I. Patel

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Insular Microbiogeography: Three Pathogens as Exemplars.

David D. Chambliss, Kristen L. Beck, B. Weimer, 2019, Current issues in molecular biology.

The Pathogen-annotated Tracking Resource Network (PATRN) system: a web-based resource to aid food safety, regulatory science, and investigations of foodborne pathogens and disease.

S. Jackson, J. E. Leclerc, M. Mammel, 2013, Food microbiology.

Recent Advances in Molecular Technologies and Their Application in Pathogen Detection in Foods with Particular Reference to Yersinia

I. Patel, Jin Gui, 2011, Journal of pathogens.

Insular Microbiogeography: Three Pathogens as Exemplars

David D. Chambliss, Kristen L. Beck, B. Weimer, 2019, Microbial Ecology: Current Advances from Genomics, Metagenomics and Other Omics.

Insular microbiogeography

David D. Chambliss, Kristen L. Beck, B. Weimer, 2017, 1703.07454.

Prevalence, Distribution, and Phylogeny of Type Two Toxin-Antitoxin Genes Possessed by Cronobacter Species where C. sakazakii Homologs Follow Sequence Type Lineages

M. Mammel, I. Patel, G. Gopinath, 2019, Microorganisms.

Genomic characterization of malonate positive Cronobacter sakazakii serotype O:2, sequence type 64 strains, isolated from clinical, food, and environment samples

I. Patel, G. Gopinath, J. Gangiredla, 2018, Gut Pathogens.

Principles of Functional Genomic Analysis

D. O'Connor, T. Cebula, S. Jackson, 2008 .

DNA microarray-based assessment of virulence potential of Shiga toxin gene-carrying Escherichia coli O104:H7 isolated from feedlot cattle feces

C. Elkins, I. Patel, T. Nagaraja, 2018, PloS one.

Draft Genome Sequence of Cronobacter sakazakii GP1999, Sequence Type 145, an Epiphytic Isolate Obtained from the Tomato’s Rhizoplane/Rhizosphere Continuum

I. Patel, L. Eberl, G. Gopinath, 2017, Genome Announcements.

Genome-wide survey of efflux pump-coding genes associated with Cronobacter survival, osmotic adaptation, and persistence

Scott V. Nguyen, I. Patel, G. Gopinath, 2019 .

Investigation of potential Shiga toxin producing Escherichia coli (STEC) associated with a local foodborne outbreak using multidisciplinary approaches

C. Elkins, I. Patel, Niketa M. Jani, 2016 .

Haemorrhagic colitis associated with enterohaemorrhagic Escherichia coli O165 : H25 infection in a yearling feedlot heifer

I. Patel, R. Moxley, J. Gangiredla, 2015 .

Differential antibacterial response of chicken granulosa cells to invasion by Salmonella serovars.

I. Patel, U. Babu, K. Balan, 2016, Poultry science.

Characterization of Shiga Toxin Subtypes and Virulence Genes in Porcine Shiga Toxin-Producing Escherichia coli

P. Fratamico, I. Patel, J. Gangiredla, 2016, Front. Microbiol..

Genomic Analysis of Stress Response against Arsenic in Caenorhabditis elegans

I. Patel, Jada Lewis, S. Bozdag, 2013, PloS one.

Advancements in Microarray Utility for Detection and Tracking of Foodborne Microbes in the Genomic Era

C. Elkins, I. Patel, B. Tall, 2017 .

Genomic Analysis of Immune Response against Vibrio cholerae Hemolysin in Caenorhabditis elegans

J. E. Leclerc, I. Patel, Jada Lewis, 2012, PloS one.

Genetic Analysis of Virulence Potential of Escherichia coli O104 Serotypes Isolated From Cattle Feces Using Whole Genome Sequencing

C. Elkins, I. Patel, T. Nagaraja, 2018, Front. Microbiol..

Draft Genome Sequences of Escherichia coli O104 Strains of Bovine and Human Origin

C. Elkins, M. Mammel, I. Patel, 2017, Genome Announcements.

Phylogenomic Analysis of Salmonella enterica subsp. enterica Serovar Bovismorbificans from Clinical and Food Samples Using Whole Genome Wide Core Genes and kmer Binning Methods to Identify Two Distinct Polyphyletic Genome Pathotypes

M. Mammel, I. Patel, J. Gangiredla, 2022, Microorganisms.

Development and validation of an improved method for the detection of Salmonella in cinnamon bark and oregano leaves using the adsorbent beta zeolite in the pre-enrichment media.

