H. Nielsen

发表

Group I introns: Moving in new directions

H. Nielsen, S. Johansen, 2009, RNA biology.

Speciation of a group I intron into a lariat capping ribozyme

E. Westhof, B. Masquida, H. Nielsen, 2014, Proceedings of the National Academy of Sciences.

Accumulation of Stable Full-Length Circular Group I Intron RNAs during Heat-Shock

B. Masquida, H. Nielsen, S. Johansen, 2016, Molecules.

Developmental changes of rRNA ribose methylations in the mouse

J. Cavaille, H. Nielsen, V. Marty, 2020, RNA biology.

Sequence and expression analysis of gaps in human chromosome 20

J. Gorodkin, N. Papadopoulos, A. Silahtaroglu, 2012, Nucleic acids research.

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

Craig L. Zirbel, Christian Höner zu Siederdissen, I. Hofacker, 2015, PloS one.

Sequence and proposed secondary structure of the Tetrahymena thermophila U3-snRNA.

H. Nielsen, J. Engberg, H. Orum, 1993, Nucleic acids research.

Molecular characterization of a new member of the lariat capping twin-ribozyme introns

P. Gardner, B. Masquida, H. Nielsen, 2014, Mobile DNA.

Updating rDNA restriction enzyme maps of Tetrahymena reveals four new intron-containing species.

H. Nielsen, J. Engberg, E. Simon, 1985, The Journal of protozoology.

Reassessment of the involvement of Snord115 in the serotonin 2c receptor pathway in a genetically relevant mouse model

J. Cavaille, H. Nielsen, H. Seitz, 2020, eLife.

The identification and functional annotation of RNA structures conserved in vertebrates

Jan Gorodkin, Christian Garde, Henrik Nielsen, 2017, Genome research.

Ribosomal RNA 2’-O-methylation dynamics impact cell fate decisions

H. Nielsen, A. Lund, M. Jansson, 2022, bioRxiv.

RNA 3D Modules in Genome-Wide Predictions of RNA 2D Structure

Craig L. Zirbel, Christian Höner zu Siederdissen, I. Hofacker, 2015, PloS one.

Group I intron ribozymes.

H. Nielsen, 2012, Methods in molecular biology.

Sequencing-based methods for detection and quantitation of ribose methylations in RNA.

H. Nielsen, Nicolai Krogh, N. Krogh, 2019, Methods.

SIRT7-Dependent Deacetylation of Fibrillarin Controls Histone H2A Methylation and rRNA Synthesis during the Cell Cycle.

H. Nielsen, I. Grummt, T. Ruppert, 2018, Cell reports.

Structural organization of the genes encoding the small nuclear RNAs U1 to U6 of Tetrahymena thermophila is very similar to that of plant small nuclear RNA genes.

H. Nielsen, J. Engberg, H. Ørum, 1992, Journal of molecular biology.

DNA from Arctic Human Burials

H. Nielsen, J. Engberg, I. Thuesen, 1994 .

The 23S Ribosomal RNA From Pyrococcus furiosus Is Circularly Permuted

Daniel N. Wilson, H. Nielsen, B. Beckert, 2020, Frontiers in Microbiology.

Profiling of ribose methylations in ribosomal RNA from diffuse large B-cell lymphoma patients for evaluation of ribosomes as drug targets

K. Grønbæk, H. Nielsen, C. Côme, 2020, NAR cancer.

Complete sequence of the extrachromosomal rDNA molecule from the ciliate Tetrahymena thermophila strain B1868VII.

J Engberg, H. Nielsen, J. Engberg, 1990, Nucleic acids research.

Bypassing rRNA methylation by RsmA/Dim1during ribosome maturation in the hyperthermophilic archaeon Nanoarchaeum equitans

S. Douthwaite, H. Nielsen, H. Huber, 2016, Nucleic acids research.

Syddansk Universitet Bypassing rRNA methylation by RsmA / Dim 1 during ribosome maturation in the hyperthermophilic archaeon Nanoarchaeum

S. Douthwaite, H. Nielsen, H. Huber, 2017 .

Bypassing rRNA methylation by RsmA/Dim1during ribosome maturation in the hyperthermophilic archaeon Nanoarchaeum equitans.

S. Douthwaite, H. Nielsen, H. Huber, 2016, Nucleic acids research.

Profiling of 2′-O-Me in human rRNA reveals a subset of fractionally modified positions and provides evidence for ribosome heterogeneity

Anders H. Lund, Henrik Nielsen, H. Nielsen, 2016, Nucleic acids research.

