J. Trimarchi

发表

A sequence-oriented comparison of gene expression measurements across different hybridization-based technologies

Daniel J. Park, Roger E Bumgarner, Ju Han Kim, 2006, Nature Biotechnology.

Genomic Analysis of Mouse Retinal Development

L. Ohno-Machado, W. Kuo, Haiyan Huang, 2004, PLoS biology.

Transcription: Sibling rivalry in the E2F family

Jeffrey M. Trimarchi, J. Trimarchi, J. Lees, 2002, Nature Reviews Molecular Cell Biology.

Comparison of hybridization-based and sequencing-based gene expression technologies on biological replicates

L. Ohno-Machado, T. Jenssen, E. Hovig, 2007, BMC Genomics.

Molecular heterogeneity of developing retinal ganglion and amacrine cells revealed through single cell gene expression profiling

Michael B. Stadler, B. Roska, C. Cepko, 2007, The Journal of comparative neurology.

Identification of molecular markers of bipolar cells in the murine retina

John Aach, Sarah E Ross, Michael E Greenberg, 2008, The Journal of comparative neurology.

Disentangling neural cell diversity using single-cell transcriptomics

Jens Hjerling-Leffler, Bosiljka Tasic, Bosiljka Tasic, 2016, Nature Neuroscience.

The Trim family of genes and the retina: Expression and functional characterization

Lauren A. Laboissonniere, J. Trimarchi, Rebecca Chowdhury, 2018, PloS one.

Single cell transcriptome profiling of developing chick retinal cells

Lauren A. Laboissonniere, J. Trimarchi, P. Liu, 2017, The Journal of comparative neurology.

E2f3 is critical for normal cellular proliferation.

J. Trimarchi, J. Lees, R. Verona, 2000, Genes & development.

invited review Noninvasive measurement of hydrogen and potassium ion ﬂux from single cells and epithelial structures

J. Trimarchi, P. Smith, P. Smith, 2000 .

Temporal requirement of the alternative-splicing factor Sfrs1 for the survival of retinal neurons

C. Cepko, J. Trimarchi, C. Punzo, 2008, Development.

Onecut1 and Onecut2 Play Critical Roles in the Development of the Mouse Retina

J. Trimarchi, G. M. Martin, Rebecca Chowdhury, 2014, PloS one.

Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.

C. Cepko, J. Trimarchi, Jillian J. Goetz, 2013, Developmental cell.

E2F-6, a member of the E2F family that can behave as a transcriptional repressor.

J. Trimarchi, K. Moberg, K. Moberg, 1998, Proceedings of the National Academy of Sciences of the United States of America.

Individual Retinal Progenitor Cells Display Extensive Heterogeneity of Gene Expression

Michael B. Stadler, C. Cepko, J. Trimarchi, 2008, PloS one.

Automatic correspondence of tags and genes (ACTG): a tool for the analysis of SAGE, MPSS and SBS data

Lucila Ohno-Machado, Winston Patrick Kuo, Pedro A. F. Galante, 2007, Bioinform..

The transcriptome of retinal Müller glial cells

Michael B. Stadler, B. Roska, C. Cepko, 2008, The Journal of comparative neurology.

Identification of genes expressed preferentially in the developing peripheral margin of the optic cup

C. Cepko, J. Trimarchi, Seo-Hee Cho, 2009, Developmental dynamics : an official publication of the American Association of Anatomists.

ALS-associated genes display CNS expression in the developing zebrafish.

Lauren A. Laboissonniere, J. Trimarchi, Rebecca Chowdhury, 2018, Gene expression patterns : GEP.

E2F4 is essential for normal erythrocyte maturation and neonatal viability.

R. Bronson, J. Trimarchi, C. Brugnara, 2000, Molecular cell.

Analysis of gene expression in wild‐type and Notch1 mutant retinal cells by single cell profiling

Michael B. Stadler, C. Cepko, J. Trimarchi, 2013, Developmental dynamics : an official publication of the American Association of Anatomists.

Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates

Kevin T. Beier, C. Cepko, J. Trimarchi, 2012, Proceedings of the National Academy of Sciences.

Development and diversification of retinal amacrine interneurons at single cell resolution

Michael B. Stadler, C. Cepko, J. Trimarchi, 2009, Proceedings of the National Academy of Sciences.

The E2F6 transcription factor is a component of the mammalian Bmi1-containing polycomb complex.

J. Trimarchi, J. Lees, J. Lees, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Making of a retinal cell: insights into retinal cell-fate determination.

J. Trimarchi, Rebecca Chowdhury, Jillian J. Goetz, 2014, International review of cell and molecular biology.

Coexpression of normally incompatible developmental pathways in retinoblastoma genesis.

