Vasilis Ntranos

发表

Identification of transcriptional signatures for cell types from single-cell RNA-Seq

L. Pachter, P. Melsted, Vasilis Ntranos, 2018, bioRxiv.

A discriminative learning approach to differential expression analysis for single-cell RNA-seq

L. Pachter, P. Melsted, Vasilis Ntranos, 2019, Nature Methods.

The Barcode, UMI, Set format and BUStools

Lior Pachter, Páll Melsted, Vasilis Ntranos, 2018 .

An integrated transcriptomic and epigenomic atlas of mouse primary motor cortex cell types

Evan Z. Macosko, A. S. Booeshaghi, Ricky S. Adkins, 2020, bioRxiv.

One read per cell per gene is optimal for single-cell RNA-Seq

Martin Jinye Zhang, David Tse, Vasilis Ntranos, 2018, bioRxiv.

Fast and accurate single-cell RNA-Seq analysis by clustering of transcript-compatibility counts

L. Pachter, David Tse, Vasilis Ntranos, 2016, bioRxiv.

A multimodal cell census and atlas of the mammalian primary motor cortex

Satrajit S. Ghosh, Nicholas N. Foster, Evan Z. Macosko, 2020, Nature.

Fumarates target the metabolic-epigenetic interplay of brain-homing T cells in multiple sclerosis

A. Sharp, C. Watson, Vasilis Ntranos, 2019, Brain : a journal of neurology.

Genome-wide prediction of disease variants with a deep protein language model

Chun Jimmie Ye, Vasilis Ntranos, Nadav Brandes, 2022, bioRxiv.

Alpha cell dysfunction in type 1 diabetes is independent of a senescence program

Vasilis Ntranos, G. Brawerman, Peter J. Thompson, 2022, Frontiers in Endocrinology.

Targeted Elimination of Senescent Beta Cells Prevents Type 1 Diabetes.

Vasilis Ntranos, Mark Atkinson, Anil Bhushan, 2019, Cell metabolism.

memento: Generalized differential expression analysis of single-cell RNA-seq with method of moments estimation and efficient resampling

Chun Jimmie Ye, A. Marson, Rachel E. Gate, 2022, bioRxiv.

Determining sequencing depth in a single-cell RNA-seq experiment

Martin Jinye Zhang, David Tse, Vasilis Ntranos, 2020, Nature Communications.

A transcriptomic and epigenomic cell atlas of the mouse primary motor cortex

Evan Z. Macosko, A. S. Booeshaghi, Ricky S. Adkins, 2021, Nature.

Single-cell transcriptional profiling of human thymic stroma uncovers novel cellular heterogeneity in the thymic medulla

Mark S. Anderson, Chun Jimmie Ye, Julie B. Sneddon, 2021, Nature Communications.

The Barcode, UMI, Set format and BUStools

Lior Pachter, Páll Melsted, Vasilis Ntranos, 2018, bioRxiv.

Single-Cell Multiomics Defines Tolerogenic Extrathymic Aire-Expressing Populations with Unique Homology to Thymic Epithelium

Mark S. Anderson, Ansuman T. Satpathy, C. Lareau, 2021, bioRxiv.

A discriminative learning approach to differential expression analysis for single-cell RNA-seq

L. Pachter, P. Melsted, Vasilis Ntranos, 2019, Nature Methods.

Determining sequencing depth in a single-cell RNA-seq experiment

Martin Jinye Zhang, Vasilis Ntranos, David Tse, 2020, Nature Communications.

Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts

L. Pachter, David Tse, Vasilis Ntranos, 2016, bioRxiv.

Medoids in almost linear time via multi-armed bandits

David Tse, Govinda M. Kamath, Vivek Kumar Bagaria, 2017, AISTATS.

Extrathymic Aire-expressing cells support maternal-fetal tolerance

Mark S. Anderson, Stephan J Sanders, M. Sirota, 2021, Science Immunology.

Deterministic column subset selection for single-cell RNA-Seq

Lior Pachter, Shannon R McCurdy, Vasilis Ntranos, 2019, PloS one.

Expanding the Compute-and-Forward Framework: Unequal Powers, Signal Levels, and Multiple Linear Combinations

Giuseppe Caire, Bobak Nazer, Viveck R. Cadambe, 2015, IEEE Transactions on Information Theory.

Genome-wide prediction of disease variant effects with a deep protein language model

Chun Jimmie Ye, Vasilis Ntranos, Nadav Brandes, 2023, Nature Genetics.

Understanding Interdependency Through Complex Information Sharing

Marian Verhelst, Sofie Pollin, Christopher J. Ellison, 2015, Entropy.

Real-Time Multi-Criteria Social Graph Partitioning: A Game Theoretic Approach

Dimitris Papadias, Cyrus Shahabi, Huy Pham, 2015, SIGMOD Conference.

The genetic underpinnings of variable penetrance and expressivity of pathogenic mutations in cardiometabolic traits

S. Sankararaman, M. Udler, E. Kenny, 2023, medRxiv.

Ikaros is a principal regulator of Aire+ mTEC homeostasis, thymic mimetic cell diversity, and central tolerance

Vasilis Ntranos, H. Schjerven, M. Waterfield, 2023, Science Immunology.

A discriminative learning approach to differential expression analysis for single-cell RNA-seq

L. Pachter, Vasilis Ntranos, Lynn Yi, 2019, Nature Methods.

Fast and accurate single-cell RNA-seq analysis by clustering of transcript-compatibility counts

Lior Pachter, Govinda M. Kamath, Vasilis Ntranos, 2016, Genome Biology.

Single cell sequencing as a general variant interpretation assay

K. Farh, Vasilis Ntranos, Nadav Brandes, 2023, bioRxiv.

Sox9 regulates alternative splicing and pancreatic beta cell function

Gopika G. Nair, Vasilis Ntranos, M. Hebrok, 2024, Nature communications.

Column subset selection for single-cell RNA-Seq clustering

Lior Pachter, Vasilis Ntranos, Shannon R. McCurdy, 2017, bioRxiv.