F. Wagner

发表

CEL-Seq: single-cell RNA-Seq by multiplexed linear amplification.

T. Hashimshony, I. Yanai, F. Wagner, 2012, Cell reports.

Moana: A robust and scalable cell type classification framework for single-cell RNA-Seq data

Florian Wagner, Itai Yanai, I. Yanai, 2018, bioRxiv.

Development and perspectives of scientific services offered by genomic biological resource centres.

Karsten R. Heidtke, F. Wagner, B. Drescher, 2007, Briefings in functional genomics & proteomics.

The XL-mHG test for gene set enrichment

F. Wagner, 2017, PeerJ Prepr..

Systematic Association Mapping Identifies NELL1 as a Novel IBD Disease Gene

K. Huse, Clive M. Onnie, N. Prescott, 2007, PloS one.

GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge

F. Wagner, 2015, PloS one.

GO-PCA: An Unsupervised Method to Explore Biological Heterogeneity Based on Gene Expression and Prior Knowledge

F. Wagner, 2015, bioRxiv.

Correction: Prediction and analysis of the modular structure of cytochrome P450 monooxygenases

F. Wagner, J. Pleiss, M. Widmann, 2012, BMC Structural Biology.

Prediction and analysis of the modular structure of cytochrome P450 monooxygenases

F. Wagner, J. Pleiss, M. Widmann, 2010, BMC Structural Biology.

Genome-wide DNA-mapping of CD34+ cells from patients with myelodysplastic syndrome using 500K SNP arrays identifies significant regions of deletion and uniparental disomy.

E. Thiel, F. Wagner, D. Nowak, 2009, Experimental hematology.

Detection of novel skeletogenesis target genes by comprehensive analysis of a Runx2(-/-) mouse model.

C. Dieterich, P. Robinson, S. Mundlos, 2007, Gene expression patterns : GEP.

Distinct global shifts in genomic binding profiles of limb malformation-associated HOXD13 mutations

P. Robinson, D. Horn, S. Mundlos, 2013, Genome research.

The Laccase Engineering Database: a classification and analysis system for laccases and related multicopper oxidases

Jürgen Pleiss, Rolf D. Schmid, Florian Wagner, 2011, Database J. Biol. Databases Curation.

Widespread Transcriptional Scanning in the Testis Modulates Gene Evolution Rates

J. Boeke, I. Yanai, Maayan Baron, 2020, Cell.

Mutations in Nicotinamide Nucleotide Transhydrogenase (NNT) cause familial glucocorticoid deficiency

F. Wagner, P. Frommolt, P. Nürnberg, 2012, Nature Genetics.

implementation of the RMA method for

Florian Wagner, F. Wagner, 2016 .

K-nearest neighbor smoothing for high-throughput single-cell RNA-Seq data

Florian Wagner, Yun Yan, Itai Yanai, 2017, bioRxiv.

Monet: An open-source Python package for analyzing and integrating scRNA-Seq data using PCA-based latent spaces

Florian Wagner, F. Wagner, 2020, bioRxiv.

Integrating single-cell RNA-Seq with spatial transcriptomics in pancreatic ductal adenocarcinoma using multimodal intersection analysis

I. Yanai, C. Hajdu, Maayan Baron, 2019 .

Accurate denoising of single-cell RNA-Seq data using unbiased principal component analysis

Itai Yanai, Dalia Barkley, Florian Wagner, 2019, bioRxiv.

ENHANCE: Accurate denoising of single-cell RNA-Seq data

Florian Wagner, Itai Yanai, Dalia Barkley, 2019 .

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas

Itai Yanai, Florian Wagner, Dalia Barkley, 2020, Nature Biotechnology.

Widespread transcriptional scanning in testes modulates gene evolution rates

J. Boeke, I. Yanai, Maayan Baron, 2018, bioRxiv.

Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas

C. Hajdu, Maayan Baron, F. Wagner, 2020, Nature Biotechnology.

High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue

Carolyn A. Morrison, Andrew S. Kohlway, F. Wagner, 2022, bioRxiv.

High resolution mapping of the breast cancer tumor microenvironment using integrated single cell, spatial and in situ analysis of FFPE tissue Authors

Andrew S. Kohlway, F. Wagner, Michelli F. Oliveira, 2022 .

High-throughput mammalian two-hybrid screening for protein-protein interactions using transfected cell arrays

H. Lehrach, F. Wagner, M. Janitz, 2008, BMC Genomics.

Cell array-based intracellular localization screening reveals novel functional features of human chromosome 21 proteins

H. Lehrach, M. Yaspo, F. Wagner, 2006, BMC Genomics.

Developmental milestones punctuate gene expression in the Caenorhabditis embryo.

Itai Yanai, Michal Levin, Tamar Hashimshony, 2012, Developmental cell.

Building a tumor atlas: integrating single-cell RNA-Seq data with spatial transcriptomics in pancreatic ductal adenocarcinoma

I. Yanai, C. Hajdu, Maayan Baron, 2018, bioRxiv.

The XL-mHG test for enrichment: Algorithms, bounds, and power

Florian Wagner, F. Wagner, 2016, PeerJ Prepr..

Performance of different small sample RNA amplification techniques for hybridization on Affymetrix GeneChips.

Uwe Radelof, Florian Wagner, F. Wagner, 2007, Journal of biotechnology.

The Cytochrome P450 Engineering Database: a navigation and prediction tool for the cytochrome P450 protein family

Jürgen Pleiss, Markus Fischer, Michael Knoll, 2007, Bioinform..

The Cytochrome P450 Engineering Database: integration of biochemical properties

Jürgen Pleiss, Florian Wagner, Andrey Lisitsa, 2009, BMC Biochemistry.

Nonsense mutations in SMPX, encoding a protein responsive to physical force, result in X-chromosomal hearing loss.

F. Wagner, P. Frommolt, G. Nürnberg, 2011, American journal of human genetics.

The PHA Depolymerase Engineering Database: A systematic analysis tool for the diverse family of polyhydroxyalkanoate (PHA) depolymerases

Jürgen Pleiss, Michael Knoll, Thomas M. Hamm, 2008, BMC Bioinformatics.

Author Correction: Integrating microarray-based spatial transcriptomics and single-cell RNA-seq reveals tissue architecture in pancreatic ductal adenocarcinomas

I. Yanai, C. Hajdu, Maayan Baron, 2020, Nature Biotechnology.

Straightforward clustering of single-cell RNA-Seq data with t-SNE and DBSCAN

Florian Wagner, F. Wagner, 2019, bioRxiv.

Sequence analysis The Cytochrome P 450 Engineering Database : a navigation and prediction tool for the cytochrome P 450 protein family

Markus Fischer, Florian Wagner, Demet Sirim, 2007 .

GO-PCA: An Unsupervised Method to Explore Gene Expression Data Using Prior Knowledge

F. Wagner, FlorianWagner, 2015, PloS one.

ENHANCE: Accurate denoising of single-cell RNA-Seq data

I. Yanai, F. Wagner, Dalia Barkley, 2019 .