D. Baddeley

发表

Three-dimensional sub-100 nm super-resolution imaging of biological samples using a phase ramp in the objective pupil

C. Soeller, D. Baddeley, M. Cannell, 2011 .

Optical single-channel resolution imaging of the ryanodine receptor distribution in rat cardiac myocytes

Isuru D. Jayasinghe, C. Soeller, D. Baddeley, 2009, Proceedings of the National Academy of Sciences.

4D Super-Resolution Microscopy with Conventional Fluorophores and Single Wavelength Excitation in Optically Thick Cells and Tissues

David Baddeley, Isuru D. Jayasinghe, Mark B. Cannell, 2011, PloS one.

Biological Insight from Super-Resolution Microscopy: What We Can Learn from Localization-Based Images.

J. Bewersdorf, D. Baddeley, 2018, Annual review of biochemistry.

True Molecular Scale Visualization of Variable Clustering Properties of Ryanodine Receptors

Isuru D. Jayasinghe, Alexander H. Clowsley, Alexander H Clowsley, 2018, Cell reports.

TREM2 Haplodeficiency in Mice and Humans Impairs the Microglia Barrier Function Leading to Decreased Amyloid Compaction and Severe Axonal Dystrophy

J. Grutzendler, S. Paul, T. Bird, 2016, Neuron.

SPDM: light microscopy with single-molecule resolution at the nanoscale

M. Hausmann, D. Baddeley, J. Reymann, 2008 .

Light-induced dark states of organic fluochromes enable 30 nm resolution imaging in standard media.

David Baddeley, Isuru D. Jayasinghe, Christian Soeller, 2009, Biophysical journal.

Working memory. In G. H. Bower (Ed.), The psychology of learning andmotivation: Advances in research and theory (Vol. 8, pp. 47-89).

A Baddeley, G. J. Hitch, A. Baddeley, 1974 .

A Programmable DNA Origami Platform for Organizing Intrinsically Disordered Nucleoporins within Nanopore Confinement.

David Baddeley, Chenxiang Lin, Bart W. Hoogenboom, 2018, ACS nano.

Observation of the molecular organization of calcium release sites in fast- and slow-twitch skeletal muscle with nanoscale imaging

Isuru D. Jayasinghe, C. Soeller, D. Baddeley, 2014, Journal of The Royal Society Interface.

Spontaneous Activity Patterns Are Altered in the Developing Visual Cortex of the Fmr1 Knockout Mouse

D. Baddeley, J. Cheyne, C. Lohmann, 2019, Front. Neural Circuits.

Single-molecule turnover dynamics of actin and membrane coat proteins in clathrin-mediated endocytosis

Michael M. Lacy, D. Baddeley, J. Berro, 2019, bioRxiv.

Junctophilin-2 in the nanoscale organisation and functional signalling of ryanodine receptor clusters in cardiomyocytes

Isuru D. Jayasinghe, C. Soeller, D. Baddeley, 2016, Journal of Cell Science.

Three-Dimensional and Chemical Mapping of Intracellular Signaling Nanodomains in Health and Disease with Enhanced Expansion Microscopy

Alexander H. Clowsley, Alexander H Clowsley, Hannah M. Kirton, 2019, ACS nano.

Practical Aspects of Localization Microscopy

C. Soeller, D. Baddeley, M. Cannell, 2019, Fundamentals of Fluorescence Imaging.

Simultaneously Measuring Image Features and Resolution in Live-Cell STED Images

Andrew E. S. Barentine, J. Bewersdorf, Lena K. Schroeder, 2017, bioRxiv.

Imaging of the Ryanodine Receptor Distribution in Rat Cardiac Myocytes with Optical Single Channel Resolution

Isuru D Jayasinghe, C. Soeller, D. Baddeley, 2010 .

Far-Field Fluorescence Microscopy of Cellular Structures at Molecular Optical Resolution

M. Hausmann, D. Baddeley, C. Cremer, 2010 .

Nanosizing by spatially modulated illumination (SMI) microscopy and applications to the nucleus.

U. Birk, D. Baddeley, C. Cremer, 2009, Methods in molecular biology.

Single-molecule imaging of the BAR-domain protein Pil1p reveals filament-end dynamics

Michael M. Lacy, D. Baddeley, J. Berro, 2017, Molecular biology of the cell.

New single-molecule imaging of the eisosome BAR domain protein Pil1p reveals filament-like dynamics

Michael M. Lacy, D. Baddeley, J. Berro, 2016, bioRxiv.

An integrated platform for high-throughput nanoscopy

Andrew E. S. Barentine, Michael R. Grace, Juliana Rios Chen, 2022, bioRxiv.

Fluorogenic DNA-PAINT for faster, low-background super-resolution imaging

Chenxiang Lin, J. Bewersdorf, Yongdeng Zhang, 2022, Nature Methods.

