D. Fushman

发表

Analyses of the effects of all ubiquitin point mutants on yeast growth rate.

Kelly M. Thayer, Benjamin P. Roscoe, D. Bolon, 2013, Journal of molecular biology.

Autoinhibition in Ras effectors Raf, PI3Kα, and RASSF5: a comprehensive review underscoring the challenges in pharmacological intervention

Ruth Nussinov, Hyunbum Jang, Chung-Jung Tsai, 2018, Biophysical Reviews.

Structural Basis for the Inhibitory Effects of Ubistatins in the Ubiquitin-Proteasome Pathway.

R. Deshaies, M. Glickman, D. Fushman, 2017, Structure.

Exploring the linkage dependence of polyubiquitin conformations using molecular modeling.

D. Fushman, O. Walker, Olivier Walker, 2010, Journal of molecular biology.

Recovering a representative conformational ensemble from underdetermined macromolecular structural data.

Andrej Sali, Dina Schneidman-Duhovny, Konstantin Berlin, 2013, Journal of the American Chemical Society.

Backbone dynamics of proteins studied by two‐dimensional heteronuclear NMR spectroscopy and molecular dynamics simulations

D. Fushman, H. Rüterjans, R. Weisemann, 1996 .

High relaxivity supramolecular adducts between human-liver fatty-acid-binding protein and amphiphilic Gd(III) complexes: structural basis for the design of intracellular targeting MRI probes.

Michael Assfalg, Henriette Molinari, Eliana Gianolio, 2012, Chemistry.

Polyubiquitin chains: polymeric protein signals.

D. Fushman, C. Pickart, 2004, Current opinion in chemical biology.

Solution Structure of the Proapoptotic Molecule BID A Structural Basis for Apoptotic Agonists and Antagonists

S. Korsmeyer, D. Cowburn, D. Fushman, 1999, Cell.

A binding cooperativity switch driven by synergistic structural swelling of an osmo-regulatory protein pair

Athi N. Naganathan, D. Fushman, Soundhararajan Gopi, 2019, Nature Communications.

Intrinsic protein disorder in oncogenic KRAS signaling

Ruth Nussinov, Jian Zhang, Hyunbum Jang, 2017, Cellular and Molecular Life Sciences.

Various strategies of using residual dipolar couplings in NMR‐driven protein docking: Application to Lys48‐linked di‐ubiquitin and validation against 15N‐relaxation data

Alexandre M J J Bonvin, A. Bonvin, D. Fushman, 2005, Proteins.

Solution Conformation of Lys63-linked Di-ubiquitin Chain Provides Clues to Functional Diversity of Polyubiquitin Signaling*

Aydin Haririnia, Michael Assfalg, D. Fushman, 2004, Journal of Biological Chemistry.

Neutron scattering in the biological sciences: progress and prospects.

Christopher B. Stanley, Jeremy C. Smith, M. Weinrich, 2018, Acta crystallographica. Section D, Structural biology.

Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin

K. Fidelis, L. Joachimiak, A. Joachimiak, 2022, bioRxiv.

Polyubiquitin-Photoactivatable Crosslinking Reagents for Mapping Ubiquitin Interactome Identify Rpn1 as a Proteasome Ubiquitin-Associating Subunit.

L. Kay, F. Glaser, H. Ovaa, 2017, Cell chemical biology.

Rub1/NEDD8, a ubiquitin-like modifier, is also a ubiquitin modifier

G. Dittmar, Joseph Longworth, R. Singh, 2020, bioRxiv.

Branching via K11 and K48 Bestows Ubiquitin Chains with a Unique Interdomain Interface and Enhanced Affinity for Proteasomal Subunit Rpn1.

D. Fushman, S. Krueger, A. Boughton, 2020, Structure.

Linkage-specific conformational ensembles of non-canonical polyubiquitin chains.

D. Fushman, C. Castañeda, C. M. Camara, 2016, Physical chemistry chemical physics : PCCP.

Unique structural, dynamical, and functional properties of k11-linked polyubiquitin chains.

