S. Gardner

James B Thissen, S. Gardner, R. Rowland, 2015, Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc.

Oligonucleotide and Long Polymeric DNA Encoding

R. Mariella, S. Gardner, A. Christian, 2003 .

FY 11 Report on Metagenome Analysis using Pathogen Marker Libraries Lawrence Livermore National Laboratory , Pathogen Informatics Group

Jonathan E. Allen, S. Gardner, K. McLoughlin, 2011 .

Screening of Viral Pathogens from Pediatric Ileal Tissue Samples after Vaccination

James B Thissen, S. Gardner, C. Jaing, 2014, Advances in virology.

TMTI Task 1.6 Genetic Engineering Methods and Detection

Jonathan E. Allen, T. Slezak, S. Gardner, 2009 .

On the origin of smallpox: Correlating variola phylogenics with historical smallpox records

Yu Li, Shea N Gardner, M. Walsh, 2007, Proceedings of the National Academy of Sciences.

Microbial Profiling of Combat Wound Infection through Detection Microarray and Next-Generation Sequencing

Jonathan E. Allen, Eric A. Elster, Jonathan A. Forsberg, 2014, Journal of Clinical Microbiology.

Viral Nucleic Acids in Live-Attenuated Vaccines: Detection of Minority Variants and an Adventitious Virus

Crystal Jaing, Kevin McLoughlin, E. Delwart, 2010, Journal of Virology.

A molecular portrait of maternal sepsis from Byzantine Troy

Jonathan E. Allen, Tatum D. Mortimer, E. Holmes, 2017, eLife.

Scheduling Chemotherapy: Catch 22 between Cell Kill and Resistance Evolution

S. Gardner, 2000 .

kSNP3.0: SNP detection and phylogenetic analysis of genomes without genome alignment or reference genome

Tom Slezak, Barry G. Hall, Shea N. Gardner, 2015, Bioinform..

When Whole-Genome Alignments Just Won't Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

Barry G. Hall, Shea N. Gardner, S. Gardner, 2013, PloS one.

Current strategic thinking for the development of a trivalent alphavirus vaccine for human use.

S. Gardner, D. Wolfe, C. Schmaljohn, 2014, The American journal of tropical medicine and hygiene.

Modeling multi-drug chemotherapy: tailoring treatment to individuals.

Shea N Gardner, S. Gardner, 2002, Journal of theoretical biology.

Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes

T. Slezak, S. Gardner, 2014, BMC Bioinformatics.

Cell Cycle Phase-Specific CHemotherapy: Computation Methods for Guiding Treatment

Shea N Gardner, S. Gardner, 2002, Cell cycle.

A microbial detection array (MDA) for viral and bacterial detection

Shea N Gardner, T. Slezak, S. Gardner, 2010, BMC Genomics.

Annals of Clinical Microbiology and Antimicrobials Open Access Predicting the Sensitivity and Specificity of Published Real-time Pcr Assays

S. Gardner, G. Lemmon, Gordon H Lemmon, 2008 .

Characterization of Genetic Variability of Venezuelan Equine Encephalitis Viruses

Jonathan E. Allen, Nicholas A. Be, S. Gardner, 2016, PloS one.

Scalable metagenomic taxonomy classification using a reference genome database

Maya Gokhale, Jonathan E. Allen, Sasha Ames, 2013, Bioinform..

A Functional Gene Array for Detection of Bacterial Virulence Elements

P. Williams, T. Slezak, C. Manohar, 2007, PloS one.

Skip the Alignment: Degenerate, Multiplex Primer and Probe Design Using K-mer Matching Instead of Alignments

Peter L. Williams, Shea N. Gardner, David A. Hysom, 2012, PloS one.

Multiplex primer prediction software for divergent targets

Peter L. Williams, Christine A. Hara, Bill W. Colston, 2009, Nucleic acids research.

Sequencing Needs for Viral Diagnostics

Shea N. Gardner, T. Slezak, S. Gardner, 2004, Journal of Clinical Microbiology.

Limitations of TaqMan PCR for Detecting Divergent Viral Pathogens Illustrated by Hepatitis A, B, C, and E Viruses and Human Immunodeficiency Virus

Thomas A. Kuczmarski, Elizabeth A. Vitalis, Shea N. Gardner, 2003, Journal of Clinical Microbiology.

Comparative Genomics Tools Applied to Bioterrorism Defence

Adam Zemla, Tom Slezak, Carol L. Ecale Zhou, 2003, Briefings Bioinform..