M. Mammel, I. Patel, U. Babu, 2021, Food microbiology.

DNA Microarray-Based Genomic Characterization of the Pathotypes of Escherichia coli O26, O45, O103, O111, and O145 Isolated from Feces of Feedlot Cattle †.

I. Patel, T. Nagaraja, J. Gangiredla, 2019, Journal of food protection.

Draft Genome Sequences of 72 Isolates from All Four Species of Shigella

S. Jackson, C. Elkins, M. Mammel, 2018, Microbiology Resource Announcements.

Use of the Escherichia coli Identification Microarray for Characterizing the Health Risks of Shiga Toxin-Producing Escherichia coli Isolated from Foods.

C. Elkins, I. Patel, J. Gangiredla, 2016, Journal of food protection.

Linking Genomo- and Pathotype: Exploiting the Zebrafish Embryo Model to Investigate the Divergent Virulence Potential among Cronobacter spp.

I. Patel, S. Neuhauss, G. Gopinath, 2016, PloS one.

Culture-Based Quantification with Molecular Characterization of Non-O157 and O157 Enterohemorrhagic Escherichia coli Isolates from Rectoanal Mucosal Swabs of Feedlot Cattle.

I. Patel, G. Erickson, R. Moxley, 2018, Foodborne pathogens and disease.

Characterization of Cronobacter sakazakii Strains Originating from Plant-Origin Foods Using Comparative Genomic Analyses and Zebrafish Infectivity Studies

I. Patel, J. Gangiredla, B. Tall, 2022, Microorganisms.

Species-Wide Collection of Escherichia coli Isolates for Examination of Genomic Diversity

Susan R. Leonard, C. Elkins, M. Mammel, 2017, Genome Announcements.

Virulence, antimicrobial susceptibility and phylogenetic analysis of Cronobacter sakazakii isolates of food origins from Jordan

I. Patel, J. Gangiredla, B. Tall, 2022, Journal of applied microbiology.

A Microarray Based Approach for the Identification of Common Foodborne Viruses

T. Cebula, S. Jackson, M. Mammel, 2009, The open virology journal.

Use of a Pan–Genomic DNA Microarray in Determination of the Phylogenetic Relatedness among Cronobacter spp. and Its Use as a Data Mining Tool to Understand Cronobacter Biology

S. Jackson, M. Mammel, I. Patel, 2017, Microarrays.

The bacterial adaptive response gene, barA, encodes a novel conserved histidine kinase regulatory switch for adaptation and modulation of metabolism in Escherichia coli

T. Cebula, J. E. Leclerc, I. Patel, 2003, Molecular and Cellular Biochemistry.

An FDA bioinformatics tool for microbial genomics research on molecular characterization of bacterial foodborne pathogens using microarrays

James J. Chen, Weida Tong, Hong Fang, 2010, BMC Bioinformatics.

Genomic paradigms for food-borne enteric pathogen analysis at the USFDA: case studies highlighting method utility, integration and resolution

C. Elkins, I. Patel, M. Kotewicz, 2013, Food additives & contaminants. Part A, Chemistry, analysis, control, exposure & risk assessment.

Rapid Genomic-Scale Analysis of Escherichia coli O104:H4 by Using High-Resolution Alternative Methods to Next-Generation Sequencing

S. Jackson, C. Elkins, I. Patel, 2011, Applied and Environmental Microbiology.

FDA Escherichia coli Identification (FDA-ECID) Microarray: a Pangenome Molecular Toolbox for Serotyping, Virulence Profiling, Molecular Epidemiology, and Phylogeny

S. Jackson, C. Elkins, M. Mammel, 2016, Applied and Environmental Microbiology.

Detection and Identification of Common Food-Borne Viruses with a Tiling Microarray

S. Jackson, M. Mammel, I. Patel, 2011, The open virology journal.

Interrogating genomic diversity of E. coli O157:H7 using DNA tiling arrays.

Scott A Jackson, T. Cebula, S. Jackson, 2007, Forensic science international.

Analysis and Characterization of Proteins Associated with Outer Membrane Vesicles Secreted by Cronobacter spp.

