J. Kosiński

发表

Molecular architecture of the inner ring scaffold of the human nuclear pore complex

J. Briggs, M. Beck, E. Hurt, 2016, Science.

In situ structural analysis of the human nuclear pore complex

P. Bork, M. Beck, K. Bui, 2015, Nature.

Crystal structure of Bacillus subtilis TrmB, the tRNA (m7G46) methyltransferase

Janusz M. Bujnicki, Stéphane Aymerich, Ingrid Zegers, 2006, Nucleic acids research.

Analysis of the quaternary structure of the MutL C-terminal domain.

Janusz M Bujnicki, Peter Friedhoff, Jan Kosinski, 2005, Journal of molecular biology.

Identification of Lynch syndrome mutations in the MLH1–PMS2 interface that disturb dimerization and mismatch repair

J. Bujnicki, J. Kosiński, P. Friedhoff, 2010, Human mutation.

LuluDB—The Database Created Based on Small RNA, Transcriptome, and Degradome Sequencing Shows the Wide Landscape of Non-coding and Coding RNA in Yellow Lupine (Lupinus luteus L.) Flowers and Pods

J. Kosiński, P. Glazińska, Milena Kulasek, 2020, Frontiers in Genetics.

Integrated Analysis of Small RNA, Transcriptome and Degradome Sequencing Provides New Insights into Floral Development and Abscission in Yellow Lupine (Lupinus luteus L.)

J. Kosiński, P. Glazińska, Milena Kulasek, 2019, International journal of molecular sciences.

Architecture of the yeast Elongator complex

B. Séraphin, C. Müller, M. Beck, 2016, EMBO reports.

Integrative structural biology in the era of accurate structure prediction.

N. Ben-Tal, M. Kosloff, A. Lupas, 2021, Journal of molecular biology.

In situ architecture of the algal nuclear pore complex

W. Baumeister, M. Beck, P. A. Salomé, 2018, Nature Communications.

Systematic analysis of protein turnover in primary cells

Martin Beck, Nils Kurzawa, Holger Franken, 2018, Nature Communications.

Phylogenetic analysis of haloalkane dehalogenases

J. Bujnicki, J. Damborský, J. Kosiński, 2007, Proteins.

The PMS2 subunit of human MutLalpha contains a metal ion binding domain of the iron-dependent repressor protein family.

J. Bujnicki, J. Kosiński, P. Friedhoff, 2008, Journal of molecular biology.

A model of restriction endonuclease MvaI in complex with DNA: A template for interpretation of experimental data and a guide for specificity engineering

Janusz M Bujnicki, Jan Kosinski, J. Bujnicki, 2007, Proteins.

Novel protein fold discovered in the PabI family of restriction enzymes

J. Bujnicki, J. Kosiński, K. Nagata, 2007, Nucleic acids research.

Identifying an interaction site between MutH and the C-terminal domain of MutL by crosslinking, affinity purification, chemical coding and mass spectrometry

D. Kirsch, B. Spengler, J. Kosiński, 2006, Nucleic acids research.

Structure of the TFIIIC subcomplex τA provides insights into RNA polymerase III pre-initiation complex formation

C. Müller, F. Baudin, J. Kosiński, 2020, Nature Communications.

In situ architecture of the algal nuclear pore complex

W. Baumeister, M. Beck, J. Plitzko, 2017, bioRxiv.

Molecular structures of unbound and transcribing RNA polymerase III

C. Müller, C. Sachse, W. Hagen, 2015, Nature.

Structural insights into transcription initiation by yeast RNA polymerase I

C. Müller, M. Beck, C. Sachse, 2017, The EMBO journal.

Physiological truncation and domain organization of a novel uracil‐DNA‐degrading factor

J. Bujnicki, G. Rivas, K. Medzihradszky, 2010, The FEBS journal.

Integrated analysis of small RNA, transcriptome and degradome sequencing provides new insights into floral development and abscission in yellow lupine (Lupines luteus L.)