The RNA helicase Dbp7 promotes domain V/VI compaction and stabilization of inter-domain interactions during early 60S assembly

K. Pan, H. Urlaub, H. Nielsen, 2021, Nature Communications.

RNA helicase-mediated regulation of snoRNP dynamics on pre-ribosomes and rRNA 2′-O-methylation

H. Nielsen, M. Bohnsack, Roman Martin, 2021, Nucleic acids research.

Methods for Determination of 2′-O-Me in RNA

H. Nielsen, Nicolai Krogh, K. Andersen, 2016 .

Spliceosomal small nuclear RNAs of Tetrahymena thermophila and some possible snRNA-snRNA base-pairing interactions.

H. Nielsen, J. Engberg, H. Orum, 1991, Journal of molecular biology.

Experimental identification and analysis of macronuclear non-coding RNAs from the ciliate Tetrahymena thermophila

H. Nielsen, K. Andersen, 2011, Nucleic acids research.

Comparison of primary and secondary 26S rRNA structures in twoTetrahymena species: Evidence for a strong evolutionary and structural constraint in expansion segments

H. Nielsen, J. Engberg, G. Lenaers, 1990, Journal of Molecular Evolution.

The ability to form full-length intron RNA circles is a general property of nuclear group I introns.

Henrik Nielsen, Christer Einvik, Peik Haugen, 2003, RNA.

A novel class of nucleolar RNAs from Tetrahymena

H. Nielsen, J. Engberg, H. Ørum, 1992, FEBS letters.

Regulation of translation by site-specific ribosomal RNA methylation

P. Ménard, H. Nielsen, A. Lund, 2021, Nature Structural & Molecular Biology.

Ribosomal RNA methylation induced by MYC regulates translation

P. Ménard, H. Nielsen, J. Andersen, 2020 .

Expression of protein-coding genes embedded in ribosomal DNA

H. Nielsen, S. Johansen, P. Haugen, 2007, Biological chemistry.

Complex group-I introns in nuclear SSU rDNA of red and green algae: evidence of homing-endonuclease pseudogenes in the Bangiophyceae

H. Nielsen, S. Johansen, V. Huss, 1999, Current Genetics.

A natural fast-cleaving branching ribozyme from the amoeboflagellate Naegleria pringsheimi

H. Nielsen, S. Johansen, Yunjia Tang, 2011, RNA biology.

Profiling of ribose methylations in RNA by high-throughput sequencing.

Jan Gorodkin, Henrik Nielsen, Radhakrishnan Sabarinathan, 2014, Angewandte Chemie.

Fractional 2′-O-methylation in the ribosomal RNA of Dictyostelium discoideum supports ribosome heterogeneity in Amoebozoa

H. Nielsen, F. Söderbom, C. Hammann, 2022, Scientific reports.

RiboMeth-seq: Profiling of 2'-O-Me in RNA.

H. Nielsen, Nicolai Krogh, Ulf Birkedal, 2017, Methods in molecular biology.

RRP7A links primary microcephaly to dysfunction of ribosome biogenesis, resorption of primary cilia, and neurogenesis

N. Tommerup, H. Eiberg, L. Larsen, 2020, Nature Communications.

A new RNA branching activity: the GIR1 ribozyme.

H. Nielsen, S. Johansen, 2007, Blood cells, molecules & diseases.

ZAKα Recognizes Stalled Ribosomes through Partially Redundant Sensor Domains.

Dorte B. Bekker-Jensen, J. Olsen, S. Bekker-Jensen, 2020, Molecular cell.

Lariat capping as a tool to manipulate the 5' end of individual yeast mRNA species in vivo.

T. Jensen, H. Nielsen, M. Schmid, 2017, RNA.

In vivo expression of the nucleolar group I intron‐encoded I‐DirI homing endonuclease involves the removal of a spliceosomal intron

H. Nielsen, S. Johansen, A. Vader, 1999, The EMBO journal.

The transcriptional landscape.

Henrik Nielsen, H. Nielsen, 2011, Methods in molecular biology.

The small Cajal body-specific RNA 15 (SCARNA15) directs p53 and redox homeostasis via selective splicing in cancer cells

H. Nielsen, C. Bellodi, M. Cieśla, 2021, NAR cancer.

Phylogenetic evidence for the acquisition of ribosomal RNA introns subsequent to the divergence of some of the major Tetrahymena groups.

M. Sogin, H. Nielsen, J. Engberg, 1986, The EMBO journal.

Optimizing RNA structures by sequence extensions using RNAcop

Peter F. Stadler, Jan Gorodkin, Ivo L. Hofacker, 2015, Nucleic acids research.

