M. Kapushesky

发表

A global map of human gene expression

H. Parkinson, A. Brazma, E. Ukkonen, 2010, Nature Biotechnology.

Unraveling nature's networks

Misha Kapushesky, Lev Soinov, L. Soinov, 2003, Genome Biology.

Gene Expression Atlas update—a value-added database of microarray and sequencing-based functional genomics experiments

Aedín C. Culhane, Robert Petryszak, James Malone, 2011, Nucleic Acids Res..

Mitochondrial Complex I Is a Global Regulator of Secondary Metabolism, Virulence and Azole Sensitivity in Fungi

M. Gut, I. Gut, M. Kapushesky, 2016, PloS one.

ChroCoLoc: an application for calculating the probability of co-localization of microarray gene expression

Alvis Brazma, Misha Kapushesky, Christian Schwager, 2006, Bioinform..

Gene Expression Atlas at the European Bioinformatics Institute

Ibrahim Emam, James Malone, Helen E. Parkinson, 2009, Nucleic Acids Res..

OntoCAT -- simple ontology search and integration in Java, R and REST/JavaScript

Morris A. Swertz, Helen E. Parkinson, Tony Burdett, 2011, BMC Bioinformatics.

Deciphering the mechanism of action of 089, a compound impairing the fungal cell cycle

S. Heath, M. Gut, I. Gut, 2018, Scientific Reports.

Systems biology of infectious diseases: a focus on fungal infections.

Duccio Cavalieri, Brian Miller, Paul Bowyer, 2011, Immunobiology.

GeneSigDB: a manually curated database and resource for analysis of gene expression signatures

Aedín C. Culhane, Benjamin Haibe-Kains, John Quackenbush, 2011, Nucleic Acids Res..

ArrayExpress—a public repository for microarray gene expression data at the EBI

Sergio Contrino, Helen E. Parkinson, Susanna-Assunta Sansone, 2004, Nucleic Acids Res..

Genomic and Phenotypic Variation in Morphogenetic Networks of Two Candida albicans Isolates Subtends Their Different Pathogenic Potential

M. Gut, I. Gut, D. Cavalieri, 2018, Front. Immunol..

ArrayExpress - a public repository for microarray gene expression data at the EBI

Helen E. Parkinson, Susanna-Assunta Sansone, Philippe Rocca-Serra, 2003, Nucleic Acids Res..

ArrayExpress—a public database of microarray experiments and gene expression profiles

Helen E. Parkinson, Alvis Brazma, Ugis Sarkans, 2006, Nucleic Acids Res..

ArrayExpress update—from an archive of functional genomics experiments to the atlas of gene expression

Ibrahim Emam, Marco Brandizi, Faisal Ibne Rezwan, 2008, Nucleic Acids Res..

Modeling sample variables with an Experimental Factor Ontology

Anna Zhukova, James Malone, Helen E. Parkinson, 2010, Bioinform..

Low level genome mistranslations deregulate the transcriptome and translatome and generate proteotoxic stress in yeast

Manuel A. S. Santos, Gabriela R. Moura, M. Kapushesky, 2012, BMC Biology.

Importing ArrayExpress datasets into R/Bioconductor

Audrey Kauffmann, Helen E. Parkinson, Wolfgang Huber, 2009, Bioinform..

ontoCAT: an R package for ontology traversal and search

Morris A. Swertz, Natalja Kurbatova, Tomasz Adamusiak, 2011, Bioinform..

4DXpress: a database for cross-species expression pattern comparisons

Thorsten Henrich, Joachim Wittbrodt, Peer Bork, 2007, Nucleic Acids Res..

Expression Profiler: next generation - an online platform for analysis of microarray data

Aedín C. Culhane, Meelis Kull, Aurora Torrente, 2004, Nucleic Acids Res..

A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings

Aurora Torrente, Alvis Brazma, Misha Kapushesky, 2005, Bioinform..

A pipeline for RNA-seq data processing and quality assessment

Alvis Brazma, Andrew Tikhonov, Misha Kapushesky, 2011, Bioinform..

The ArrayExpress gene expression database: a software engineering and implementation perspective

Sergio Contrino, Helen E. Parkinson, Susanna-Assunta Sansone, 2005, Bioinform..

Data storage and analysis in ArrayExpress.

Helen Parkinson, Alvis Brazma, Ugis Sarkans, 2006, Methods in enzymology.

Correction: Mitochondrial Complex I Is a Global Regulator of Secondary Metabolism, Virulence and Azole Sensitivity in Fungi

M. Gut, I. Gut, M. Kapushesky, 2017, PLoS ONE.

ArrayExpress: a public database of gene expression data at EBI.

Sergio Contrino, Helen Parkinson, Susanna-Assunta Sansone, 2003, Comptes rendus biologies.

Reversion of a fungal genetic code alteration links proteome instability with genomic and phenotypic diversification

Manuel A. S. Santos, Gabriela R. Moura, M. Gut, 2013, Proceedings of the National Academy of Sciences.

Data Storage and Analysis in ArrayExpress and Expression Profiler

Helen Parkinson, Alvis Brazma, Ugis Sarkans, 2008, Current protocols in bioinformatics.

Deciphering the mechanism of action of 089, a compound impairing the fungal cell cycle

S. Heath, M. Gut, I. Gut, 2018, Scientific Reports.

A pipeline for RNA-seq data processing and quality assessment

A. Brazma, M. Kapushesky, Andrew Tikhonov, 2011, Bioinform..

Databases and ontologies Advance Access publication March 3, 2010 Modeling sample variables with an Experimental Factor Ontology

A. Brazma, M. Kapushesky, T. Adamusiak, 2009 .

A new algorithm for comparing and visualizing relationships between hierarchical and flat gene expression data clusterings

A. Brazma, M. Kapushesky, Aurora Torrente, 2005, Bioinform..