D. Mouchiroud

发表

Statistical analysis of vertebrate sequences reveals that long genes are scarce in GC-rich isochores

L. Duret, D. Mouchiroud, C. Gautier, 1995, Journal of Molecular Evolution.

Molecular phylogeny of rodents, with special emphasis on murids: evidence from nuclear gene LCAT.

D. Mouchiroud, M. Robinson, F. Catzeflis, 1997, Molecular phylogenetics and evolution.

Determinants of CpG islands: expression in early embryo and isochore structure.

L. Duret, D. Mouchiroud, L. Ponger, 2001, Genome research.

HOVERGEN: a database of homologous vertebrate genes.

M. Gouy, L. Duret, D. Mouchiroud, 1994, Nucleic acids research.

DigiPINS: a database for vertebrate exonic single nucleotide polymorphisms and its application to cancer association studies.

V. Navratil, S. Penel, D. Mouchiroud, 2008, Biochimie.

In silico whole-genome scanning of cancer-associated nonsynonymous SNPs and molecular characterization of a dynein light chain tumour variant

M. Gouy, V. Navratil, D. Mouchiroud, 2005, Oncogene.

Bioinformatic screening of human ESTs for differentially expressed genes in normal and tumor tissues

V. Navratil, D. Mouchiroud, C. Gautier, 2006, BMC Genomics.

In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions

D. Barash, V. Navratil, D. Mouchiroud, 2007, BMC Genomics.

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

L. Duret, D. Mouchiroud, 1999, Proceedings of the National Academy of Sciences of the United States of America.

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate.

L. Duret, D. Mouchiroud, Laurent Duret, 2000, Molecular biology and evolution.

Physiological oxygenation status is required for fully differentiated phenotype in kidney cortex proximal tubules.

G. Perrière, D. Mouchiroud, Elodie de Laplanche, 2006, American journal of physiology. Renal physiology.

Meiotic recombination favors the spreading of deleterious mutations in human populations

P. Stenson, D. Cooper, L. Duret, 2011, Human mutation.

The distribution of genes in the human genome.

G Bernardi, G. Bernardi, D. Mouchiroud, 1991, Gene.

GC-content evolution in mammalian genomes: the biased gene conversion hypothesis.

L. Duret, D. Mouchiroud, N. Galtier, 2001, Genetics.

Expected Relationship Between the Silent Substitution Rate and the GC Content: Implications for the Evolution of Isochores

Laurent Duret, Dominique Mouchiroud, L. Duret, 2002, Journal of Molecular Evolution.

SENCA: A Multilayered Codon Model to Study the Origins and Dynamics of Codon Usage

D. Mouchiroud, Fanny Pouyet, L. Gueguen, 2016, Genome biology and evolution.

The Sex-Specific Impact of Meiotic Recombination on Nucleotide Composition

D. Mouchiroud, C. Gautier, A. Popa, 2012, Genome biology and evolution.

Insect muscle actins differ distinctly from invertebrate and vertebrate cytoplasmic actins

M. Gouy, D. Mouchiroud, J. Prudhomme, 1992, Journal of Molecular Evolution.

A Gradual Process of Recombination Restriction in the Evolutionary History of the Sex Chromosomes in Dioecious Plants

D. Charlesworth, D. Mouchiroud, B. Vyskot, 2004, PLoS biology.

The compositional distribution of coding sequences and DNA molecules in humans and murids

G. Bernardi, D. Mouchiroud, C. Gautier, 2005, Journal of Molecular Evolution.

GC Content Evolution of the Human and Mouse Genomes: Insights from the Study of Processed Pseudogenes in Regions of Different Recombination Rates

L. Duret, D. Mouchiroud, J. Meunier, 2006, Journal of Molecular Evolution.

Recombination, meiotic expression and human codon usage

L. Duret, D. Mouchiroud, Marie Sémon, 2017, eLife.

The compositional properties of human genes

G. Bernardi, D. Mouchiroud, C. Gautier, 1991, Journal of Molecular Evolution.

Compositional compartmentalization and gene composition in the genome of vertebrates

G. Bernardi, G. Fichant, D. Mouchiroud, 2005, Journal of Molecular Evolution.

Vanishing GC-rich isochores in mammalian genomes.

L. Duret, D. Mouchiroud, N. Galtier, 2002, Genetics.

High Evolutionary Rates in Nuclear Genes of Squamates

D. Mouchiroud, S. Hughes, 2001, Journal of Molecular Evolution.

Unexpected observations after mapping LongSAGE tags to the human genome

Olivier Gandrillon, Laurent Duret, Céline Keime, 2007, BMC Bioinformatics.

HOPPSIGEN: a database of human and mouse processed pseudogenes

Adel Khelifi, Laurent Duret, Dominique Mouchiroud, 2005, Nucleic Acids Res..

Impact of changes in GC content on the silent molecular clock in murids.

