Peter Cimermancic

发表

Molecular Architecture of the 40S⋅eIF1⋅eIF3 Translation Initiation Complex

R. Aebersold, A. Sali, J. P. Erzberger, 2014, Cell.

Molecular Architecture and Function of the SEA Complex, a Modulator of the TORC1 Pathway*

Seung Joong Kim, B. Chait, A. Sali, 2014, Molecular & Cellular Proteomics.

Architecture of the Human and Yeast General Transcription and DNA Repair Factor TFIIH.

Charles H. Greenberg, A. Sali, J. Ranish, 2015, Molecular cell.

CryptoSite: Expanding the Druggable Proteome by Characterization and Prediction of Cryptic Binding Sites.

Julie C. Mitchell, Andrej Sali, Dina Schneidman-Duhovny, 2016, Journal of molecular biology.

High-resolution network biology: connecting sequence with function

Zachary A. Szpiech, Andrej Sali, Nevan J. Krogan, 2013, Nature Reviews Genetics.

Discovery and characterization of gut microbiota decarboxylases that can produce the neurotransmitter tryptamine.

Andrew H. Van Benschoten, M. Fischbach, Peter Cimermancic, 2014, Cell host & microbe.

Insights into Secondary Metabolism from a Global Analysis of Prokaryotic Biosynthetic Gene Clusters

Roger G. Linington, Kenji L. Kurita, B. Birren, 2014, Cell.

SNX27 mediates retromer tubule entry and endosome-to-plasma membrane trafficking of signaling receptors

Benjamin E. L. Lauffer, N. Krogan, M. von Zastrow, 2011, Nature Cell Biology.

Host Cell Interactome of HIV-1 Rev Includes RNA Helicases Involved in Multiple Facets of Virus Production*

J. Yates, N. Krogan, Jeffrey R. Johnson, 2011, Molecular & Cellular Proteomics.

IMG-ABC: A Knowledge Base To Fuel Discovery of Biosynthetic Gene Clusters and Novel Secondary Metabolites

Victor M. Markowitz, Ken Chu, Krishna Palaniappan, 2015, mBio.

Molecular Architecture of the 40SeIF1eIF3 Translation Initiation Complex.

Ruedi Aebersold, Andrej Sali, Peter Cimermancic, 2014 .

High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis

Jürgen Cox, Peter Cimermancic, Marc Berndl, 2019, Nature Methods.

Purification and characterization of HIV–human protein complexes

Tom Alber, Qiang Zhou, Peter Cimermancic, 2010, Methods.

The Cyclin K/Cdk12 complex maintains genomic stability via regulation of expression of DNA damage response genes.

Jernej Ule, Peter Cimermancic, Jiri Kohoutek, 2011, Genes & development.

Genetic interaction mapping informs integrative structure determination of protein complexes

John H. Morris, J. Bader, N. Krogan, 2020, Science.

Molecular Details Underlying Dynamic Structures and Regulation of the Human 26S Proteasome*

Charles H. Greenberg, R. Aebersold, A. Sali, 2017, Molecular & Cellular Proteomics.

Immunoproteasome functions explained by divergence in cleavage specificity and regulation

A. Sali, C. Craik, Peter Cimermancic, 2017, eLife.

Integration of machine learning and pan-genomics expands the biosynthetic landscape of RiPP natural products

Alexander M. Kloosterman, M. Fischbach, G. V. van Wezel, 2020, bioRxiv.

IMG-ABC: An Atlas of Biosynthetic Gene Clusters to Fuel the Discovery of Novel Secondary Metabolites

Natalia N. Ivanova, M. Fischbach, N. Kyrpides, 2014 .

A mass spectrometry-guided genome mining approach for natural product peptidogenomics

Pieter C. Dorrestein, William Fenical, Peter Cimermancic, 2011, Nature chemical biology.

A Systematic Analysis of Biosynthetic Gene Clusters in the Human Microbiome Reveals a Common Family of Antibiotics

Peter Cimermancic, Makedonka Mitreva, Michael A. Fischbach, 2014, Cell.

Molecular Architecture of the 40S⋅eIF1⋅eIF3 Translation Initiation Complex

R. Aebersold, A. Sali, D. Boehringer, 2014, Cell.

antiSMASH: rapid identification, annotation and analysis of secondary metabolite biosynthesis gene clusters in bacterial and fungal genome sequences

Kai Blin, Tilmann Weber, Rainer Breitling, 2011, Nucleic Acids Res..

A Systematic Computational Analysis of Biosynthetic Gene Cluster Evolution: Lessons for Engineering Biosynthesis

Andrej Sali, Eriko Takano, Peter Cimermancic, 2014, PLoS Comput. Biol..

Comparative analysis of machine learning approaches to classify tumor mutation burden in lung adenocarcinoma using histopathology images

Po-Hsuan Cameron Chen, David F. Steiner, C. Mermel, 2021, Scientific Reports.

Global landscape of HIV–human protein complexes

John H. Morris, Tom Alber, Eyal Akiva, 2011, Nature.

The proteasome-interacting Ecm29 protein disassembles the 26S proteasome in response to oxidative stress

Ilan E. Chemmama, A. Sali, Lan Huang, 2017, The Journal of Biological Chemistry.

Scoring Large‐Scale Affinity Purification Mass Spectrometry Datasets with MiST

Andrej Sali, Erik Verschueren, John Von Dollen, 2015, Current protocols in bioinformatics.

Affinity purification–mass spectrometry and network analysis to understand protein-protein interactions

Alexander R. Pico, Jeffrey R. Johnson, Peter Cimermancic, 2014, Nature Protocols.

Vif hijacks CBF-β to degrade APOBEC3G and promote HIV-1 infection

Andrej Sali, Nevan J. Krogan, Peter Cimermancic, 2011, Nature.

High-quality MS/MS spectrum prediction for data-dependent and data-independent acquisition data analysis

J. Cox, Roie Levy, Peter Cimermancic, 2019, Nature Methods.

Regulation of the human 26 S proteasome by Ecm 29 1 The Proteasome-Interacting Ecm 29 Protein Disassembles the 26 S Proteasome in Response to Oxidative Stress

Ilan E. Chemmama, A. Sali, Lan Huang, 2017 .

Covalent Docking of Large Libraries for the Discovery of Chemical Probes

Nir London, Brian K. Shoichet, Kenji Uchida, 2014, Nature chemical biology.

Expansion of RiPP biosynthetic space through integration of pan-genomics and machine learning uncovers a novel class of lantibiotics.

Alexander M. Kloosterman, M. Fischbach, G. V. van Wezel, 2020, PLoS biology.

Assessing Exhaustiveness of Stochastic Sampling for Integrative Modeling of Macromolecular Structures.

Andrej Sali, Peter Cimermancic, Shruthi Viswanath, 2017, Biophysical journal.

An end-to-end platform for digital pathology using hyperspectral autofluorescence microscopy and deep learning based virtual histology

Po-Hsuan Cameron Chen, Peter Cimermancic, A. Burt, 2023, medRxiv.

A Mass Spectrometry-guided Genome Mining Approach for Natural Product Peptidogenomics

P. Dorrestein, Peter Cimermancic, R. Kersten, 2022 .

Molecular Architecture of the 40S⋅eIF1⋅eIF3 Translation Initiation Complex

R. Aebersold, A. Sali, D. Boehringer, 2014, Cell.