M. Guharoy

发表

Conservation and relative importance of residues across protein-protein interfaces

P. Chakrabarti, M. Guharoy, 2005, Proceedings of the National Academy of Sciences of the United States of America.

Intrinsic Structural Disorder in Cytoskeletal Proteins

Peter Tompa, Beata Szabo, Mainak Guharoy, 2013, Cytoskeleton.

Functional Diversity and Structural Disorder in the Human Ubiquitination Pathway

P. Tompa, M. Guharoy, Pallab Bhowmick, 2013, PloS one.

Characterization and prediction of the binding site in DNA-binding proteins: improvement of accuracy by combining residue composition, evolutionary conservation and structural parameters

Pinak Chakrabarti, Shrihari Sonavane, Mainak Guharoy, 2012, Nucleic acids research.

PRICE (PRotein Interface Conservation and Energetics): a server for the analysis of protein–protein interfaces

Pinak Chakrabarti, Mainak Guharoy, Arumay Pal, 2011, Journal of Structural and Functional Genomics.

Dissection, residue conservation, and structural classification of protein‐DNA interfaces

Pinak Chakrabarti, Mainak Guharoy, P. Chakrabarti, 2009, Proteins.

Distance-based metrics for comparing conformational ensembles of intrinsically disordered proteins

S. Wodak, P. Tompa, W. Vranken, 2020, bioRxiv.

DisProt: intrinsic protein disorder annotation in 2020

Silvio C. E. Tosatto, Arne Elofsson, Marco Necci, 2019, Nucleic Acids Res..

Computational approaches for inferring the functions of intrinsically disordered proteins

P. Tompa, W. Vranken, M. Guharoy, 2015, Front. Mol. Biosci..

Distance-Based Metrics for Comparing Conformational Ensembles of Intrinsically Disordered Proteins.

S. Wodak, P. Tompa, W. Vranken, 2020, Biophysical journal.

Tripartite degrons confer diversity and specificity on regulated protein degradation in the ubiquitin-proteasome system

P. Tompa, M. Guharoy, Pallab Bhowmick, 2016, Nature Communications.

Design Principles Involving Protein Disorder Facilitate Specific Substrate Selection and Degradation by the Ubiquitin-Proteasome System*

P. Tompa, M. Guharoy, Pallab Bhowmick, 2016, The Journal of Biological Chemistry.

Degron masking outlines degronons, co-degrading functional modules in the proteome

P. Tompa, M. Guharoy, Tamas Lazar, 2022, Communications biology.

The Balancing Act of Intrinsically Disordered Proteins: Enabling Functional Diversity while Minimizing Promiscuity.

S. Wodak, D. Kihara, P. Tompa, 2019, Journal of molecular biology.

Disordered Substrates of the 20S Proteasome Link Degradation with Phase Separation

P. Tompa, M. Guharoy, Tamas Lazar, 2018, Proteomics.

Conserved residue clusters at protein-protein interfaces and their use in binding site identification

Mainak Guharoy, Pinak Chakrabarti, P. Chakrabarti, 2010, BMC Bioinformatics.

Numerous proteins with unique characteristics are degraded by the 26S proteasome following monoubiquitination

A. Godzik, A. Ciechanover, P. Tompa, 2016, Proceedings of the National Academy of Sciences.

Critical assessment of protein intrinsic disorder prediction

M. Y. Lobanov, David C. Jones, K. Paliwal, 2021, Nature Methods.

Functional Advantages of Conserved Intrinsic Disorder in RNA-Binding Proteins

Peter Tompa, Mainak Guharoy, Mihaly Varadi, 2015, PloS one.

Secondary structure based analysis and classification of biological interfaces: identification of binding motifs in protein-protein interactions

Mainak Guharoy, Pinak Chakrabarti, P. Chakrabarti, 2007, Bioinform..

Community-wide assessment of protein-interface modeling suggests improvements to design methodology.

Kengo Kinoshita, Haruki Nakamura, Genki Terashi, 2011, Journal of molecular biology.

Unique Physicochemical Patterns of Residues in Protein-Protein Interfaces

Mainak Guharoy, Eva Schad, Peter Tompa, 2018, J. Chem. Inf. Model..

Reassessing buried surface areas in protein–protein complexes

J. Janin, P. Chakrabarti, M. Guharoy, 2013, Protein science : a publication of the Protein Society.

DisCons: a novel tool to quantify and classify evolutionary conservation of intrinsic protein disorder

Peter Tompa, Mainak Guharoy, Mihaly Varadi, 2015, BMC Bioinformatics.

Bioinformatics Approaches for Predicting Disordered Protein Motifs.

Peter Tompa, Pallab Bhowmick, Mainak Guharoy, 2015, Advances in experimental medicine and biology.

Empirical estimation of the energetic contribution of individual interface residues in structures of protein–protein complexes

Mainak Guharoy, Pinak Chakrabarti, P. Chakrabarti, 2009, J. Comput. Aided Mol. Des..

Degron masking outlines degronons, co-degrading functional modules in the proteome

P. Tompa, M. Guharoy, Tamas Lazar, 2022, Communications Biology.

Ensemble Methods Enable a New Definition for the Solution to Gas-Phase Transfer of Intrinsically Disordered Proteins.

Peter Tompa, Mainak Guharoy, P. Tompa, 2015, Journal of the American Chemical Society.

SNPeffect 5.0: large-scale structural phenotyping of protein coding variants extracted from next-generation sequencing data using AlphaFold models

F. Rousseau, G. Bottu, M. Guharoy, 2023, BMC Bioinformatics.

Critical assessment of protein intrinsic disorder prediction

Silvio C. E. Tosatto, Marco Necci, Damiano Piovesan, 2020, Nature Methods.

Side‐chain rotamer transitions at protein‐protein interfaces

Joël Janin, Mainak Guharoy, Charles H Robert, 2010, Proteins.

Conserved residue clusters at protein-protein interfaces and their use in binding site identification

P. Chakrabarti, M. Guharoy, 2010, BMC Bioinformatics.

Numerous proteins with unique characteristics are degraded by the 26S proteasome following monoubiquitination

A. Godzik, A. Ciechanover, P. Tompa, 2016, Proceedings of the National Academy of Sciences.

26 S Proteasome Following Monoubiquitination

A. Godzik, A. Ciechanover, P. Tompa, 2017 .

Design Principles Involving Protein Disorder Facilitate Specific Substrate Selection and Degradation by the Ubiquitin-Proteasome System*

P. Tompa, M. Guharoy, Pallab Bhowmick, 2016, The Journal of Biological Chemistry.