K. Ye

发表

Identification of cross-linked peptides from complex samples

M. Dong, Bing Yang, Yan-Jie Wu, 2012, Nature Methods.

Structural basis for overhang-specific small interfering RNA recognition by the PAZ domain

D. Patel, K. Ye, Jinbiao Ma, 2004, Nature.

Dimerization, but not phosphothreonine binding, is conserved between the forkhead‐associated domains of Drosophila MU2 and human MDC1

K. Ye, Shukun Luo, 2012, FEBS letters.

Structure of the Autocatalytic Cysteine Protease Domain of Potyvirus Helper-component Proteinase*

Jinzhong Lin, K. Ye, Keqiong 克穷 Ye 叶, 2011, The Journal of Biological Chemistry.

Cryo-EM structure of 90S small ribosomal subunit precursors in transition states

K. Ye, Yifei Du, W. An, 2020, Science.

Structural and functional analysis of Utp23, a yeast ribosome synthesis factor with degenerate PIN domain

K. Ye, Mengyi Sun, Jing Lu, 2013, RNA.

An RNA-Binding Complex Involved in Ribosome Biogenesis Contains a Protein with Homology to tRNA CCA-Adding Enzyme

Jinzhong Lin, K. Ye, Yingang Feng, 2013, PLoS biology.

Reconstitution and structural analysis of the yeast box H/ACA RNA-guided pseudouridine synthase.

Shuang Li, K. Ye, Bing Yang, 2011, Genes & development.

Kinetic and thermodynamic characterization of the reaction pathway of box H/ACA RNA-guided pseudouridine formation

Xin Sheng Zhao, Shuang Li, K. Ye, 2012, Nucleic acids research.

Correction: Characterization of PUD-1 and PUD-2, Two Proteins Up-Regulated in a Long-Lived daf-2 Mutant

M. Dong, S. Mitani, Yu-Xin Li, 2013, PLoS ONE.

Stepwise and dynamic assembly of the earliest precursors of small ribosomal subunits in yeast

She Chen, K. Ye, Gaihong Cai, 2016, Genes & development.

Nop9 binds the central pseudoknot region of 18S rRNA

B. Wang, K. Ye, 2017, Nucleic acids research.

Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate

M. Dong, D. Tan, K. Ye, 2018, Protein & Cell.

Structural and functional analysis of Utp24, an endonuclease for processing 18S ribosomal RNA

K. Ye, Yifei Du, W. An, 2018, PloS one.

Dosage Compensation Drosophila Domain during Structural Basis of X Chromosome Dna Recognition by the Msl2 Cxc Material Supplemental

K. Ye, Jia Wang, R. Villa, 2022 .

Crystal structure and centromere binding of the plasmid segregation protein ParB from pCXC100

K. Ye, Xing Zhu, Yi Zhang, 2010, Nucleic acids research.

Single modification at position 14 of siRNA strand abolishes its gene‐silencing activity by decreasing both RISC loading and target degradation

K. Ye, Zicai Liang, Quan Du, 2013, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers

M. Dong, N. Huang, Yue-He Ding, 2019, Nature Communications.

A Fast Lysine Cross-linker DOPA Enables Mass Spectrometry Analyses of Protein Unfolding and Weak Protein-protein Interactions

M. Dong, N. Huang, Y. Zhou, 2020, bioRxiv.

Structural mechanism of protein recognition by the FW domain of autophagy receptor Nbr1

K. Ye, J. Sui, L. Du, 2022, Nature Communications.

Purification, crystallization and preliminary X-ray diffraction analysis of Imp3 in complex with an Mpp10 peptide involved in yeast ribosome biogenesis.

K. Ye, Sanduo Zheng, 2014, Acta crystallographica. Section F, Structural biology communications.

SnoRNP is essential for thermospermine-mediated development in Arabidopsis thaliana

K. Ye, Jiayang Li, C. Yi, 2022, Science China Life Sciences.

Molecular and structural mechanisms of ZZ domain-mediated cargo recognition by autophagy receptor Nbr1

M. Dong, K. Ye, Ying-Ying Wang, 2021, bioRxiv.

Size-independent and noncooperative recognition of dsRNA by the Rice stripe virus RNA silencing suppressor NS3.

K. Ye, Yi Xu, Ru Jia, 2010, Journal of molecular biology.

RNA silencing suppressor p21 of Beet yellows virus forms an RNA binding octameric ring structure.

D. Patel, K. Ye, 2005, Structure.

Calmodulin in complex with the first IQ motif of myosin-5a functions as an intact calcium sensor

K. Ye, Hai-Man Zhang, Xiang-dong Li, 2016, Proceedings of the National Academy of Sciences.

Structural basis for site-specific ribose methylation by box C/D RNA protein complexes

Jinzhong Lin, K. Ye, Jing Lu, 2011, Nature.

