G. Pratt

发表

Allele-specific binding of RNA-binding proteins reveals functional genetic variants in the RNA

Gene W. Yeo, C. Burge, A. Urban, 2018, Nature Communications.

Robust transcriptome-wide discovery of RNA binding protein binding sites with enhanced CLIP (eCLIP)

Gene W. Yeo, M. Guttman, Eric L. Van Nostrand, 2016, Nature Methods.

Widespread RNA editing dysregulation in Autism Spectrum Disorders

Gene W. Yeo, D. Geschwind, X. Xiao, 2018, bioRxiv.

Widespread RNA editing dysregulation in brains from autistic individuals

Eric L Van Nostrand, Gene W Yeo, Xinshu Xiao, 2018, Nature Neuroscience.

Rbfox proteins regulate alternative mRNA splicing through evolutionarily conserved RNA bridges

Gene W. Yeo, T. Liang, D. Black, 2013, Nature Structural &Molecular Biology.

A Large-Scale Binding and Functional Map of Human RNA Binding Proteins

Gene W. Yeo, C. Burge, E. Lécuyer, 2017, bioRxiv.

Musashi-2 Attenuates AHR Signaling to Expand Human Hematopoietic Stem Cells

Gary D Bader, Gene W. Yeo, B. Wilhelm, 2016, Nature.

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

Gene W. Yeo, B. Graveley, Xiang-Dong Fu, 2020, Genome Biology.

Sequence, Structure and Context Preferences of Human RNA Binding Proteins

Christopher B. Burge, Eric L Van Nostrand, Gene W. Yeo, 2017, bioRxiv.

Evidence That Gene Activation and Silencing during Stem Cell Differentiation Requires a Transcriptionally Paused Intermediate State

R. Young, L. Laurent, M. Guenther, 2011, PloS one.

Regulation of RNA editing by RNA-binding proteins in human cells

Gene W. Yeo, X. Xiao, B. Graveley, 2019, Communications Biology.

Autonomous functionality of an upstream open reading frame in polycistronic mammalian mRNAs

G. Pratt, K. Takao, Y. Aizawa, 2018, bioRxiv.

map of human RNA-binding proteins.

M. Duff, C. Burge, E. V. Nostrand, 2020 .

Ultra-accurate Duplex Sequencing for the assessment of pretreatment ABL1 kinase domain mutations in Ph+ ALL

J. Radich, J. Pritchard, M. Konopleva, 2020, Blood Cancer Journal.

Distinct and shared functions of ALS-associated proteins TDP-43, FUS and TAF15 revealed by multisystem analyses

Gene W. Yeo, C. Burge, T. Liang, 2016, Nature Communications.

Sequence, Structure and Context Preferences of Human RNA Binding Proteins

Eric L Van Nostrand, Gene W Yeo, Gene W. Yeo, 2017, bioRxiv.

Principles of RNA processing from analysis of enhanced CLIP maps for 150 RNA binding proteins

Gene W. Yeo, B. Graveley, Xiang-Dong Fu, 2019, Genome Biology.

CRISPR/Cas9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins.

Eric L Van Nostrand, Gene W Yeo, Gene W. Yeo, 2017, Methods.

The Clothes Make the mRNA: Past and Present Trends in mRNP Fashion.

Gene W. Yeo, M. Moore, G. Pratt, 2015, Annual review of biochemistry.

A Temporal Chromatin Signature in Human Embryonic Stem Cells Identifies Regulators of Cardiac Development

Sean Thomas, Gordon Keller, Charles E. Murry, 2012, Cell.

SONAR Discovers RNA-Binding Proteins from Analysis of Large-Scale Protein-Protein Interactomes.

Gene W. Yeo, M. Washburn, L. Florens, 2016, Molecular cell.

Protein-RNA Networks Regulated by Normal and ALS-Associated Mutant HNRNPA2B1 in the Nervous System

Christopher B. Burge, Steven Finkbeiner, Gene W. Yeo, 2016, Neuron.

Protein-RNA Networks Re gulated by Normal and ALS-Associated Mutant HNRNPA 2 B 1 in the Nervous System Highlights

Gene W. Yeo, M. Ares, C. Burge, 2016 .

