Ângela Gonçalves

发表

A global map of human gene expression

H. Parkinson, A. Brazma, E. Ukkonen, 2010, Nature Biotechnology.

Rapid Turnover of Long Noncoding RNAs and the Evolution of Gene Expression

Chris P. Ponting, Michael D. Wilson, Klara Stefflova, 2012, PLoS genetics.

Multi-species, multi-transcription factor binding highlights conserved control of tissue-specific biological pathways

Michael D. Wilson, Andre J. Faure, W. McLaren, 2014, eLife.

Molecular and functional variation in iPSC-derived sensory neurons

Daniel J. Gaffney, Alex Gutteridge, H. Kilpinen, 2017, bioRxiv.

Pol Iii Binding in Six Mammalian Genomes Shows High Conservation among Amino Acid Isotypes, despite Divergence in Trna Gene Usage Ukpmc Funders Group Author Manuscript Introduction

Alvis Brazma, Michael D. Wilson, Stephen Watt, 2022 .

Common genetic variation drives molecular heterogeneity in human iPSCs

Davis J. McCarthy, Daniel J. Gaffney, Shane A. McCarthy, 2017, Nature.

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads

L. Coin, S. Richardson, A. Lewin, 2011, Genome Biology.

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages

Michael D. Wilson, Petra C. Schwalie, D. Odom, 2012, Cell.

Single-cell reconstruction of the early maternal–fetal interface in humans

Kerstin B. Meyer, Sarah A. Teichmann, Jong-Eun Park, 2018, Nature.

Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

John C. Marioni, Ewan Birney, Daniel D. Seaton, 2020, Nature Communications.

Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes

Peter W. Harrison, Davis J. McCarthy, Daniel J. Gaffney, 2020, Nature Methods.

Molecular and functional variation in iPSC-derived sensory 1 neurons 2

Benn, Daniel J. Gaffney, H. Kilpinen, 2017 .

Reconstructing the human first trimester fetal–maternal interface using single cell transcriptomics

Michael J. T. Stubbington, S. Teichmann, K. Meyer, 2018, bioRxiv.

Fgf and Esrrb integrate epigenetic and transcriptional networks that regulate self-renewal of trophoblast stem cells

D. Oxley, Ângela Gonçalves, M. Hemberger, 2015, Nature Communications.

organization and CTCF binding in multiple mammalian lineages.

Michael D. Wilson, Petra C. Schwalie, D. Odom, 2022 .

Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

Davis J. McCarthy, Daniel J. Gaffney, Shane A. McCarthy, 2020, Nature Communications.

Corrigendum: Common genetic variation drives molecular heterogeneity in human iPSCs.

Davis J. McCarthy, Shane A. McCarthy, R. Durbin, 2017, Nature.

The function and decline of the female reproductive tract at single-cell resolution

S. Haas, Ângela Gonçalves, Fritjof Lammers, 2022, bioRxiv.

Fast identification of differential distributions in single-cell RNA-sequencing data with waddR

Roman Schefzik, Julian Flesch, Ângela Gonçalves, 2021, Bioinform..

Single-cell reconstruction of the early maternal–fetal interface in humans

Michael J. T. Stubbington, S. Teichmann, D. Rowitch, 2018, Nature.

Cardelino: computational integration of somatic clonal substructure and single-cell transcriptomes

Davis J. McCarthy, Daniel J. Gaffney, Shane A. McCarthy, 2020, Nature Methods.

Regulatory Divergence of Transcript Isoforms in a Mammalian Model System

D. Odom, J. Marioni, A. Brazma, 2015, PloS one.

Common genetic variation drives molecular heterogeneity in human iPSCs

Davis J. McCarthy, Daniel J. Gaffney, Shane A. McCarthy, 2016, Nature.

Extensive compensatory cis-trans regulation in the evolution of mouse gene expression

Paul Flicek, Alvis Brazma, Klara Stefflova, 2012, Genome research.

Waves of Retrotransposon Expansion Remodel Genome Organization and CTCF Binding in Multiple Mammalian Lineages

Michael D. Wilson, Petra C. Schwalie, D. Odom, 2012, Cell.

A pipeline for RNA-seq data processing and quality assessment

Alvis Brazma, Andrew Tikhonov, Misha Kapushesky, 2011, Bioinform..

Publisher Correction: Single-cell RNA-sequencing of differentiating iPS cells reveals dynamic genetic effects on gene expression

Davis J. McCarthy, Shane A. McCarthy, R. Durbin, 2020, Nature Communications.

A Model for a Heterogeneous Genetic Network

Ernesto Costa, Ângela T.F. Gonçalves, E. Costa, 2010 .

A Computational Model of Gene Regulatory Networks and its Topological Properties

Ernesto Costa, Ângela Gonçalves, E. Costa, 2008, ALIFE.

Signatures of TSPAN8 variants associated with human metabolic regulation and diseases

Michael R. Johnson, Daniel J. Gaffney, L. Coin, 2020, bioRxiv.

Pol III binding in six mammalian genomes shows high conservation among amino acid isotypes, despite divergence in tRNA gene usage

D. Odom, A. Brazma, C. Kutter, 2011, Nature Genetics.