Fluorogenic probe for fast 3D whole-cell DNA-PAINT

Chenxiang Lin, J. Bewersdorf, Yongdeng Zhang, 2020, bioRxiv.

TREM2 Haplodeficiency in Mice and Humans Impairs the Microglia Barrier Function Leading to Decreased Amyloid Compaction and Severe Axonal Dystrophy

J. Grutzendler, S. Paul, T. Bird, 2016, Neuron.

3D super-resolution microscopy performance and quantitative analysis assessment using DNA-PAINT and DNA origami test samples

David Baddeley, Christian Soeller, Tobias Lutz, 2019, bioRxiv.

Super-resolution fluorescence imaging to study cardiac biophysics: α-actinin distribution and Z-disk topologies in optically thick cardiac tissue slices.

David Baddeley, Isuru D. Jayasinghe, Christian Soeller, 2014, Progress in biophysics and molecular biology.

It's clearly the heart! Optical transparency, cardiac tissue imaging, and computer modelling.

Jesse L. Ashton, I. Efimov, B. Smaill, 2021, Progress in biophysics and molecular biology.

A stable, high refractive index, switching buffer for super-resolution imaging

C. Soeller, J. Bewersdorf, Lena K. Schroeder, 2018 .

Spatial quantitative analysis of fluorescently labeled nuclear structures: Problems, methods, pitfalls

H. Burkhardt, P. J. Verveer, L. Fahrmeir, 2008, Chromosome Research.

Model based precision structural measurements on barely resolved objects

D Baddeley, Y Weiland, C Batram, 2010, Journal of microscopy.

High precision size measurement of centromere 8 and the 8q24/c-myc gene region in metaphase and interphase human fibroblasts indicate differential condensation.

G. Kreth, D. Baddeley, C. Batram, 2008, Journal of structural biology.

Two-color intranuclear distance measurements of gene regions in human lymphocytes

G. Kreth, S. Fenz, H. Mathée, 2007, European Conference on Biomedical Optics.

Dynamic nanoscale morphology of the ER surveyed by STED microscopy

Andrew E. S. Barentine, J. Bewersdorf, Lena K. Schroeder, 2018, The Journal of cell biology.

Increased collagen within the transverse tubules in human heart failure

C. Soeller, C. D. dos Remedios, D. Baddeley, 2017, Cardiovascular research.

Examination of the subsarcolemmal tubular system of mammalian skeletal muscle fibers.

Isuru D. Jayasinghe, C. Soeller, D. Baddeley, 2013, Biophysical journal.

3D Multicolor Nanoscopy at 10,000 Cells a Day

David Baddeley, Michael R. Grace, Joerg Bewersdorf, 2019 .

Optimal Detection of Fusion Pore Dynamics Using Polarized Total Internal Reflection Fluorescence Microscopy

D. Baddeley, E. Karatekin, J. Nikolaus, 2021, Frontiers in Molecular Biosciences.

Visualization of Localization Microscopy Data

David Baddeley, Christian Soeller, Mark B Cannell, 2010, Microscopy and Microanalysis.

Local protein/gene density measurements using SMI microscopy

David Baddeley, Christoph Cremer, Udo Birk, 2006, SPIE Photonics Europe.

Nanostructure analysis using spatially modulated illumination microscopy

David Baddeley, Christoph Cremer, Yanina Weiland, 2003, Nature Protocols.

Measurement of replication structures at the nanometer scale using super-resolution light microscopy

U. Birk, H. Leonhardt, M. C. Cardoso, 2009, Nucleic acids research.

Using conventional fluorescent markers for far‐field fluorescence localization nanoscopy allows resolution in the 10‐nm range

D. Baddeley, A. Urich, R. Kaufmann, 2009, Journal of microscopy.

High-precision structural analysis of subnuclear complexes in fixed and live cells via spatially modulated illumination (SMI) microscopy

David Baddeley, Werner Stadter, Christoph Cremer, 2008, Chromosome Research.

Structured illumination microscopy of autofluorescent aggregations in human tissue.

David Baddeley, Rainer Heintzmann, Christoph Cremer, 2011, Micron.

SPDM: single molecule superresolution of cellular nanostructures

David Baddeley, Christoph Cremer, Roman Amberger, 2009, BiOS.

Spatially modulated illumination microscopy using one objective lens

U. Birk, D. Baddeley, C. Cremer, 2007 .

Nanostructure of specific chromatin regions and nuclear complexes

H. Mathée, U. Birk, D. Baddeley, 2005, Histochemistry and Cell Biology.

3D super-resolution microscopy performance and quantitative analysis assessment using DNA-PAINT and DNA origami test samples

Christian Soeller, Tobias Lutz, David Baddeley, 2019, bioRxiv.