D. Mouchiroud, C. Gautier, M. Robinson, 1997, Gene.

The Red Queen Model of Recombination Hotspots Evolution in the Light of Archaic and Modern Human Genomes

L. Duret, N. Lartillot, D. Mouchiroud, 2014, PLoS genetics.

GC-Biased Gene Conversion in Yeast Is Specifically Associated with Crossovers: Molecular Mechanisms and Evolutionary Significance

L. Duret, D. Mouchiroud, Yann Lesecque, 2013, Molecular biology and evolution.

JaDis: computing distances between nucleic acid sequences

Guy Perrière, Marc Robinson-Rechavi, Dominique Mouchiroud, 1999, Bioinform..

Sensitivity of the relative-rate test to taxonomic sampling.

M. Gouy, D. Mouchiroud, C. Gautier, 1998, Molecular biology and evolution.

Biased gene conversion drives codon usage in human and precludes selection on translation efficiency

L. Duret, D. Mouchiroud, Marie Sémon, 2017, bioRxiv.

Relationship between gene expression and GC-content in mammals: statistical significance and biological relevance.

Laurent Duret, Dominique Mouchiroud, Marie Sémon, 2005, Human molecular genetics.

Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins

Giorgio Bernardi, Dominique Mouchiroud, G. Bernardi, 1991, Journal of Molecular Evolution.

The compositional patterns of the avian genomes and their evolutionary implications

G. Bernardi, D. Mouchiroud, G. Sabeur, 1993, Journal of Molecular Evolution.

Neutral effect of recombination on base composition in Drosophila.

L. Duret, D. Mouchiroud, G. Marais, 2003, Genetical research.

Does recombination improve selection on codon usage? Lessons from nematode and fly complete genomes

L. Duret, D. Mouchiroud, G. Marais, 2001, Proceedings of the National Academy of Sciences of the United States of America.

The major compositional transitions in the vertebrate genome

G. Bernardi, D. Mouchiroud, S. Hughes, 2009, Journal of Molecular Evolution.

Silent substitutions in mammalian genomes and their evolutionary implications

G. Bernardi, D. Mouchiroud, C. Gautier, 1993, Journal of Molecular Evolution.

Codon usage changes and sequence dissimilarity between human and rat

D. Mouchiroud, C. Gautier, 1990, Journal of Molecular Evolution.

Nature and structure of human genes that generate retropseudogenes.

L. Duret, D. Mouchiroud, D Mouchiroud, 2000, Genome research.

Molecular evolution of viruses as seen by nucleic acid sequence study

Manolo Gouy, Dominique Mouchiroud, R. Grantham, 1985 .

Compositional patterns in vertebrate genomes: Conservation and change in evolution

G. Bernardi, G. Bernardi, D. Mouchiroud, 2005, Journal of Molecular Evolution.

Frequencies of synonymous substitutions in mammals are gene-specific and correlated with frequencies of nonsynonymous substitutions

Giorgio Bernardi, Dominique Mouchiroud, G. Bernardi, 2004, Journal of Molecular Evolution.

Evolution of isochores in rodents.

D. Mouchiroud, C. Gautier, M. Robinson, 1997, Molecular biology and evolution.

gemini: software for testing the effects of genotyping errors and multitubes approach for individual identification

Pierre Berthier, D. Mouchiroud, D. Pontier, 2002 .

Mining String Data under Similarity and Soft-Frequency Constraints: Application to Promoter Sequence Analysis

Jean-François Boulicaut, Michael R. Berthold, Ross D. King, 2009 .

CpGProD: identifying CpG islands associated with transcription start sites in large genomic mammalian sequences

Dominique Mouchiroud, Loïc Ponger, D. Mouchiroud, 2002, Bioinform..

Nuclear gene LCAT supports rodent monophyly.

D. Mouchiroud, L. Ponger, M. Robinson-Rechavi, 2000, Molecular biology and evolution.

High codon-usage changes in mammalian genes.

D. Mouchiroud, C. Gautier, 1988, Molecular biology and evolution.

Gene size reduction in the bacterial aphid endosymbiont, Buchnera.

D. Mouchiroud, J. Lobry, H. Charles, 1999, Molecular biology and evolution.

Identitag, a relational database for SAGE tag identification and interspecies comparison of SAGE libraries

Olivier Gandrillon, Laurent Duret, Céline Keime, 2004, BMC Bioinformatics.

In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions

D. Barash, V. Navratil, D. Mouchiroud, 2007, BMC Genomics.

Warm-blooded isochore structure in Nile crocodile and turtle.

D. Mouchiroud, S. Hughes, D. Zelus, 1999, Molecular biology and evolution.

Human coding and noncoding DNA: compositional correlations.

G Bernardi, G. Bernardi, D. Mouchiroud, 1996, Molecular phylogenetics and evolution.