D. Fushman, M. Nakasone, C. Castañeda, 2013, Structure.

Unexpected Trypsin Cleavage at Ubiquitinated Lysines

Meghan C. Burke, Meghan C Burke, C. Fenselau, 2015, Analytical chemistry.

Site-Specific Detection and Characterization of Ubiquitin Carbamylation.

D. Fushman, A. Majumdar, Westley Pawloski, 2022, Biochemistry.

Diverse polyubiquitin interaction properties of ubiquitin-associated domains

D. Fushman, C. Pickart, R. Varadan, 2005, Nature Structural &Molecular Biology.

Preparing to read the ubiquitin code: a middle-out strategy for characterization of all lysine-linked diubiquitins.

C. Fenselau, D. Fushman, C. Castañeda, 2014, Journal of mass spectrometry : JMS.

Investigation of the molecular motion of spin-labeled lysozyme in solution by the use of ESP spectra and electron spin relaxation

D. Fushman, V. Fedotov, V. Shlenkin, 1993 .

Deriving quantitative dynamics information for proteins and RNAs using ROTDIF with a graphical user interface

Konstantin Berlin, D. Fushman, A. Longhini, 2013, Journal of biomolecular NMR.

Determination of the backbone mobility of ribonuclease T1 and its 2'GMP complex using molecular dynamics simulations and NMR relaxation data.

D. Fushman, H. Rüterjans, O. Ohlenschläger, 1994, Journal of biomolecular structure & dynamics.

Hierarchical O(N) computation of small-angle scattering profiles and their associated derivatives.

R. Duraiswami, N. Gumerov, Konstantin Berlin, 2014, Journal of applied crystallography.

Fast approximations of the rotational diffusion tensor and their application to structural assembly of molecular complexes

Konstantin Berlin, Dianne P O'Leary, D. O’Leary, 2011, Proteins.

Improvement and analysis of computational methods for prediction of residual dipolar couplings.

D. O’Leary, Konstantin Berlin, D. Fushman, 2009, Journal of magnetic resonance.

Proteomic identification and analysis of K63-linked ubiquitin conjugates.

Joe R. Cannon, C. Fenselau, D. Fushman, 2012, Analytical chemistry.

Preparing to read the ubiquitin code: characterization of ubiquitin trimers by top-down mass spectrometry.

C. Fenselau, D. Fushman, Yeji Kim, 2016, Journal of mass spectrometry : JMS.

Long-lived states to monitor protein unfolding by proton NMR.

G. Bodenhausen, D. Fushman, P. Vasos, 2011, Chemphyschem : a European journal of chemical physics and physical chemistry.

Controlled enzymatic synthesis of natural-linkage, defined-length polyubiquitin chains using lysines with removable protecting groups.

R. Singh, D. Fushman, C. Castañeda, 2011, Chemical communications.

Avid interactions underlie the K63-linked polyubiquitin binding specificities observed for UBA domains

D. Fushman, Joshua J. Sims, B. Dickinson, 2009, Nature Structural &Molecular Biology.

Nonenzymatic rubylation and ubiquitination of proteins for structural and functional studies.

R. Singh, D. Fushman, A. Sundar, 2014, Angewandte Chemie.

Rpn1 and Rpn2 Coordinate Ubiquitin Processing Factors at Proteasome*

M. Glickman, D. Fushman, Daoning Zhang, 2012, The Journal of Biological Chemistry.

Exploring Polyubiquitin as a Flexible Multiple-Ligand Binding Platform.

D. Fushman, 2017, Structure.

Preparing to read the ubiquitin code: top-down analysis of unanchored ubiquitin tetramers.

C. Fenselau, D. Fushman, Yan Wang, 2016, Journal of mass spectrometry : JMS.

Supplemental Information Mixed-Linkage Ubiquitin Chains Send Mixed Messages

M. Glickman, D. Fushman, M. Nakasone, 2013 .

Top-down analysis of novel synthetic branched proteins.

C. Fenselau, D. Fushman, Betsegaw E. Lemma, 2018, Journal of mass spectrometry : JMS.

The dynamic mechanism of RASSF5 and MST kinase activation by Ras.