The Ro60 autoantigen binds endogenous retroelements and regulates inflammatory gene expression

Gene W. Yeo, L. Criswell, T. Behrens, 2015, Science.

Perspectives on ENCODE

Xintao Wei, Christopher B. Burge, Jason Liu, 2020, Nature.

RBP-Maps enables robust generation of splicing regulatory maps

Eric L Van Nostrand, Gene W Yeo, Gene W. Yeo, 2018, RNA.

Variation in single-nucleotide sensitivity of eCLIP derived from reverse transcription conditions.

Gene W. Yeo, Eric L. Van Nostrand, G. Pratt, 2017, Methods.

Transcriptome-wide identification of RNA-binding protein binding sites using seCLIP-seq

Eric L. Van Nostrand, G. Pratt, Alexander A. Shishkin, 2022, Nature Protocols.

Large-scale tethered function assays identify factors that regulate mRNA stability and translation

Jonathan C. Schmok, Gene W. Yeo, G. Pratt, 2020, Nature Structural & Molecular Biology.

Resources for the comprehensive discovery of functional RNA elements

Xintao Wei, Eric Lécuyer, Eurie L. Hong, 2015, bioRxiv.

Resource Resources for the Compre hensive Discovery of Functional RNA Elements Graphical

Eurie L. Hong, Gene W. Yeo, Jean M. Davidson, 2016 .

Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity.

Gene W. Yeo, G. Pratt, J. Lykke-Andersen, 2015, Molecular cell.

Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf 1 ATPase Activity Graphical Abstract Highlights

Gene W. Yeo, G. Pratt, J. Lykke-Andersen, 2015 .

Author Correction: A large-scale binding and functional map of human RNA-binding proteins

Gene W. Yeo, C. Burge, E. Lécuyer, 2021, Nature.

Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).

Eric L. Van Nostrand, G. Pratt, C. Gelboin-Burkhart, 2017, Methods in molecular biology.

Regulation of RNA editing by RNA-binding proteins in human cells

Gene W. Yeo, X. Xiao, B. Graveley, 2019, Communications Biology.

Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival.

Gene W. Yeo, C. Burge, T. Liang, 2016, Cell reports.

Regulation of RNA editing by RNA-binding proteins in human cells

Gene W. Yeo, X. Xiao, B. Graveley, 2019, Communications Biology.

Adopting Duplex Sequencing™ Technology for Genetic Toxicity Testing: A Proof-of-Concept Mutagenesis Experiment with N-Ethyl-N-Nitrosourea (ENU)-Exposed Rats

Elizabeth K. Schmidt, J. Auman, K. Witt, 2023, bioRxiv.

Adopting Duplex Sequencing Technology for Genetic Toxicity Testing: A Proof-of-Concept Mutagenesis Experiment with N-Ethyl-N-Nitrosourea (ENU)-Exposed Rats

Elizabeth K. Schmidt, K. Witt, G. Pratt, 2023, Mutation Research/Genetic Toxicology and Environmental Mutagenesis.

Resource Enhanced CLIP Uncovers IMP Protein-RNA Targets in Human Pluripotent Stem Cells Important for Cell Adhesion and Survival Graphical Abstract Highlights

Gene W. Yeo, C. Burge, T. Liang, 2016 .

Erratum to: Robust, Cost-Effective Profiling of RNA Binding Protein Targets with Single-end Enhanced Crosslinking and Immunoprecipitation (seCLIP).

Gene W. Yeo, Eric L. Van Nostrand, G. Pratt, 2017, Methods in molecular biology.

Target Discrimination in Nonsense-Mediated mRNA Decay Requires Upf1 ATPase Activity.

Gene W. Yeo, G. Pratt, J. Lykke-Andersen, 2015, Molecular cell.

A large-scale binding and functional map of human RNA-binding proteins

Gene W. Yeo, C. Burge, B. Graveley, 2020, Nature.

CRISPR / Cas 9-mediated integration enables TAG-eCLIP of endogenously tagged RNA binding proteins

Gene W. Yeo, Gabriel A. Pratt, G. Pratt, 2016 .

Musashi-2 Attenuates AHR Signaling to Expand Human Hematopoietic Stem Cells

Gary D Bader, Gene W. Yeo, B. Wilhelm, 2016, Nature.