J. Kosiński, P. Glazińska, Milena Kulasek, 2019 .

Structural role of essential light chains in the apicomplexan glideosome

T. Gilberger, D. Svergun, J. Kosiński, 2019, Communications Biology.

AI-based structure prediction empowers integrative structural analysis of human nuclear pores

G. Hummer, M. Beck, Marie-Therese Mackmull, 2022, Science.

Structure of the mycobacterial ESX-5 Type VII Secretion System hexameric pore complex

M. Savitski, J. Kosiński, M. Wilmanns, 2020, bioRxiv.

In-cell architecture of the nuclear pore and snapshots of its turnover

Herman K. H. Fung, J. Mahamid, C. Müller, 2020, Nature.

In cell architecture of the nuclear pore complex and snapshots of its turnover

Herman K. H. Fung, J. Mahamid, C. Müller, 2020, bioRxiv.

AGouTI–Flexible Annotation of Genomic and Transcriptomic Intervals

J. Kosiński, M. Żywicki, 2022, bioRxiv.

Structure and Evolutionary Origin of Ca2+-Dependent Herring Type II Antifreeze Protein

J. Bujnicki, J. Kosiński, J. Seetharaman, 2007, PloS one.

Automated structure modeling of large protein assemblies using crosslinks as distance restraints

M. Nilges, C. Müller, M. Beck, 2016, Nature Methods.

Structure of Prototypic Peptide Transporter DtpA from E. coli in Complex with Valganciclovir Provides Insights into Drug Binding of Human PepT1.

E. Pardon, J. Steyaert, J. Kosiński, 2019, Journal of the American Chemical Society.

Molecular basis of tRNA recognition by the Elongator complex

C. Müller, J. Kosiński, M. I. Dauden, 2019, Science Advances.

The PD-(D/E)XK superfamily revisited: identification of new members among proteins involved in DNA metabolism and functional predictions for domains of (hitherto) unknown function

Marcin Feder, Jan Kosinski, Janusz M. Bujnicki, 2005, BMC Bioinformatics.

REPAIRtoire—a database of DNA repair pathways

Kristian Rother, Jan Kosinski, Janusz M. Bujnicki, 2010, Nucleic Acids Res..

FRankenstein becomes a cyborg: The automatic recombination and realignment of fold recognition models in CASP6

Marcin Feder, Michal J Gajda, Jan Kosinski, 2005, Proteins.

A “FRankenstein's monster” approach to comparative modeling: Merging the finest fragments of Fold‐Recognition models and iterative model refinement aided by 3D structure evaluation

Marcin Feder, Jan Kosinski, Michal A Kurowski, 2003, Proteins.

Nuclear pores dilate and constrict in cellulo

G. Hummer, J. Mahamid, M. Beck, 2021, Science.

Artificial intelligence reveals nuclear pore complexity

G. Hummer, M. Beck, Marie-Therese Mackmull, 2021, bioRxiv.

Xlink Analyzer: Software for analysis and visualization of cross-linking data in the context of three-dimensional structures

Martin Beck, Jan Kosinski, Alexander von Appen, 2015, Journal of structural biology.

RetrogeneDB–a database of plant and animal retrocopies

Jan Kosinski, Izabela Makalowska, Wojciech Rosikiewicz, 2017, Database J. Biol. Databases Curation.

Higher‐order assemblies of oligomeric cargo receptor complexes form the membrane scaffold of the Cvt vesicle

J. Briggs, C. Sachse, A. Picco, 2016, EMBO reports.

An RNA to rule them all: Critical steps in Lassa virus ribonucleoparticle assembly and recruitment

L. Sänger, J. Kosiński, C. Uetrecht, 2023, bioRxiv.

AlphaPulldown—a python package for protein–protein interaction screens using AlphaFold-Multimer

J. Kosiński, M. Rosenthal, Grzegorz Chojnowski, 2022, bioRxiv.

The Role of RNA Secondary Structure in Regulation of Gene Expression in Bacteria

J. Kosiński, M. Żywicki, K. Bąkowska-Żywicka, 2021, International journal of molecular sciences.

Influenza Polymerase Can Adopt an Alternative Configuration Involving a Radical Repacking of PB2 Domains

Adam Round, Martin Beck, Eric Thierry, 2016, Molecular cell.

From the resolution revolution to evolution: structural insights into the evolutionary relationships between vesicle coats and the nuclear pore.