A potent human neutralizing antibody Fc-dependently reduces established HBV infections

K. Ye, Wenhui Li, J. Sui, 2017, eLife.

Recognition of small interfering RNA by a viral suppressor of RNA silencing

L. Malinina, D. Patel, K. Ye, 2003, Nature.

Maintenance of Nucleolar Homeostasis by CBX4 Alleviates Senescence and Osteoarthritis.

F. Tang, J. Qu, Weiqi Zhang, 2019, Cell reports.

The Plant-Specific Actin Binding Protein SCAB1 Stabilizes Actin Filaments and Regulates Stomatal Movement in Arabidopsis[C][W]

K. Ye, Jinfeng Zhao, Shanjin Huang, 2011, Plant Cell.

Plant Actin-binding Protein Scab1 Is Dimeric Actin Cross-linker with Atypical Pleckstrin Homology Domain * □ S , and Keqiong Ye (叶克穷) §1

K. Ye, Yan Guo, Yang Zhao, 2022 .

Solution Structure of MSL2 CXC Domain Reveals an Unusual Zn3Cys9 Cluster and Similarity to Pre-SET Domains of Histone Lysine Methyltransferases

K. Ye, Jia Wang, Yingang Feng, 2012, PloS one.

Structure of the Shq1–Cbf5–Nop10–Gar1 complex and implications for H/ACA RNP biogenesis and dyskeratosis congenita

Shuang Li, K. Ye, Jingqi Duan, 2011, The EMBO journal.

Correction: Molecular architecture of the 90S small subunit pre-ribosome

M. Dong, D. Tan, K. Ye, 2017, eLife.

Molecular architecture of the 90S small subunit pre-ribosome

M. Dong, D. Tan, K. Ye, 2017, eLife.

Development of an RNA–protein crosslinker to capture protein interactions with diverse RNA structures in cells

K. Ye, Yan Han, Jiangyun Wang, 2021, RNA.

Cryo-EM structure of yeast 90S preribosome at 3.4 Å resolution

K. Ye, Yifei Du, W. An, 2020, bioRxiv.

Functional regions in the 5′ external transcribed spacer of yeast pre-rRNA

K. Ye, J. Chen, Liman Zhang, 2020, RNA.

Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate

M. Dong, D. Tan, K. Ye, 2018, Protein & Cell.

Structural and functional analysis of ribosome assembly factor Efg1

K. Ye, S. Shu, 2018, Nucleic acids research.

Stepwise assembly of the earliest precursors of large ribosomal subunits in yeast

K. Ye, Fuquan Yang, Zhensheng Xie, 2017, Nucleic acids research.

Integrative structural analysis of the UTPB complex, an early assembly factor for eukaryotic small ribosomal subunits

Jinzhong Lin, K. Ye, Qi Sun, 2016, Nucleic acids research.

Structure of Utp21 Tandem WD Domain Provides Insight into the Organization of the UTPB Complex Involved in Ribosome Synthesis

Jinzhong Lin, K. Ye, Rongchang Chen, 2014, PloS one.

Structural and functional analysis of the U3 snoRNA binding protein Rrp9.

Jinzhong Lin, K. Ye, Liman Zhang, 2013, RNA.

Profiling of RNA ribose methylation in Arabidopsis thaliana

K. Ye, Jiayang Li, Songlin Wu, 2021, Nucleic acids research.

Structural organization of box C/D RNA-guided RNA methyltransferase

Jinzhong Lin, K. Ye, Liman Zhang, 2009, Proceedings of the National Academy of Sciences.

Cryo-EM structure of an early precursor of large ribosomal subunit reveals a half-assembled intermediate

M. Dong, D. Tan, K. Ye, 2018, Protein & Cell.

Structural mechanism of substrate RNA recruitment in H/ACA RNA-guided pseudouridine synthase.

K. Ye, Ling Li, Wei Wang, 2009, Molecular cell.

Crystal structure of an H/ACA box ribonucleoprotein particle

K. Ye, Ling Li, Keqiong Ye, 2006, Nature.

Functional organization of box C/D RNA-guided RNA methyltransferase

D. Lilley, K. Ye, Lin Huang, 2020, Nucleic acids research.

Crystal structure of Cmr2 suggests a nucleotide cyclase‐related enzyme in type III CRISPR‐Cas systems

K. Ye, Xing Zhu, 2012, FEBS letters.

Interaction between ribosome assembly factors Krr1 and Faf1 is essential for formation of small ribosomal subunit in yeast.

