Z. Atak

发表

SCENIC: Single-cell regulatory network inference and clustering

J. Aerts, P. Geurts, S. Aerts, 2017, Nature Methods.

Exome sequencing identifies mutation in CNOT3 and ribosomal genes RPL5 and RPL10 in T-cell acute lymphoblastic leukemia

Stein Aerts, Gert Hulselmans, Jan Cools, 2012, Nature Genetics.

Decoding the regulatory landscape of melanoma reveals TEADS as regulators of the invasive cell state

S. Aerts, G. Halder, J. Marine, 2015, Nature Communications.

Prioritization of enhancer mutations by combining allele-specific chromatin accessibility with deep learning

S. Aerts, V. Christiaens, Z. Atak, 2019, bioRxiv.

Identification of cis-regulatory mutations generating de novo edges in personalized cancer gene regulatory networks

S. Aerts, H. Ceulemans, V. Christiaens, 2017, bioRxiv.

iRegulon: From a Gene List to a Gene Regulatory Network Using Large Motif and Track Collections

Stein Aerts, Gert Hulselmans, Valerie Christiaens, 2014, PLoS Comput. Biol..

Effects of different cooking methods on the chemical and physical properties of carrots and green peas

Z. Atak, F. Kaymak-Ertekin, M. Koç, 2017 .

Interpretation of allele-specific chromatin accessibility using cell state–aware deep learning

S. Aerts, V. Christiaens, Gert Hulselmans, 2021, Genome research.

i-cisTarget 2015 update: generalized cis-regulatory enrichment analysis in human, mouse and fly

Stein Aerts, Gert Hulselmans, Delphine Potier, 2015, Nucleic Acids Res..

Variations in the exome of the LNCaP prostate cancer cell line

S. Aerts, F. Claessens, Z. Atak, 2012, The Prostate.

Yin Yang 1 sustains biosynthetic demands during brain development in a stage-specific manner

Nicola Zamboni, Z. Atak, L. Sommer, 2019, Nature Communications.

Yin Yang 1 sustains biosynthetic demands during brain development in a stage-specific manner

Nicola Zamboni, Z. Atak, L. Sommer, 2019, Nature Communications.

Identification of High-Impact cis-Regulatory Mutations Using Transcription Factor Specific Random Forest Models

Stein Aerts, Hana Imrichová, Zeynep Kalender Atak, 2015, PLoS Comput. Biol..

The Drosophila Homologue of the Amyloid Precursor Protein Is a Conserved Modulator of Wnt PCP Signaling

Bassem A. Hassan, B. de Strooper, B. Hassan, 2013, PLoS biology.

Yin Yang 1 Orchestrates a Metabolic Program Required for Both Neural Crest Development and Melanoma Formation.

S. Aerts, R. Dummer, Nicola Zamboni, 2019, Cell stem cell.

A Multi-Omics Analysis of Metastatic Melanoma Identifies a Germinal Center-Like Tumor Microenvironment in HLA-DR-Positive Tumor Areas

L. Alexopoulos, F. De Smet, Z. Atak, 2021, Frontiers in Oncology.

A comprehensive inventory of TLX1 controlled long non-coding RNAs in T-cell acute lymphoblastic leukemia through polyA+ and total RNA sequencing

S. Aerts, F. Speleman, J. Vandesompele, 2018, Haematologica.

Exome sequencing identifies mutation of the ribosome in T-ALL

S. Aerts, B. Hassan, J. Soulier, 2013 .

Reduced Levels of Misfolded and Aggregated Mutant p53 by Proteostatic Activation

K. Ligon, S. Aerts, Jie Xu, 2020, Cells.

Developmental transcriptional control of mitochondrial homeostasis is required for activity-dependent synaptic connectivity

Bassem A. Hassan, T. Préat, S. Aerts, 2023, bioRxiv.