M. Beck, J. Kosiński, S. Mosalaganti, 2018, Current opinion in structural biology.

A short linear motif in scaffold Nup145C connects Y-complex with pre-assembled outer ring Nup82 complex

M. Beck, E. Hurt, J. Kosiński, 2017, Nature Communications.

Variable microtubule architecture in the malaria parasite

F. Frischknecht, T. Gilberger, D. Vasishtan, 2023, Nature Communications.

Form follows function: Variable microtubule architecture in the malaria parasite

F. Frischknecht, T. Gilberger, D. Vasishtan, 2022, bioRxiv.

Integrative structural modeling of macromolecular complexes using Assembline

J. Kosiński, Kai Karius, Vasileios Rantos, 2021, Nature Protocols.

Automated structure modeling of large protein assemblies using crosslinks as distance restraints

M. Nilges, C. Müller, M. Beck, 2016, Nature Methods.

Theoretical model of restriction endonuclease HpaI in complex with DNA, predicted by fold recognition and validated by site‐directed mutagenesis

Jan Kosinski, J. Bujnicki, J. Kosiński, 2006, Proteins.

Mva1269I: A Monomeric Type IIS Restriction Endonuclease from Micrococcus Varians with Two EcoRI- and FokI-like Catalytic Domains*

Janusz M Bujnicki, J. Bujnicki, J. Kosiński, 2005, Journal of Biological Chemistry.

The distance between the plasma membrane and the actomyosin cortex acts as a nanogate to control cell surface mechanics

J. Mahamid, J. Kosiński, O. du Roure, 2023, bioRxiv.

Probabilistic cross‐link analysis and experiment planning for high‐throughput elucidation of protein structure

Chris Bailey-Kellogg, Xiaoduan Ye, Patrick K O'Neil, 2004, Protein science : a publication of the Protein Society.

Integrative structural modeling of macromolecular complexes using Assembline

J. Kosiński, Kai Karius, Vasileios Rantos, 2021, Nature Protocols.

Systematic analysis of protein turnover in primary cells

M. Bantscheff, M. Savitski, Toby Mathieson, 2018, Nature Communications.

Integrative structural analysis of the type III secretion system needle complex from Shigella flexneri

J. Rappsilber, J. Kosiński, M. Kolbe, 2023, Protein science : a publication of the Protein Society.

In situ architecture of the algal nuclear pore complex

W. Baumeister, M. Beck, J. Plitzko, 2017, bioRxiv.

Nuclear pores constrict upon energy depletion

J. Mahamid, M. Beck, J. Kosiński, 2020, bioRxiv.

A short linear motif in scaffold Nup145C connects Y-complex with pre-assembled outer ring Nup82 complex

M. Beck, E. Hurt, J. Kosiński, 2017, Nature Communications.

An RNA to rule them all: Critical steps in Lassa virus ribonucleoparticle assembly and recruitment

L. Sänger, J. Kosiński, C. Uetrecht, 2023, bioRxiv.

Structure of the mycobacterial ESX-5 type VII secretion system pore complex

M. Savitski, J. Kosiński, M. Wilmanns, 2021, Science Advances.

MODexplorer: an integrated tool for exploring protein sequence, structure and function relationships

Anna Tramontano, Jan Kosinski, Alessandro Barbato, 2013, Bioinform..

Specialization versus conservation: How Pol I and Pol III use the conserved architecture of the pre-initiation complex for specialized transcription

C. Müller, J. Kosiński, N. Hoffmann, 2016, Transcription.

Identifying repurposed drugs with moderate anti-influenza virus activity through computational prioritization of drug-target pairs

S. Maurer-Stroh, J. Kosiński, R. Sugrue, 2023, bioRxiv.

A conserved motif in the disordered linker of human MLH1 is vital for DNA mismatch repair and its function is diminished by a cancer family mutation

T. Gibson, V. Dötsch, J. Kosiński, 2023, Nucleic acids research.

New opportunities in integrative structural modeling.

J. Kosiński, Daniel S. Ziemianowicz, 2022, Current opinion in structural biology.

Elongator catalytic subcomplex Elp123 lobe

C. Müller, J. Kosiński, F. Weis, 2019 .

CELL BIOLOGY Nuclear pores dilate and constrict in cellulo

J. Mahamid, J. Kosiński, A. Halavatyi, 2022 .

Molecular architecture of the inner ring scaffold of the human nuclear pore complex

J. Briggs, E. Hurt, K. Bui, 2016, Science.