P. Romby

P. François, P. Romby, I. Caldelari, 2014, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

A novel approach to introduce site-directed specific cross-links within RNA-protein complexes. Application to the Escherichia coli threonyl-tRNA synthetase/translational operator complex.

C. Ehresmann, P. Romby, M. Springer, 1995, European journal of biochemistry.

Translational regulation of the Escherichia coli threonyl-tRNA synthetase gene: structural and functional importance of the thrS operator domains.

M. Grunberg‐Manago, C. Ehresmann, P. Romby, 1993, Biochimie.

Domains of the Escherichia coli threonyl-tRNA synthetase translational operator and their relation to threonine tRNA isoacceptors.

M. Grunberg‐Manago, C. Ehresmann, P. Romby, 1992, Journal of Molecular Biology.

Higher-order structure of domain III in Escherichia coli 16S ribosomal RNA, 30S subunit and 70S ribosome.

J. Bachellerie, J. Ebel, C. Ehresmann, 1987, Biochimie.

Probing RNA structure and RNA-ligand complexes with chemical probes.

P. Romby, C. Brunel, Christine Brunel, 2000, Methods in enzymology.

A PNPase Dependent CRISPR System in Listeria

M. Touchon, E. Rocha, E. Westhof, 2014, PLoS genetics.

Complex regulation of gamma-hemolysin expression impacts S. aureus virulence

F. Vandenesch, Y. Benito, P. Romby, 2022, bioRxiv.

Modulatory Role of Modified Nucleotides in RNA Loop-Loop Interaction

P. Romby, C. Houssier, R. Marquet, 1998 .

Three-dimensional model of Escherichia coli ribosomal 5 S RNA as deduced from structure probing in solution and computer modeling.

E. Westhof, C. Ehresmann, P. Romby, 1991, Journal of molecular biology.

The Solution Structure of Spinach Chloroplast and of Xenopus Laevis Oocyte 5S rRNAs

E. Westhof, R. Mache, C. Ehresmann, 1991 .

Ribosomal 5S RNA from Xenopus laevis oocytes: conformation and interaction with transcription factor IIIA.

E. Westhof, C. Ehresmann, P. Romby, 1990, Biochimie.

Computer modeling from solution data of spinach chloroplast and of Xenopus laevis somatic and oocyte 5 S rRNAs.

E Westhof, E. Westhof, J. Ebel, 1989, Journal of molecular biology.

Characterization of the lead(II)-induced cleavages in tRNAs in solution and effect of the Y-base removal in yeast tRNAPhe.

J. Ebel, R. Giegé, P. Romby, 1988, Biochemistry.

Interaction of tRNAPhe and tRNAVal with aminoacyl-tRNA synthetases. A chemical modification study.

V. Vlassov, J. Ebel, R. Giegé, 1983, European journal of biochemistry.

Chapter 16 Staphylococcus aureus Endoribonuclease III

F. Vandenesch, S. Boisset, P. Romby, 2008 .

Staphylococcus aureus endoribonuclease III purification and properties.

F. Vandenesch, S. Boisset, P. Romby, 2008, Methods in enzymology.

Abundant class of non-coding RNA regulates development in the social amoeba Dictyostelium discoideum

U. Hellman, P. Romby, F. Söderbom, 2011, RNA biology.

Staphylococcus aureus RNAIII Binds to Two Distant Regions of coa mRNA to Arrest Translation and Promote mRNA Degradation

F. Vandenesch, S. Boisset, B. Masquida, 2010, PLoS pathogens.

RNA Modifications in Pathogenic Bacteria: Impact on Host Adaptation and Virulence

S. Marzi, P. Romby, Laura Antoine, 2021, Genes.

RNA switches regulate initiation of translation in bacteria

S. Marzi, P. Romby, C. Chevalier, 2008, Biological chemistry.

The RNA structurome: high-throughput probing

Eric Westhof, Pascale Romby, E. Westhof, 2010, Nature Methods.

Regulatory RNAs as mediators of virulence gene expression in bacteria.