R. Nussinov, Chung-Jung Tsai, D. Fushman, 2017, Physical chemistry chemical physics : PCCP.

Identification of the binding site for acidic phospholipids on the pH domain of dynamin: implications for stimulation of GTPase activity.

J. Zheng, D. Cowburn, J. Schlessinger, 1996, Journal of molecular biology.

15N NMR studies provide insights into physico-chemical properties of room-temperature ionic liquids.

D. Fushman, F. Bordusa, Christoph Wiedemann, 2021, Physical chemistry chemical physics : PCCP.

The Molecular and Evolutionary Principles of Histone Folding in Eukarya and Archaea

G. Papoian, D. Fushman, C. M. Camara, 2022 .

Modifying the vicinity of the isopeptide bond to reveal differential behavior of ubiquitin chains with interacting proteins: organic chemistry applied to synthetic proteins.

A. Ciechanover, D. Fushman, A. Brik, 2013, Angewandte Chemie.

Top-Down Analysis of Branched Proteins Using Mass Spectrometry.

C. Fenselau, D. Fushman, Betsegaw E. Lemma, 2018, Analytical chemistry.

Reweighting methods for elucidation of conformation ensembles of proteins.

D. Fushman, Raquel Gama Lima Costa, 2022, Current opinion in structural biology.

Intrinsic protein disorder in oncogenic KRAS signaling

R. Nussinov, Shuai Li, Jian Zhang, 2017, Cellular and Molecular Life Sciences.

Peptide chemical ligation inside living cells: in vivo generation of a circular protein domain.

D Cowburn, T. Muir, D. Cowburn, 2001, Bioorganic & medicinal chemistry.

Rescuing a destabilized protein fold through backbone cyclization.

T. Muir, D. Raleigh, D. Cowburn, 2001, Journal of molecular biology.

The effect of noncollinearity of 15N-1H dipolar and 15N CSA tensors and rotational anisotropy on 15N relaxation, CSA/dipolar cross correlation, and TROSY

D. Cowburn, D. Fushman, 1999, Journal of biomolecular NMR.

Direct Measurement of 15N Chemical Shift Anisotropy in Solution

N. Tjandra, D. Cowburn, D. Fushman, 1998 .

Model-Independent Analysis of 15N Chemical Shift Anisotropy from NMR Relaxation Data. Ubiquitin as a Test Example

D. Cowburn, D. Fushman, 1998 .

In vivo modulation of ubiquitin chains by N-methylated non-proteinogenic cyclic peptides

A. Ciechanover, J. M. Rogers, D. Fushman, 2020, RSC chemical biology.

Evidence for bidentate substrate binding as the basis for the K48 linkage specificity of otubain 1.

Tao Wang, Cynthia Wolberger, Keith D Wilkinson, 2009, Journal of molecular biology.

Allosteric KRas4B Can Modulate SOS1 Fast and Slow Ras Activation Cycles.

R. Nussinov, D. Fushman, Tsung-Jen Liao, 2018, Biophysical journal.

RASSF5: An MST activator and tumor suppressor in vivo but opposite in vitro.

Ruth Nussinov, Hyunbum Jang, Chung-Jung Tsai, 2016, Current opinion in structural biology.

Structural basis for DNA damage-induced phosphoregulation of MDM2 RING domain

D. Fushman, K. Vousden, A. Weissman, 2020, Nature Communications.

SOS1 interacts with Grb2 through regions that induce closed nSH3 conformations.

R. Nussinov, D. Fushman, Tsung-Jen Liao, 2020, The Journal of chemical physics.

High-affinity Interactions of the nSH3/cSH3 Domains of Grb2 with the C-terminal Proline-rich Domain of SOS1.

R. Nussinov, D. Fushman, Tsung-Jen Liao, 2020, Journal of the American Chemical Society.

Graded Structural Polymorphism in a Bacterial Thermosensor Protein.

Athi N. Naganathan, D. Fushman, L. A. Campos, 2017, Journal of the American Chemical Society.

