L. Martignetti

发表

ROMA: Representation and Quantification of Module Activity from Target Expression Data

E. Barillot, E. Bonnet, L. Calzone, 2016, Front. Genet..

Quantitative Proteome Landscape of the NCI-60 Cancer Cell Lines

Ludovic C. Gillet, C. Sander, P. Bork, 2019, iScience.

Proteogenomic heterogeneity of localized human prostate cancer progression

María Rodríguez Martínez, Nora C. Toussaint, R. Aebersold, 2020 .

Convergent network effects along the axis of gene expression during prostate cancer progression

María Rodríguez Martínez, Nora C. Toussaint, R. Aebersold, 2020, Genome biology.

Convergent network effects along the axis of gene expression during prostate cancer progression

María Rodríguez Martínez, Nora C. Toussaint, R. Aebersold, 2020, bioRxiv.

Antagonism Pattern Detection between MicroRNA and Target Expression in Ewing’s Sarcoma

Andrei Zinovyev, Emmanuel Barillot, Loredana Martignetti, 2012, PloS one.

Classification of gene signatures for their information value and functional redundancy

E. Barillot, N. Blüthgen, L. Calzone, 2017, bioRxiv.

Cell-ID: gene signature extraction and cell identity recognition at individual cell level

L. Martignetti, A. Rausell, E. Six, 2020 .

Universal power law behaviors in genomic sequences and evolutionary models.

L. Martignetti, M. Caselle, 2007, Physical review. E, Statistical, nonlinear, and soft matter physics.

A review of computational approaches detecting microRNAs involved in cancer

E. Barillot, L. Martignetti, A. Zinovyev, 2022 .

Identification of microRNA clusters cooperatively acting on epithelial to mesenchymal transition in triple negative breast cancer

E. Barillot, L. Martignetti, A. Zinovyev, 2018, bioRxiv.

Identification of microRNA clusters cooperatively acting on Epithelial to Mesenchymal Transition in Triple Negative Breast Cancer

E. Barillot, L. Martignetti, A. Zinovyev, 2018, bioRxiv.

Rapid proteotyping reveals cancer biology and drug response determinants in the NCI-60 cells

Ludovic C. Gillet, C. Sander, P. Bork, 2018, bioRxiv.

Integrated microRNA and proteome analysis of cancer datasets with MoPC

L. Martignetti, E. Ficarra, Marta Lovino, 2022, bioRxiv.

Severe hematopoietic stem cell inflammation compromises chronic granulomatous disease gene therapy

F. Rieux-Laucat, J. Casanova, C. Picard, 2023, Cell reports. Medicine.

Gene signature extraction and cell identity recognition at the single-cell level with Cell-ID

L. Martignetti, A. Rausell, E. Six, 2021, Nature Biotechnology.

Detection of miRNA regulatory effect on triple negative breast cancer transcriptome

E. Barillot, L. Martignetti, A. Zinovyev, 2015, BMC Genomics.

Classification of gene signatures for their information value and functional redundancy

Nils Blüthgen, Andrei Zinovyev, Emmanuel Barillot, 2017, npj Systems Biology and Applications.

Aberrant ERBB4-SRC Signaling as a Hallmark of Group 4 Medulloblastoma Revealed by Integrative Phosphoproteomic Profiling.

Emmanuel Barillot, Arnau Montagud, Loredana Martignetti, 2018, Cancer cell.

A review of computational approaches detecting microRNAs involved in cancer.

Andrei Zinovyev, Emmanuel Barillot, Loredana Martignetti, 2017, Frontiers in bioscience.

Conceptual and computational framework for logical modelling of biological networks deregulated in diseases

Andrei Zinovyev, Emmanuel Barillot, Arnau Montagud, 2019, Briefings Bioinform..

Mathematical Modelling of Molecular Pathways Enabling Tumour Cell Invasion and Migration

Emmanuel Barillot, Loredana Martignetti, Laurence Calzone, 2015, PLoS Comput. Biol..

Concomitant Notch activation and p53 deletion trigger epithelial-to-mesenchymal transition and metastasis in mouse gut

Inna Kuperstein, Emmanuel Barillot, Loredana Martignetti, 2014, Nature Communications.

Identification of Shortened 3′ untranslated Regions from Expression Arrays

Emmanuel Barillot, Loredana Martignetti, Andrei Yu. Zinovyev, 2012, J. Bioinform. Comput. Biol..

Urinary Exosomes of Patients with Cystic Fibrosis Unravel CFTR-Related Renal Disease

L. Martignetti, I. Guerrera, I. Sermet-Gaudelus, 2020, International journal of molecular sciences.

Network-Based Integration of Multi-Omics Data Identifies the Determinants of miR-491-5p Effects

E. Barillot, L. Martignetti, D. Loew, 2021, Cancers.

Representation and quantification Of Module Activity from omics data with rROMA

L. Calzone, L. Martignetti, A. Zinovyev, 2022, bioRxiv.

DrosOCB: a high resolution map of conserved non coding sequences in Drosophila

B. Jacq, L. Martignetti, C. Herrmann, 2007, 0710.1570.

Investigating the epi-miRNome: identification of epi-miRNAs using transfection experiments.

F. Orso, D. Taverna, L. Martignetti, 2019, Epigenomics.

Detection of miRNA regulatory effect on triple negative breast cancer transcriptome

Andrei Zinovyev, Emmanuel Barillot, Loredana Martignetti, 2015, BMC Genomics.

Representation and quantification of module activity from omics data with rROMA

L. Martignetti, A. Zinovyev, I. Sermet-Gaudelus, 2023, bioRxiv.