C. Ehresmann, P. Romby, E. Huntzinger, 2006, Handbook of experimental pharmacology.

Global Regulatory Functions of the Staphylococcus aureus Endoribonuclease III in Gene Expression

J. Vogel, F. Vandenesch, P. Romby, 2012, PLoS genetics.

When Ribonucleases Come into Play in Pathogens: A Survey of Gram-Positive Bacteria

P. Romby, E. Lioliou, B. Jester, 2012, International journal of microbiology.

Use of lead(II) to probe the structure of large RNA's. Conformation of the 3' terminal domain of E. coli 16S rRNA and its involvement in building the tRNA binding sites.

J. Ebel, C. Ehresmann, P. Romby, 1989, Journal of biomolecular structure & dynamics.

Escherichia coli ribosomal protein S1 enhances the kinetics of ribosome biogenesis and RNA decay

B. Luisi, S. Marzi, P. Romby, 2021, bioRxiv.

A glimpse on Staphylococcus aureus translation machinery and its control

S. Marzi, P. Romby, M. Yusupov, 2016, Molecular Biology.

Ribosomal initiation complexes probed by toeprinting and effect of trans-acting translational regulators in bacteria.

S. Marzi, P. Romby, M. Yusupov, 2009, Methods in molecular biology.

A structural view of translation initiation in bacteria

S. Marzi, P. Romby, M. Yusupov, 2009, Cellular and Molecular Life Sciences.

28 Translational Control in Prokaryotes

P. Romby, M. Springer, 2007 .

Translational Operator of mRNA on the Ribosome: How Repressor Proteins Exclude Ribosome Binding

Pascale Romby, Chantal Ehresmann, Bernard Ehresmann, 2005, Science.

Bacterial translational control at atomic resolution.

P. Romby, M. Springer, 2003, Trends in genetics : TIG.

The expression of E.coli threonyl‐tRNA synthetase is regulated at the translational level by symmetrical operator‐repressor interactions.

C. Ehresmann, P. Romby, M. Springer, 1996, The EMBO journal.

The power of cooperation: Experimental and computational approaches in the functional characterization of bacterial sRNAs

S. Marzi, P. Romby, W. Hess, 2019, Molecular microbiology.

The modular structure of Escherichia coli threonyl‐tRNA synthetase as both an enzyme and a regulator of gene expression

E. Westhof, A. Torres-Larios, C. Ehresmann, 2003, Molecular microbiology.

The role of mRNA structure in translational control in bacteria

S. Marzi, P. Romby, T. Geissmann, 2009, RNA biology.

Topography of the Escherichia coli ribosomal 30S subunit-initiation factor 2 complex.

M. Grunberg‐Manago, J. Ebel, C. Ehresmann, 1991, Biochimie.

Four-way junctions in antisense RNA-mRNA complexes involved in plasmid replication control: a common theme?

E. Westhof, E. Wagner, C. Ehresmann, 2001, Journal of molecular biology.

The conformation of the initiator tRNA and of the 16S rRNA from Escherichia coli during the formation of the 30S initiation complex.

M. Grunberg‐Manago, E. Westhof, J. Ebel, 1990, Biochimica et biophysica acta.

Traditional Chemical Mapping of RNA Structure In Vitro and In Vivo.

S. Marzi, P. Romby, P. Fechter, 2016, Methods in molecular biology.

The Crc global regulator binds to an unpaired A-rich motif at the Pseudomonas putida alkS mRNA coding sequence and inhibits translation initiation

S. Marzi, P. Romby, F. Rojo, 2009, Nucleic acids research.

Quand le fil de l’ARN messager s’entortille et bloque sa traduction…

S. Marzi, P. Romby, B. Klaholz, 2007 .

A defense-offense multi-layered regulatory switch in a pathogenic bacterium

H. Margalit, Y. Altuvia, O. Biham, 2015, Nucleic acids research.

Staphylococcus aureus RNAIII and Its Regulon Link Quorum Sensing, Stress Responses, Metabolic Adaptation, and Regulation of Virulence Gene Expression.