Characterization of Inter-Domain Orientations in Solution Using the NMR Relaxation Approach

D. Cowburn, D. Fushman, 2002 .

Determination of the rotational diffusion tensor of macromolecules in solution from nmr relaxation data with a combination of exact and approximate methods--application to the determination of interdomain orientation in multidomain proteins.

D. Cowburn, D. Fushman, R. Ghose, 2001, Journal of magnetic resonance.

Solution structure and dynamics of the bioactive retroviral M domain from Rous sarcoma virus.

D Cowburn, D. Cowburn, M. Resh, 1998, Journal of molecular biology.

Solution Structures of FcεRI α-Chain Mimics: A β-Hairpin Peptide and Its Retroenantiomer

David Cowburn, Brian J. Sutton, D. Cowburn, 1997 .

The main-chain dynamics of the dynamin pleckstrin homology (PH) domain in solution: analysis of 15N relaxation with monomer/dimer equilibration.

D. Cowburn, S. Cahill, D. Fushman, 1997, Journal of molecular biology.

Affinity makes the difference: nonselective interaction of the UBA domain of Ubiquilin-1 with monomeric ubiquitin and polyubiquitin chains.

D. Fushman, Daoning Zhang, S. Raasi, 2008, Journal of molecular biology.

Reversible post-translational carboxylation modulates the enzymatic activity of N-acetyl-L-ornithine transcarbamylase.

D. Shi, Xiaolin Yu, N. Allewell, 2010, Biochemistry.

Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin

K. Fidelis, L. Joachimiak, A. Joachimiak, 2021, bioRxiv.

Ubistatins Inhibit Proteasome-Dependent Degradation by Binding the Ubiquitin Chain

Mingsheng Zhang, R. Deshaies, D. Fushman, 2004, Science.

Polyubiquitin and ubiquitin-like signals share common recognition sites on proteasomal subunit Rpn1

R. Singh, D. Fushman, Daoning Zhang, 2021, The Journal of biological chemistry.

Structural and biochemical studies of the open state of Lys48-linked diubiquitin.

Ming-Yih Lai, D. Fushman, Daoning Zhang, 2012, Biochimica et biophysica acta.

Interdomain mobility in di‐ubiquitin revealed by NMR

D. Fushman, Y. Ryabov, Yaroslav Ryabov, 2006, Proteins.

Structural determinants for selective recognition of a Lys48-linked polyubiquitin chain by a UBA domain.

Michael Assfalg, D. Fushman, C. Pickart, 2005, Molecular cell.

Structural properties of polyubiquitin chains in solution.

D. Fushman, C. Pickart, O. Walker, 2002, Journal of molecular biology.

De novo macrocyclic peptides that specifically modulate Lys48-linked ubiquitin chains

A. Ciechanover, J. M. Rogers, D. Fushman, 2019, Nature Chemistry.

Extended ubiquitin species are protein-based DUB inhibitors

S. Gygi, M. Glickman, D. Fushman, 2014, Nature chemical biology.

Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor.

M. Glickman, D. Fushman, Daoning Zhang, 2009, Molecular cell.

Direct measurement of the transverse and longitudinal 15N chemical shift anisotropy–dipolar cross‐correlation rate constants using 1H‐coupled HSQC spectra

D. Fushman, Jennifer B. Hall, 2003 .

Direct measurement of the 15N CSA/dipolar relaxation interference from coupled HSQC spectra

D. Fushman, K. Dayie, Jennifer B. Hall, 2003, Journal of biomolecular NMR.

Saturation of Tunneling States in Glasses in the Presence of the Phonon Bottleneck

D. Fushman, 1985, May 1.

Kinetic Properties of the Two-Level Systems in Glasses with Account of Tunneling

D. Fushman, 1985 .

A novel recognition site for polyubiquitin and ubiquitin-like signals in an unexpected region of proteasomal subunit Rpn1

D. Fushman, O. Kleifeld, A. Boughton, 2021, The Journal of biological chemistry.

Mutations in the hydrophobic core of ubiquitin differentially affect its recognition by receptor proteins.

D. Bolon, R. Deshaies, D. Fushman, 2008, Journal of molecular biology.

Mapping the interactions between Lys48 and Lys63-linked di-ubiquitins and a ubiquitin-interacting motif of S5a.