K. Ye, P. Lan, Sanduo Zheng, 2014, The Journal of biological chemistry.

, Ximing Liu and Yeast Formation of Small Ribosomal Subunit in Factors Krr 1 and Faf 1 is Essential for Interaction between Ribosome Assembly

K. Ye, P. Lan, Sanduo Zheng, 2014 .

Structure and RNA recognition of ribosome assembly factor Utp30

Jian-Fei Hu, K. Ye, Xing Zhu, 2017, RNA.

Characterization of PUD-1 and PUD-2, Two Proteins Up-Regulated in a Long-Lived daf-2 Mutant

M. Dong, S. Mitani, Yu-Xin Li, 2013, PloS one.

Molecular and structural mechanisms of ZZ domain‐mediated cargo selection by Nbr1

K. Ye, J. Sui, L. Du, 2021, The EMBO journal.

Crystal structure of human mitoNEET reveals distinct groups of iron–sulfur proteins

Jinzhong Lin, K. Ye, Jinfeng Wang, 2007, Proceedings of the National Academy of Sciences.

Structure and Molecular Evolution of CDGSH Iron-Sulfur Domains

Jinzhong Lin, K. Ye, Liman Zhang, 2011, PloS one.

Effects of charged amino‐acid mutation on the solution structure of cytochrome b5 and binding between cytochrome b5 and cytochrome c

K. Ye, Jinfeng Wang, Z. Huang, 2001, Protein science : a publication of the Protein Society.

Dimerization Mediated by a Divergent Forkhead-associated Domain Is Essential for the DNA Damage and Spindle Functions of Fission Yeast Mdb1.

K. Ye, L. Du, Shukun Luo, 2015, The Journal of biological chemistry.

H/ACA guide RNAs, proteins and complexes.

K. Ye, 2007, Current opinion in structural biology.

ACA guide RNAs , proteins and complexes

K. Ye, 2007 .

Characterization of protein unfolding by fast cross-linking mass spectrometry using di-ortho-phthalaldehyde cross-linkers

M. Dong, D. Tan, K. Ye, 2022, Nature Communications.

Interactions between subdomains in the partially folded state of staphylococcal nuclease.

K. Ye, J. Wang, G. Jing, 2000, Biochimica et biophysica acta.

Trifunctional cross-linker for mapping protein-protein interaction networks and comparing protein conformational states

Chao Liu, Si-Min He, Dan Tan, 2016, eLife.

Increasing the Depth of Mass-Spectrometry-Based Structural Analysis of Protein Complexes through the Use of Multiple Cross-Linkers.

Si-Min He, Sheng-Bo Fan, Meng-Qiu Dong, 2016, Analytical chemistry.

Cryo‐EM structure of fission yeast tetrameric α‐mannosidase Ams1

K. Ye, Ying-Ying Wang, L. Du, 2020, FEBS open bio.

Box C/D guide RNAs recognize a maximum of 10 nt of substrates

Jinzhong Lin, K. Ye, Zuxiao Yang, 2016, Proceedings of the National Academy of Sciences.

Self-association reaction of denatured staphylococcal nuclease fragments characterized by heteronuclear NMR.

K. Ye, J. Wang, 2001, Journal of molecular biology.

Structural mechanism of the phosphorylation-dependent dimerization of the MDC1 forkhead-associated domain

Ji Liao, Bo Xu, Jing Li, 2012, Nucleic acids research.

Ribosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold.

A. Serganov, D. Patel, K. Ye, 2002, European journal of biochemistry.

Structural basis of X chromosome DNA recognition by the MSL2 CXC domain during Drosophila dosage compensation

K. Ye, Yingang Feng, Jinfeng Wang, 2014, Genes & development.

Cmr4 is the slicer in the RNA-targeting Cmr CRISPR complex

K. Ye, Xing Zhu, 2014, Nucleic acids research.

RNA-guided pseudouridine synthase Reconstitution and structural analysis of the yeast box H / ACA Material Supplemental

Shuang Li, K. Ye, Bing Yang, 2011 .

Landscape of RNA pseudouridylation in archaeon Sulfolobus islandicus

K. Ye, Songlin Wu, Yuqian Li, 2024, Nucleic acids research.

Complicated target recognition by archaeal box C/D guide RNAs.

K. Ye, Jiayin Wang, Songlin Wu, 2023, Science China. Life sciences.

Structural biology of RNA silencing and its functional implications.

T. Tuschl, L. Malinina, D. Patel, 2006, Cold Spring Harbor symposia on quantitative biology.

High resolution landscape of ribosomal RNA processing and surveillance

K. Ye, Weidong An, Yunxiao Yan, 2024, Nucleic acids research.