F. Vandenesch, S. Marzi, P. Romby, 2016, Annual review of microbiology.

A Non-Coding RNA Promotes Bacterial Persistence and Decreases Virulence by Regulating a Regulator in Staphylococcus aureus

Pascale Romby, Sandrine Boisset, F. Vandenesch, 2014, PLoS pathogens.

The Staphylococcus aureus RNome and Its Commitment to Virulence

B. Felden, P. Bouloc, F. Vandenesch, 2011, PLoS pathogens.

Cartography of Methicillin-Resistant S. aureus Transcripts: Detection, Orientation and Temporal Expression during Growth Phase and Stress Conditions

David Hernández, P. François, L. Farinelli, 2010, PloS one.

The 3′UTR‐derived sRNA RsaG coordinates redox homeostasis and metabolism adaptation in response to glucose‐6‐phosphate uptake in Staphylococcus aureus

F. Vandenesch, S. Marzi, P. Romby, 2021, Molecular microbiology.

A multifaceted small RNA modulates gene expression upon glucose limitation in Staphylococcus aureus

P. François, F. Vandenesch, S. Marzi, 2019, The EMBO journal.

A dual sRNA in Staphylococcus aureus induces a metabolic switch responding to glucose consumption

P. François, S. Marzi, P. Romby, 2018, bioRxiv.

Various checkpoints prevent the synthesis of Staphylococcus aureus peptidoglycan hydrolase LytM in the stationary growth phase

F. Vandenesch, S. Boisset, Sarah Dubrac, 2016, RNA biology.

Probing the structure of RNAIII, the Staphylococcus aureus agr regulatory RNA, and identification of the RNA domain involved in repression of protein A expression.

F. Vandenesch, Y. Benito, G. Lina, 2000, RNA.

Translational Feedback Control in E.Coli : The Role of tRNA Thr and tRNA Thr -Like Structures in the Operator of the Gene for Threonyl-tRNA Synthetase

M. Grunberg‐Manago, J. Ebel, C. Ehresmann, 1990 .

A method to map changes in bacterial surface composition induced by regulatory RNAs in Escherichia coli and Staphylococcus aureus.

E. Wagner, F. Vandenesch, S. Boisset, 2014, Biochimie.

Mutations in Residues Involved in Zinc Binding in the Catalytic Site of Escherichia coli Threonyl-tRNA Synthetase Confer a Dominant Lethal Phenotype

P. Romby, M. Springer, J. Caillet, 2007, Journal of bacteriology.

Stabilization of Ribosomal RNA of the Small Subunit by Spermidine in Staphylococcus aureus

S. Marzi, P. Romby, M. Yusupov, 2021, Frontiers in Molecular Biosciences.

Topography of the Ternary EF-Tu/GTP/Phe-tRNAPhe Complex as Studied by Crosslinking and Limited Proteolysis

C. Ehresmann, P. Romby, B. Ehresmann, 1993 .

Yeast tRNAAsp-aspartyl-tRNA synthetase: the crystalline complex.

B. Lorber, J. Ebel, R. Giegé, 1983, Journal of biomolecular structure & dynamics.

Lead(II) as a probe for investigating RNA structure in vivo.

E. Wagner, P. Romby, M. Lindell, 2002, RNA.

Binding of Escherichia coli ribosomal protein S8 to 16 S rRNA. A model for the interaction and the tertiary structure of the RNA binding site.

E. Westhof, J. Ebel, C. Ehresmann, 1987, Journal of molecular biology.

RNA mimicry, a decoy for regulatory proteins

S. Marzi, P. Romby, 2012, Molecular microbiology.

In vivo mapping of RNA-RNA interactions in Staphylococcus aureus using the endoribonuclease III.