Rapid development of nucleic acid diagnostics

J. Patrick Fitch, Stefan Kurtz, Thomas A. Kuczmarski, 2002, Proc. IEEE.

saSNP Approach for Scalable SNP Analyses of Multiple Bacterial or Viral Genomes

Tom Slezak, Shea N. Gardner, T. Slezak, 2010 .

Multiplex Degenerate Primer Design for Targeted Whole Genome Amplification of Many Viral Genomes

David A. Hysom, Shea N. Gardner, Crystal J. Jaing, 2014, Adv. Bioinformatics.

Immunodeficiency Virus Hepatitis A , B , C , and E Viruses and Human Divergent Viral Pathogens Illustrated by Limitations of TaqMan PCR for Detecting

T. Slezak, S. Gardner, E. Vitalis, 2003 .

Correction: When Whole-Genome Alignments Just Won’t Work: kSNP v2 Software for Alignment-Free SNP Discovery and Phylogenetics of Hundreds of Microbial Genomes

S. Gardner, B. Hall, 2015, PloS one.

The Cellular Lethality of Radiation-Induced Chromosome Translocations in Human Lymphocytes

S. Gardner, J. Tucker, 2002, Radiation research.

Induced plant defence and the evolution of counter-defences in herbivores

A. Agrawal, S. Gardner, 2002 .

Differential expression of viral agents in lymphoma tissues of patients with ABC diffuse large B-cell lymphoma from high and low endemic infectious disease regions.

James B Thissen, S. Gardner, J. Lundahl, 2016, Oncology letters.

New tools for cancer chemotherapy: computational assistance for tailoring treatments.

Shea N Gardner, Michael Fernandes, S. Gardner, 2003, Molecular cancer therapeutics.

Bioinformatics for microbial genotyping of equine encephalitis viruses, orthopoxviruses, and hantaviruses.

S. Gardner, C. Jaing, 2011, Journal of virological methods.

A revolving dose strategy to delay the evolution of both quantitative vs major monogene resistances to pesticides and drugs

Marc Mangel, Shea N. Gardner, Jonathan Gressel, 1998 .

MODELING INVESTMENTS IN SEEDS, CLONAL OFFSPRING, AND TRANSLOCATION IN A CLONAL PLANT

Marc Mangel, Shea N. Gardner, M. Mangel, 1999 .

Costs and benefits of fighting infection in locusts

S. Gardner, M. Thomas, 2001 .

Prediction of cancer outcome with microarrays

S. Gardner, M. Fernandes, Michael Fernandes, 2005, The Lancet.

Consumer pressure, seed versus safe-site limitation, and plant population dynamics

S. Gardner, J. Maron, 2000, Oecologia.

Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes

Tom Slezak, Shea N. Gardner, T. Slezak, 2014, BMC Bioinformatics.

Scalable SNP Analyses of 100+ Bacterial or Viral Genomes

Tom Slezak, Shea N. Gardner, T. Slezak, 2010 .

Identification of Genome-Wide Mutations in Ciprofloxacin-Resistant F. tularensis LVS Using Whole Genome Tiling Arrays and Next Generation Sequencing

James B Thissen, A. Zemla, V. Fofanov, 2016, PloS one.

Comprehensive and Sensitive Microbial Detection Using A Broad Spectrum Detection Microarray

Jonathan E. Allen, Tom Slezak, Shea N. Gardner, 2015 .

LAVA: An Open-Source Approach To Designing LAMP (Loop-Mediated Isothermal Amplification) DNA Signatures

Brian R. Baker, John M. Dzenitis, Elizabeth A. Vitalis, 2011, BMC Bioinformatics.

Identification of SNPs associated with variola virus virulence

Jason H. Moore, Shea N. Gardner, Anne Gatewood Hoen, 2013, BioData Mining.

Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays

Shea N Gardner, S. Gardner, Mark C Wagner, 2005, BMC Genomics.

Detection of Adventitious Viruses from Biologicals Using a Broad-Spectrum Microbial Detection Array

James B Thissen, T. Slezak, S. Gardner, 2011, PDA Journal of Pharmaceutical Science and Technology.

Mark‐Resight Population Estimation with Imperfect Observations

M. Mangel, S. Gardner, 1996 .

Bioinformatics for microbial genotyping of equine encephalitis viruses, orthopoxviruses, and hantaviruses.

S. Gardner, C. Jaing, 2011, Journal of virological methods.