J. Adachi

发表

Plastid Genome Phylogeny and a Model of Amino Acid Substitution for Proteins Encoded by Chloroplast DNA

P. Waddell, M. Hasegawa, W. Martin, 2000, Journal of Molecular Evolution.

Model of amino acid substitution in proteins encoded by mitochondrial DNA

M. Hasegawa, J. Adachi, 1996, Journal of Molecular Evolution.

Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs

E. Birney, E. Lander, C. Bult, 2002, Nature.

Functional annotation of a full-length mouse cDNA collection

C. Bult, S. Batalov, Y. Matsuo, 2001, Nature.

MOLPHY version 2.3 : programs for molecular phylogenetics based on maximum likelihood

J. Adachi, Masami Hasegawa, 1996 .

Modeling of molecular evolution and maximumlikelihood inference of molecular phylogeny

J. Adachi, 1995 .

Identification of putative noncoding RNAs among the RIKEN mouse full-length cDNA collection.

M. Tomita, Y. Hayashizaki, D. Hume, 2003, Genome research.

Improved dating of the human/chimpanzee separation in the mitochondrial DNA tree: Heterogeneity among amino acid sites

M. Hasegawa, J. Adachi, 1995, Journal of Molecular Evolution.

Phylogenetic relationships among eutherian orders estimated from inferred sequences of mitochondrial proteins: Instability of a tree based on a single gene

Masami Hasegawa, Svante Pääbo, Axel Janke, 1994, Journal of Molecular Evolution.

Collection, Mapping, and Annotation of Over 28,000 cDNA Clones from japonica Rice

J. Kawai, Piero Carninci, Y. Hayashizaki, 2003, Science.

MOLPHY, programs for molecular phylogenetics

J. Adachi, Jun Adachi, 1992 .

Connecting sequence and biology in the laboratory mouse.

Martin Ringwald, Carol J Bult, Sridhar Ramachandran, 2003, Genome research.

Phylogenetic place of a mitochondria-lacking protozoan, Entamoeba histolytica, inferred from amino acid sequences of elongation factor 2

M. Hasegawa, J. Adachi, Ying Cao, 1994 .

Phylogenomics and Morphology of Extinct Paleognaths Reveal the Origin and Evolution of the Ratites

K. Kurokawa, H. Kishino, M. Hasegawa, 2017, Current Biology.

Angle: a Sequencing Errors Resistant Program for Predicting Protein Coding Regions in Unfinished Cdna

Yoichi Muraoka, Kana Shimizu, Jun Adachi, 2006, J. Bioinform. Comput. Biol..

Impact of alternative initiation, splicing, and termination on the diversity of the mRNA transcripts encoded by the mouse transcriptome.

Terry Gaasterland, Yoshihide Hayashizaki, Mihaela Zavolan, 2003, Genome research.

Tempo and mode of mitochondrial DNA evolution in vertebrates at the amino acid sequence level: Rapid evolution in warm-blooded vertebrates

M. Hasegawa, J. Adachi, Ying Cao, 1993, Journal of Molecular Evolution.

Amino acid substitution of proteins coded for in mitochondrial DNA during mammalian evolution.

M. Hasegawa, J. Adachi, 1992, Idengaku zasshi.

Phylogeny of whales: dependence of the inference on species sampling.

M. Hasegawa, J. Adachi, 1995, Molecular biology and evolution.

Eutherian phylogeny as inferred from mitochondrial DNA sequence data.

M. Hasegawa, J. Adachi, Ying Cao, 1994, Idengaku zasshi.

Eutherian phylogeny as inferred from mitochondrial DNA sequence data

M. Hasegawa, J. Adachi, Ying Cao, 1994 .

Phylogenetic place of mitochondrion-lacking protozoan, Giardia lamblia, inferred from amino acid sequences of elongation factor 2.

J. Adachi, T. Hashimoto, T. Kamaishi, 1995, Molecular biology and evolution.

CDS annotation in full-length cDNA sequence.

Yoshihide Hayashizaki, Takeya Kasukawa, Rintaro Saito, 2003, Genome research.

Phylogenetic place of guinea pigs: no support of the rodent-polyphyly hypothesis from maximum-likelihood analyses of multiple protein sequences.

M. Hasegawa, T. Yano, J. Adachi, 1994, Molecular biology and evolution.

Protein phylogeny gives a robust estimation for early divergences of eukaryotes: phylogenetic place of a mitochondria-lacking protozoan, Giardia lamblia.

M. Hasegawa, J. Adachi, T. Hashimoto, 1994, Molecular biology and evolution.

Chromosomal location and reorganization of the 45S and 5S rDNA in theBrachyscome lineariloba complex (Asteraceae)

J. Adachi, K. Fukui, K. Kosuge, 1997, Journal of Plant Research.

Effects of character weighting and species sampling on phylogeny reconstruction: a case study based on DNA sequence data in cetaceans.

M. Georges, M. Hasegawa, M. Milinkovitch, 1996, Genetics.

Phylogeny and biogeography of highly diverged freshwater fish species (Leuciscinae, Cyprinidae, Teleostei) inferred from mitochondrial genome analysis.

J. Adachi, M. Miya, M. Nishida, 2013, Gene.

The giant panda is closer to a bear, judged by α- and β-hemoglobin sequences

E. Otaka, M. Hasegawa, J. Adachi, 1993, Journal of Molecular Evolution.

Phylogeny of Eurasian Soricine Shrews (Insectivora, Mammalia) Inferred from the Mitochondrial Cytochrome b Gene Sequences

J. Adachi, S. Ohdachi, R. Masuda, 1997 .

Comment on the Quartet Puzzling Method for Finding Maximum-Likelihood Tree Topologies

M. Hasegawa, J. Adachi, Ying Cao, 1998 .

PSeq-Gen: an application for the Monte Carlo simulation of protein sequence evolution along phylogenetic trees

Jun Adachi, Andrew Rambaut, Nicholas C. Grassly, 1997, Comput. Appl. Biosci..

Early branchings in the evolution of eukaryotes: Ancient divergence of entamoeba that lacks mitochondria revealed by protein sequence data

T. Miyata, M. Hasegawa, J. Adachi, 1993, Journal of Molecular Evolution.

Phylogenetic position of kinetoplastid protozoa inferred from the protein phylogenies of elongation factors 1alpha and 2.

J. Adachi, T. Kamaishi, T. Hashimoto, 1996, Journal of biochemistry.

Phylogenetic place of kinetoplastid protozoa inferred from a protein phylogeny of elongation factor 1 alpha.

M. Hasegawa, J. Adachi, T. Hashimoto, 1995, Molecular and biochemical parasitology.

Phylogenetic place of a mitochondria-lacking protozoan, Entamoeba histolytica, inferred from amino acid sequences of elongation factor 2'.

M. Hasegawa, J. Adachi, Ying Cao, 1994, Idengaku zasshi.

Novel phylogeny of whales supported by total molecular evidence

M. Hasegawa, M. Milinkovitch, J. Adachi, 2009, Journal of Molecular Evolution.

Phylogenetic position of cetaceans relative to artiodactyls: reanalysis of mitochondrial and nuclear sequences.

M. Hasegawa, J. Adachi, 1996, Molecular biology and evolution.

Tempo and mode of synonymous substitutions in mitochondrial DNA of primates.

M. Hasegawa, J. Adachi, 1996, Molecular biology and evolution.

Rodent polyphyly?

M. Hasegawa, J. Adachi, Ying Cao, 1992, Nature.