H. Margalit, Y. Altuvia, P. Romby, 2013, Methods.

A Nitric Oxide Regulated Small RNA Controls Expression of Genes Involved in Redox Homeostasis in Bacillus subtilis

C. Condon, P. Romby, E. Lioliou, 2015, PLoS genetics.

Characterization and footprint analysis of two 5S rRNA binding proteins from spinach chloroplast ribosomes

R. Mache, C. Ehresmann, P. Romby, 1989 .

RsaC sRNA modulates the oxidative stress response of Staphylococcus aureus during manganese starvation

F. Vandenesch, S. Marzi, P. Romby, 2019, Nucleic acids research.

The RNA targetome of Staphylococcus aureus non-coding RNA RsaA: impact on cell surface properties and defense mechanisms

F. Vandenesch, S. Marzi, P. Romby, 2017, Nucleic acids research.

MS2-Affinity Purification Coupled with RNA Sequencing in Gram-Positive Bacteria.

P. Romby, É. Massé, I. Caldelari, 2021, Journal of visualized experiments : JoVE.

Probing RNA Structure In Vitro with Enzymes and Chemicals

S. Marzi, P. Romby, E. Lioliou, 2014 .

The relation between catalytic activity and gene regulation in the case of E coli threonyl-tRNA synthetase.

M. Grunberg‐Manago, J. Ebel, C. Ehresmann, 1990, Biochimie.

The Drosophila Modifier of Variegationmodulo Gene Product Binds Specific RNA Sequences at the Nucleolus and Interacts with DNA and Chromatin in a Phosphorylation-dependent Manner*

P. Romby, P Romby, H Bérenger, 1999, The Journal of Biological Chemistry.

Replication control of plasmid R1: disruption of an inhibitory RNA structure that sequesters the repA ribosome‐binding site permits tap‐independent RepA synthesis

E. Wagner, P. Romby, P. Blomberg, 1994, Molecular microbiology.

Transfer RNA–Mediated Editing in Threonyl-tRNA Synthetase The Class II Solution to the Double Discrimination Problem

Pascale Romby, Chantal Ehresmann, Bernard Rees, 2000, Cell.

Probing the phosphates of the Escherichia coli ribosomal 16S RNA in its naked form, in the 30S subunit, and in the 70S ribosome.

J. Ebel, C. Ehresmann, P. Romby, 1989, Biochemistry.

A glimpse on Staphylococcus aureus translation machinery and its control

S. Marzi, P. Romby, M. Yusupov, 2016, Molecular Biology.

Zinc ion mediated amino acid discrimination by threonyl-tRNA synthetase

M. Bovee, C. Francklyn, D. Moras, 2000, Nature Structural Biology.

The translational regulation of threonyl-tRNA synthetase. Functional relationship between the enzyme, the cognate tRNA and the ribosome.

M. Grunberg‐Manago, J. Ebel, C. Ehresmann, 1990, Biochimica et biophysica acta.

The Escherichia coli threonyl‐tRNA synthetase gene contains a split ribosomal binding site interrupted by a hairpin structure that is essential for autoregulation

C. Ehresmann, P. Romby, M. Springer, 1998, Molecular microbiology.

The specificity of translational control switched with transfer RNA identity rules.

M Graffe, J. Dondon, Joel Caillet, 1992, Science.

Translational Control of Gene Expression in E. Coli: The Case of Threonyl-tRNA Synthetase

M. Grunberg‐Manago, J. Ebel, C. Ehresmann, 1989 .

Translational control inE. coli: The case of threonyl-tRNA synthetase

M. Grunberg‐Manago, J. Ebel, C. Ehresmann, 1988, Bioscience reports.

Progression of a loop–loop complex to a four‐way junction is crucial for the activity of a regulatory antisense RNA

E Westhof, E. Westhof, E. Wagner, 2000, The EMBO journal.

High affinity nucleic acid aptamers for streptavidin incorporated into bi-specific capture ligands.

Pascale Romby, Laura Frigotto, P. Romby, 2002, Nucleic acids research.

Antisense RNA Control of Plasmid R1 Replication

E. Wagner, C. Ehresmann, P. Romby, 1997, The Journal of Biological Chemistry.

An antisense/target RNA duplex or a strong intramolecular RNA structure 5' of a translation initiation signal blocks ribosome binding: the case of plasmid R1.