J. Sage, Richard J Smeyne, J. Trimarchi, 2011, Cancer cell.

Validation of oligoarrays for quantitative exploration of the transcriptome

A. Frigessi, L. Ohno-Machado, I. Glad, 2008, BMC Genomics.

Proofreading-defective DNA polymerase II increases adaptive mutation in Escherichia coli.

J. Trimarchi, H. Cai, M. Goodman, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Molecular signatures of retinal ganglion cells revealed through single cell profiling

Lauren A. Laboissonniere, G. Schwartz, J. Trimarchi, 2019, Scientific Reports.

Adaptive reversion of a frameshift mutation in Escherichia coli by simple base deletions in homopolymeric runs.

J. Trimarchi, P. Foster, Patricia L. Foster, 1994, Science.

Two enzymes, both of which process recombination intermediates, have opposite effects on adaptive mutation in Escherichia coli.

J. Trimarchi, P. Foster, R. Maurer, 1996, Genetics.

Adaptive reversion of an episomal frameshift mutation in Escherichia coli requires conjugal functions but not actual conjugation.

J. Trimarchi, P. Foster, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Polo-Like Kinase 3 Appears Dispensable for Normal Retinal Development Despite Robust Embryonic Expression

Lauren A. Laboissonniere, J. Trimarchi, Andrea K Wester, 2016, PloS one.

Single-cell profiling of developing and mature retinal neurons.

J. Trimarchi, Jillian J. Goetz, 2012, Journal of visualized experiments : JoVE.

Bivalent intra-spike binding provides durability against emergent Omicron lineages: Results from a global consortium

Peter D. Crompton, B. Howie, Bjoern Peters, 2023, Cell Reports.

A primer on gene expression and microarrays for machine learning researchers

Lucila Ohno-Machado, Eun-Young Kim, Staal A. Vinterbo, 2004, J. Biomed. Informatics.

Transplantation of iPSC-derived TM cells rescues glaucoma phenotypes in vivo

Lauren A. Laboissonniere, V. Sheffield, J. Trimarchi, 2016, Proceedings of the National Academy of Sciences.

Thyroid hormone components are expressed in three sequential waves during development of the chick retina

C. Cepko, J. Trimarchi, S. Harpavat, 2008, BMC Developmental Biology.

Repeated evolution of eye loss in Mexican cavefish: Evidence of similar developmental mechanisms in independently evolved populations.

Lauren A. Laboissonniere, J. Trimarchi, A. Keene, 2020, Journal of experimental zoology. Part B, Molecular and developmental evolution.

Loss of Gq/11 Genes Does Not Abolish Melanopsin Phototransduction

Alan C. Rupp, J. Trimarchi, P. Kofuji, 2014, PloS one.

Transcriptome sequencing of single cells with Smart-Seq

J. Trimarchi, Jeffrey M Trimarchi, Jillian J Goetz, 2012, Nature Biotechnology.

AAV vectors engineered to target insulin receptor greatly enhance intramuscular gene delivery

M. Kay, J. Trimarchi, M. Farzan, 2020, Molecular therapy. Methods & clinical development.

Complementary feature selection from alternative splicing events and gene expression for phenotype prediction

Margaret L. Antonio, Paul E. Anderson, Robert C. Wilson, 2016, Bioinform..

Plasma-seq: a novel strategy for metastatic prostate cancer analysis

J. Trimarchi, Caitlin Farris, 2013, Genome Medicine.

Single-cell RNA-Seq of Defined Subsets of Retinal Ganglion Cells.

Lauren A. Laboissonniere, J. Trimarchi, S. Lee, 2017, Journal of visualized experiments : JoVE.

Identification of genes expressed preferentially in the developing peripheral margin of the optic cup

C. Cepko, J. Trimarchi, Seo-Hee Cho, 2009, Developmental dynamics : an official publication of the American Association of Anatomists.

Bmc Developmental Biology Thyroid Hormone Components Are Expressed in Three Sequential Waves during Development of the Chick Retina

C. Cepko, J. Trimarchi, Harpavat Sanjiv, 2022 .

Expression Profiling of Developing Zebrafish Retinal Cells.

Lauren A. Laboissonniere, J. Trimarchi, Rebecca Chowdhury, 2016, Zebrafish.

Transcription factor Olig2 defines subpopulations of retinal progenitor cells biased toward specific cell fates

Kevin T. Beier, C. Cepko, J. Trimarchi, 2012, Proceedings of the National Academy of Sciences.

Otx2 and Onecut1 promote the fates of cone photoreceptors and horizontal cells and repress rod photoreceptors.

C. Cepko, J. Trimarchi, Jillian J. Goetz, 2013, Developmental cell.