I. Patel, M. Kothary, G. Gopinath, 2017, Front. Microbiol..

Draft Genome Sequences of the Escherichia coli Reference (ECOR) Collection

C. Elkins, M. Mammel, I. Patel, 2018, Microbiology Resource Announcements.

Investigating the global genomic diversity of Escherichia coli using a multi-genome DNA microarray platform with novel gene prediction strategies

T. Cebula, S. Jackson, J. E. Leclerc, 2011, BMC Genomics.

EVALUATION OF THE ROLE OF BarA-UvrY TWO-COMPONENT SYSTEM IN ESCHERICHIA COLI.

I. Patel, 2004 .

Integration of AI-2 Based Cell-Cell Signaling with Metabolic Cues in Escherichia coli

I. Patel, A. Coleman, S. Mukhopadhyay, 2016, PloS one.

A Proteomic and Transcriptomic Approach Reveals New Insight into β-methylthiolation of Escherichia coli Ribosomal Protein S12*

N. Costantino, D. Court, C. Elkins, 2010, Molecular & Cellular Proteomics.

Genome Sequences of Malonate-Positive Cronobacter sakazakii Serogroup O:2, Sequence Type 64 Strains CDC 1121-73 and GK1025, Isolated from Human Bronchial Wash and a Powdered Infant Formula Manufacturing Plant

I. Patel, M. Kothary, G. Gopinath, 2016, Genome Announcements.

Draft Genome Sequences of Escherichia albertii, Escherichia fergusonii, and Strains Belonging to Six Cryptic Lineages of Escherichia spp.

Susan R. Leonard, C. Elkins, M. Mammel, 2018, Genome Announcements.

Development of a Custom-Designed, Pan Genomic DNA Microarray to Characterize Strain-Level Diversity among Cronobacter spp.

S. Jackson, I. Patel, G. Gopinath, 2015, Front. Pediatr..

Analysis of the Molecular Diversity Among Cronobacter Species Isolated From Filth Flies Using Targeted PCR, Pan Genomic DNA Microarray, and Whole Genome Sequencing Analyses

S. Jackson, M. Mammel, I. Patel, 2020, Frontiers in Microbiology.

The Secretion of Toxins and Other Exoproteins of Cronobacter: Role in Virulence, Adaption, and Persistence

Scott V. Nguyen, I. Patel, G. Gopinath, 2020, Microorganisms.

Comparative Genomic Characterization of the Highly Persistent and Potentially Virulent Cronobacter sakazakii ST83, CC65 Strain H322 and Other ST83 Strains

I. Patel, G. Gopinath, J. Gangiredla, 2017, Front. Microbiol..

Draft genomes of Cronobacter sakazakii strains isolated from dried spices bring unique insights into the diversity of plant-associated strains

I. Patel, G. Gopinath, J. Gangiredla, 2018, Standards in genomic sciences.

Increased secretion of exopolysaccharide and virulence potential of a mucoid variant of Salmonella enterica serovar Montevideo under environmental stress.

I. Patel, G. Gopinath, B. Tall, 2017, Microbial pathogenesis.

Whole Genome Sequence Analyses-Based Assessment of Virulence Potential and Antimicrobial Susceptibilities and Resistance of Enterococcus faecium Strains Isolated from Commercial Swine and Cattle Probiotic Products.

M. Mammel, I. Patel, M. Tokach, 2022, Journal of Animal Science.

Comparison of Salmonella enterica serovar Bovismorbificans 2011 hummus outbreak strains with non-outbreak strains.

I. Patel, G. Gopinath, K. Jarvis, 2015, Food microbiology.

Variability and Bias in Microbiome Metagenomic Sequencing: an Interlaboratory Study Comparing Experimental Protocols

Stephanie L. Servetas, Keng C. Soh, Matthew G. Bakker, 2023, bioRxiv.

Genetic analysis of the roles of agaA, agaI, and agaS genes in the N-acetyl-D-galactosamine and D-galactosamine catabolic pathways in Escherichia coli strains O157:H7 and C

I. Patel, Amit Mukherjee, Zonglin Hu, 2013, BMC Microbiology.

Correction: Genetic analysis of the roles of agaA, agaI, and agaS genes in the N-acetyl-D-galactosamine and D-galactosamine catabolic pathways in Escherichia coli strains O157:H7 and C

I. Patel, Amit Mukherjee, Zonglin Hu, 2014, BMC Microbiology.