E. Wagner, P. Romby, C. Malmgren, 1996, RNA.

Exploring the complex world of RNA regulation

Pascale Romby, E. Wagner, P. Romby, 2008, Biology of the cell.

Effect of mutations in domain 2 on the structural organization of oocyte 5 S rRNA from Xenopus laevis.

E. Westhof, C. Ehresmann, P. Romby, 1990, Journal of molecular biology.

The tRNA‐like structure of turnip yellow mosaic virus RNA: structural organization of the last 159 nucleotides from the 3′ OH terminus

J. Ebel, C. Florentz, P. Romby, 1982, The EMBO journal.

Structural basis of translational control by Escherichia coli threonyl tRNA synthetase

Pascale Romby, Chantal Ehresmann, Bernard Ehresmann, 2002, Nature Structural Biology.

Binding of initiation factor 2 and initiator tRNA to the Escherichia coli 30S ribosomal subunit induces allosteric transitions in 16S rRNA.

J. Ebel, C. Ehresmann, P. Romby, 1990, Biochemistry.

Yeast Virus-Derived Stimulator of the Innate Immune System Augments the Efficacy of Virus Vector-Based Immunotherapy

G. Hartmann, P. Romby, J. Marchand, 2014, Journal of Virology.

The Expression of Small Regulatory RNAs in Clinical Samples Reflects the Different Life Styles of Staphylococcus aureus in Colonization vs. Infection

F. Vandenesch, Y. Benito, S. Boisset, 2012, PloS one.

Bulged residues promote the progression of a loop-loop interaction to a stable and inhibitory antisense-target RNA complex.

E Westhof, E. Westhof, E. Wagner, 2001, Nucleic acids research.

An unusual structure formed by antisense-target RNA binding involves an extended kissing complex with a four-way junction and a side-by-side helical alignment.

E. Westhof, E. Wagner, C. Ehresmann, 2000, RNA.

Structural studies on site-directed mutants of domain 3 of Xenopus laevis oocyte 5 S ribosomal RNA.

E. Westhof, C. Ehresmann, P. Romby, 1991, Journal of molecular biology.

Involvement of "hinge" nucleotides of Xenopus laevis 5 S rRNA in the RNA structural organization and in the binding of transcription factor TFIIIA.

E. Westhof, C. Ehresmann, P. Romby, 1991, Journal of molecular biology.

sRNA-mediated activation of gene expression by inhibition of 5'-3’ exonucleolytic mRNA degradation

C. Condon, P. Romby, A. Helfer, 2017, eLife.

Topography of the Escherichia coli initiation factor 2/fMet-tRNA(f)(Met) complex as studied by cross-linking.

M. Grunberg‐Manago, C. Ehresmann, P. Romby, 1996, Biochemistry.

Complex Regulation of Gamma-Hemolysin Expression Impacts Staphylococcus aureus Virulence

F. Vandenesch, Y. Benito, P. Romby, 2023, Microbiology spectrum.

Various checkpoints prevent the synthesis of Staphylococcus aureus peptidoglycan hydrolase LytM in the stationary growth phase

F. Vandenesch, S. Boisset, Sarah Dubrac, 2016, RNA biology.

Complete Genome Sequence and Annotation of the Staphylococcus aureus Strain HG001

S. Marzi, P. Romby, C. Gaspin, 2017, Genome Announcements.

sRNA and mRNA turnover in Gram-positive bacteria.

C. Condon, P. Romby, Sylvain Durand, 2015, FEMS microbiology reviews.

Ligand-induced Structural Alterations in Human Iron Regulatory Protein-1 Revealed by Protein Footprinting*

M. Hentze, J. Schlegl, C. Ehresmann, 1999, The Journal of Biological Chemistry.

Comparison of the tertiary structure of yeast tRNA(Asp) and tRNA(Phe) in solution. Chemical modification study of the bases.

P. Romby, Richard Giegé, Ph. Dumas, 1987, Journal of molecular biology.