4Pi microscopy deconvolution with a variable point-spread function.

David Baddeley, Christoph Cremer, D. Baddeley, 2006, Applied optics.

N‐terminal SAP97 isoforms differentially regulate synaptic structure and postsynaptic surface pools of AMPA receptors

C. Garner, J. Montgomery, C. Soeller, 2017, Hippocampus.

Two-colour live-cell nanoscale imaging of intracellular targets

Edward S. Allgeyer, J. Rothman, D. Toomre, 2016, Nature Communications.

Cholesterol Increases the Openness of SNARE-Mediated Flickering Fusion Pores.

D. Baddeley, B. O’Shaughnessy, E. Karatekin, 2016, Biophysical journal.

Nanoscale Organisation of Ryanodine Receptors and Junctophilin-2 in the Failing Human Heart

C. Soeller, C. D. dos Remedios, D. Baddeley, 2021, Frontiers in Physiology.

Epigenetic regulation of promiscuous gene expression in thymic medullary epithelial cells

K. Willecke, D. Baddeley, B. Kyewski, 2010, Proceedings of the National Academy of Sciences.

Nanoscale subcellular architecture revealed by multicolor 3D salvaged fluorescence imaging

P. De Camilli, J. Rothman, J. Ries, 2019, bioRxiv.

PYME: an integrated platform for high-throughput nanoscopy

Andrew E. S. Barentine, Michael R. Grace, Yu Lin, 2022, Biophysical Journal.

Nanoscale subcellular architecture revealed by multicolor three-dimensional salvaged fluorescence imaging

P. De Camilli, J. Rothman, J. Ries, 2020, Nature Methods.

S-Palmitoylation Sorts Membrane Cargo for Anterograde Transport in the Golgi.

J. Rothman, D. Toomre, D. Baddeley, 2018, Developmental cell.

Nanoscale organization of junctophilin-2 and ryanodine receptors within peripheral couplings of rat ventricular cardiomyocytes.

Isuru D. Jayasinghe, C. Soeller, D. Baddeley, 2012, Biophysical journal.

Super-resolution imaging of EC coupling protein distribution in the heart.

David Baddeley, Christian Soeller, C. Soeller, 2013, Journal of molecular and cellular cardiology.

Nanoscale analysis of ryanodine receptor clusters in dyadic couplings of rat cardiac myocytes.

Isuru D. Jayasinghe, C. Soeller, D. Baddeley, 2015, Journal of molecular and cellular cardiology.

Nano-scale size holes in ER sheets provide an alternative to tubules for highly-curved membranes

Andrew E. S. Barentine, J. Bewersdorf, Lena K. Schroeder, 2017, bioRxiv.

The nanoscale organization of reticulon 4 shapes local endoplasmic reticulum structure in situ

J. Bewersdorf, D. Baddeley, Jonathan Tyson, 2023, bioRxiv.

Combination of structured illumination and single molecule localization microscopy in one setup

Rainer Heintzmann, Rainer Heintzmann, Sabrina Rossberger, 2013 .

Combining confocal and single molecule localisation microscopy: A correlative approach to multi-scale tissue imaging.

Isuru D. Jayasinghe, C. Soeller, D. Baddeley, 2015, Methods.

A novel physiological role for ARF1 in the formation of bidirectional tubules from the Golgi

J. Rothman, D. Toomre, A. Schepartz, 2017, Molecular biology of the cell.

The nanoscale organization of reticulon 4 shapes local endoplasmic reticulum structure in situ

J. Bewersdorf, D. Baddeley, Jonathan Tyson, 2023, The Journal of cell biology.

Extracting nanoscale membrane morphology from single-molecule localizations.

J. Bewersdorf, D. Baddeley, Lukas A. Fuentes, 2023, Biophysical journal.

Extracting nanoscale membrane morphology from single-molecule localizations

J. Bewersdorf, D. Baddeley, Lukas A. Fuentes, 2023, bioRxiv.

PYMEVisualize: an open-source tool for exploring 3D super-resolution data

David Baddeley, Christian Soeller, Andrew E. S. Barentine, 2020, Nature Methods.

Nanoscale subcellular architecture revealed by multicolor 3D salvaged fluorescence imaging

P. De Camilli, J. Rothman, J. Ries, 2019, Nature Methods.

The nanoscale organization of reticulon 4 shapes local endoplasmic reticulum structure in situ

J. Bewersdorf, D. Baddeley, Jonathan Tyson, 2023, bioRxiv.

Detecting nano-scale protein clustering

D. Baddeley, 2015, Nature Methods.

Combination of structured illumination and single molecule localization microscopy in one setup

U. Birk, R. Heintzmann, D. Baddeley, 2013 .