A. Tsai

发表

Integration of Mechanistic Immunological Knowledge into a Machine Learning Pipeline Increases Predictive Power

Trevor Hastie, Robert Tibshirani, Martin Becker, 2020, bioRxiv.

An immune clock of human pregnancy

R. Tibshirani, G. Nolan, G. Shaw, 2017, Science Immunology.

Preferential inhibition of adaptive immune system dynamics by glucocorticoids in patients after acute surgical trauma

Nima Aghaeepour, Martin S. Angst, Ramin Fallahzadeh, 2020, Nature Communications.

VoPo leverages cellular heterogeneity for predictive modeling of single-cell data

Ramin Fallahzadeh, Nima Aghaeepour, David K. Stevenson, 2020, Nature Communications.

Multiomic immune clockworks of pregnancy

S. Quake, G. Shaw, N. Aghaeepour, 2020, Seminars in Immunopathology.

Multiomics Characterization of Preterm Birth in Low- and Middle-Income Countries

S. Quake, G. Shaw, J. Stringer, 2020, JAMA network open.

Deep Immune Profiling of an Arginine-Enriched Nutritional Intervention in Patients Undergoing Surgery

G. Nolan, N. Aghaeepour, D. Gaudillière, 2017, The Journal of Immunology.

Differential Dynamics of the Maternal Immune System in Healthy Pregnancy and Preeclampsia

Amy E. Judy, G. Shaw, N. Aghaeepour, 2019, Front. Immunol..

Systemic Immunologic Consequences of Chronic Periodontitis

N. Aghaeepour, D. Gaudillière, J. Helms, 2019, Journal of dental research.

Objective Activity Parameters Track Patient-specific Physical Recovery Trajectories After Surgery and Link With Individual Preoperative Immune States

N. Aghaeepour, J. Huddleston, P. Sultan, 2021, Annals of surgery.

Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19

Garry P. Nolan, N. Aghaeepour, D. Gaudillière, 2022, Cell reports. Medicine.

A year-long immune profile of the systemic response in acute stroke survivors

Nima Aghaeepour, Maarten G Lansberg, Quentin Baca, 2019, Brain : a journal of neurology.

Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19

Garry P. Nolan, N. Aghaeepour, D. Gaudillière, 2022, Cell reports. Medicine.

Integrated trajectories of the maternal metabolome, proteome, and immunome predict labor onset

G. Shaw, N. Aghaeepour, D. Gaudillière, 2021, Science Translational Medicine.

VoPo leverages cellular heterogeneity for predictive modeling of single-cell data

G. Shaw, N. Aghaeepour, D. Gaudillière, 2020, Nature Communications.

Deep single-cell profiling of the systemic immune response to pregnancy Twenty-one pregnant women receiving routine antepartum care at

R. Tibshirani, G. Nolan, G. Shaw, 2017 .

Integrated plasma proteomic and single-cell immune signaling network signatures demarcate mild, moderate, and severe COVID-19

G. Nolan, N. Aghaeepour, D. Gaudillière, 2021, bioRxiv.

Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions

Trevor Hastie, Robert Tibshirani, Ramin Fallahzadeh, 2020, Nature Machine Intelligence.

Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy

Bruno Agard, Robert Tibshirani, Nima Aghaeepour, 2018, Bioinform..

A Peripheral Immune Signature of Labor Induction

N. Aghaeepour, D. Stevenson, Y. Blumenfeld, 2021, Frontiers in Immunology.

Single-Cell Analysis of the Neonatal Immune System Across the Gestational Age Continuum

N. Aghaeepour, D. Stevenson, A. Tsai, 2021, Frontiers in Immunology.

Measuring the human immune response to surgery: multiomics for the prediction of postoperative outcomes

N. Aghaeepour, D. Gaudillière, C. Kin, 2021, Current opinion in critical care.

Human immune system adaptations to simulated microgravity revealed by single-cell mass cytometry

N. Aghaeepour, D. Gaudillière, A. Tsai, 2021, Scientific Reports.

The Role of Mass Cytometry in Early Detection, Diagnosis, and Treatment of Head and Neck Cancer

D. Gaudillière, A. Tsai, B. Gaudillière, 2021 .

Neuroimaging is the new “spatial omic”: multi-omic approaches to neuro-inflammation and immuno-thrombosis in acute ischemic stroke

M. Sirota, J. Olivot, G. Albers, 2023, Seminars in Immunopathology.

Integrated Single-cell and Plasma Proteomic Modeling to Predict Surgical Site Complications: A Prospective Cohort Study

N. Aghaeepour, D. Gaudillière, A. Morris, 2021, Annals of surgery.

Stabl: sparse and reliable biomarker discovery in predictive modeling of high-dimensional omic data

N. Aghaeepour, D. Gaudillière, A. Tsai, 2023, Research square.