The shift from early to late types of ribosomes in zebrafish development involves changes at a subset of rRNA 2′-O-Me sites

H. Nielsen, S. Johansen, I. Babiak, 2020, RNA.

RRP7A links primary microcephaly to radial glial cells and dysfunction of ribosomal biogenesis, neurogenesis and ciliary resorption

N. Tommerup, H. Eiberg, L. Larsen, 2019, bioRxiv.

Positioning Europe for the EPITRANSCRIPTOMICS challenge

Ayelet T. Lamm, Stefan L Ameres, J. Ule, 2018, RNA biology.

Substoichiometric ribose methylations in spliceosomal snRNAs.

Henrik Nielsen, H. Nielsen, C. Geisler, 2017, Organic & biomolecular chemistry.

Functional intron+ and intron- rDNA in the same macronucleus of the ciliate Tetrahymena pigmentosa.

H. Nielsen, J. Engberg, 1985, Biochimica et biophysica acta.

CLONING AND CHARACTERIZATION OF THE GENE ENCODING THE HIGHLY EXPRESSED RIBOSOMAL PROTEIN L3 OF THE CILIATED PROTOZOANTETRAHYMENA THERMOPHILA. EVIDENCE FOR DIFFERENTIAL CODON USAGE IN HIGHLY EXPRESSED GENES

H. Nielsen, J. Engberg, L. Palm, 1999, Cell biology international.

Group I-like ribozymes with a novel core organization perform obligate sequential hydrolytic cleavages at two processing sites.

E Westhof, F. Michel, E. Westhof, 1998, RNA.

Sequence comparison of the rDNA introns from six different species of Tetrahymena.

H. Nielsen, J. Engberg, 1985, Nucleic acids research.

DiGIR1 and NaGIR1: naturally occurring group I-like ribozymes with unique core organization and evolved biological role.

H. Nielsen, S. Johansen, C. Einvik, 2002, Biochimie.

The secondary structure of large-subunit rRNA divergent domains, a marker for protist evolution.

H. Nielsen, J. Engberg, G. Lenaers, 1988, Bio Systems.

Inheritance of the group I rDNA intron in Tetrahymena pigmentosa.

H. Nielsen, J. Engberg, E. Simon, 1992, Developmental genetics.

Making ends meet: a universal driver of large ribosomal subunit biogenesis.

H. Nielsen, M. Bohnsack, A. Henras, 2022, Trends in biochemical sciences.

Tetrahymena thermophila acidic ribosomal protein L37 contains an archaebacterial type of C-terminus.

K. Kristiansen, P. Højrup, H. Nielsen, 1991, Gene.

An intron in a ribosomal protein gene from Tetrahymena

H. Nielsen, J. Engberg, K. Kristiansen, 1986, The EMBO journal.

Intermolecular interaction between a branching ribozyme and associated homing endonuclease mRNA

B. Masquida, H. Nielsen, S. Johansen, 2011, Biological chemistry.

Molecular modelling of the GIR1 branching ribozyme gives new insight into evolution of structurally related ribozymes

Eric Westhof, Steinar D Johansen, Henrik Nielsen, 2008, The EMBO journal.

Re-assessment of the involvement of Snord115 in the serotonin 2C receptor pathway in a genetically relevant mouse model

J. Cavaille, P. Mercier, H. Nielsen, 2020, eLife.

Molecular characterization of a new member of the lariat capping twin-ribozyme introns

P. Gardner, B. Masquida, H. Nielsen, 2014, Mobile DNA.

Knock-Down of a Novel snoRNA in Tetrahymena Reveals a Dual Role in 5.8S rRNA Processing and Generation of a 26S rRNA Fragment

H. Nielsen, K. Andersen, 2018, Biomolecules.

Accumulation of Stable Full-Length Circular Group I Intron RNAs during Heat-Shock

B. Masquida, H. Nielsen, S. Johansen, 2016, Molecules.

Working with RNA.

H. Nielsen, 2011, Methods in molecular biology.

Use of a Lariat Capping Ribozyme to Study Cap Function In Vivo.

H. Nielsen, Nicolai Krogh, Maral Halladjian, 2021, Methods in molecular biology.

The identification and functional annotation of RNA structures conserved in vertebrates

W. L. Ruzzo, Zizhen Yao, J. Gorodkin, 2017, Genome research.

The group I-like ribozyme DiGIR1 mediates alternative processing of pre-rRNA transcripts in Didymium iridis.

H. Nielsen, S. Johansen, A. Vader, 2002, European journal of biochemistry.

Molecular modelling of GIR 1 gives new insight into evolution of structurally related ribozymes

E. Westhof, B. Masquida, H. Nielsen, 2008 .