J. Shi

Evolutionary trace analysis of TGF-beta and related growth factors: implications for site-directed mutagenesis.

T. Blundell, Jiye Shi, C. Innis, 2000, Protein engineering.

ABangle: characterising the VH-VL orientation in antibodies.

C. Deane, J. Shi, A. Fuchs, 2013, Protein engineering, design & selection : PEDS.

FUGUE: sequence-structure homology recognition using environment-specific substitution tables and structure-dependent gap penalties.

T L Blundell, J Shi, K Mizuguchi, 2001, Journal of molecular biology.

Sequence‐structure homology recognition by iterative alignment refinement and comparative modeling

T L Blundell, M G Williams, H Shirai, 2001, Proteins.