomic deprivation and genetic ancestry interact to modify type 2 diabetes ethnic disparities in the United Kingdom

I. K. Jordan, L. Mariño-Ramírez, A. Nápoles, 2021, EClinicalMedicine.

Identi fi cation of a Tumor-Suppressive Human-Speci fi c MicroRNA within the FHIT Tumor-Suppressor Gene

W. Curran, I. K. Jordan, J. Piriyapongsa, 2014 .

Population structure and pharmacogenomic risk stratification in the United States

I. K. Jordan, A. Conley, S. Nagar, 2020, BMC Biology.

Microbial Forensics

Hector F. Espitia-Navarro, I. K. Jordan, L. Mayer, 2002, Science.

Genome Sequence-Based Discriminator for Vancomycin-Intermediate Staphylococcus aureus

I. King Jordan, Lavanya Rishishwar, Colleen S. Kraft, 2013, Journal of bacteriology.

aureusmediate Staphylococcus Genome Sequence-Based Discriminator for

I. K. Jordan, R. Petit, C. Kraft, 2014 .

A decade of viral mutations and associated drug resistance in a population of HIV-1+ Puerto Ricans: 2002–2011

I. K. Jordan, N. Boukli, L. Cubano, 2017, PloS one.

An atlas of transposable element-derived alternative splicing in cancer

Evan A. Clayton, I. K. Jordan, J. McDonald, 2020, Philosophical Transactions of the Royal Society B.

The Columbian Exchange as a source of adaptive introgression in human populations

I. K. Jordan, 2016, Biology Direct.

Genome Sequences of Vibrio navarrensis, a Potential Human Pathogen

I. K. Jordan, L. Mariño-Ramírez, L. Katz, 2014, Genome Announcements.

Evaluating the protein coding potential of exonized transposable element sequences.

M. Borodovsky, I. K. Jordan, J. Piriyapongsa, 2007 .

Transposable element derived DNaseI-hypersensitive sites in the human genome

I. K. Jordan, L. Mariño-Ramírez, I. Jordan, 2006 .