D. Fushman, M. D'Onofrio, Aydin Haririnia, 2007, Journal of molecular biology.

Identification of primary and secondary UBA footprints on the surface of ubiquitin in cell‐mimicking crowded solution

D. Fushman, Serena Zanzoni, M. Assfalg, 2017, FEBS letters.

Tsg101/ESCRT-I recruitment regulated by the dual binding modes of K63-linked diubiquitin.

N. Tjandra, D. Fushman, C. M. Camara, 2022, Structure.

The Solution Structure and Dynamics of the Pleckstrin Homology Domain of G Protein-coupled Receptor Kinase 2 (β-Adrenergic Receptor Kinase 1)

D. Cowburn, S. Cahill, D. Fushman, 1998, The Journal of Biological Chemistry.

Solution structure of pleckstrin homology domain of dynamin by heteronuclear NMR spectroscopy.

D. Cowburn, J. Schlessinger, S. Cahill, 1995, Proceedings of the National Academy of Sciences of the United States of America.

Changing the topology of protein backbone: the effect of backbone cyclization on the structure and dynamics of a SH3 domain

Jennifer H. Grossman, D. Fushman, F. Schumann, 2015, Front. Chem..

Deriving quantitative dynamics information for proteins and RNAs using ROTDIF with a graphical user interface

Konstantin Berlin, D. Fushman, T. K. Dayie, 2013, Journal of Biomolecular NMR.

Determining protein dynamics from ¹⁵N relaxation data by using DYNAMICS.

D. Fushman, 2012, Methods in molecular biology.

Determination of Protein Dynamics Using 15N Relaxation Measurements

D. Fushman, 2008 .

Measurement of 15N relaxation in deuterated amide groups in proteins using direct nitrogen detection

D. Fushman, P. Vasos, R. Kümmerle, 2006, Journal of biomolecular NMR.

Analysis of interdomain dynamics in a two‐domain protein using residual dipolar couplings together with 15N relaxation data

D. Fushman, Y. Ryabov, 2006, Magnetic resonance in chemistry : MRC.

Determining domain orientation in macromolecules by using spin-relaxation and residual dipolar coupling measurements

D. Fushman, M. Assfalg, O. Walker, 2004 .

A comparative study of the backbone dynamics of two closely related lipid binding proteins: Bovine heart fatty acid binding protein and porcine ileal lipid binding protein

C. Ludwig, J. Sacchettini, D. Fushman, 2004, Molecular and Cellular Biochemistry.

Characterization of the overall rotational diffusion of a protein from 15N relaxation measurements and hydrodynamic calculations.

D. Fushman, Jennifer Blake-Hall, O. Walker, 2004, Methods in molecular biology.

Characterization of the overall and local dynamics of a protein with intermediate rotational anisotropy: Differentiating between conformational exchange and anisotropic diffusion in the B3 domain of protein G

D. Fushman, Jennifer B. Hall, 2003, Journal of biomolecular NMR.

Nuclear magnetic resonance relaxation in determination of residue-specific 15N chemical shift tensors in proteins in solution: protein dynamics, structure, and applications of transverse relaxation optimized spectroscopy.

D. Cowburn, D. Fushman, 2001, Methods in enzymology.

A comparative study of the backbone dynamics of two closely related lipid binding proteins: bovine heart fatty acid binding protein and porcine ileal lipid binding protein.

C. Ludwig, J. Sacchettini, D. Fushman, 1999 .

Backbone dynamics of ribonuclease T1 and its complex with 2′GMP studied by two-dimensional heteronuclear NMR spectroscopy

D. Fushman, H. Rüterjans, R. Weisemann, 1994, Journal of biomolecular NMR.

Impact of different ionization states of phosphorylated Serine-65 on ubiquitin structure and interactions

R. Singh, D. Fushman, Y. Kazansky, 2018, Scientific Reports.

Surface fractality of proteins from theory and NMR data.

D. Fushman, 1990, Journal of biomolecular structure & dynamics.

Efficient and accurate determination of the overall rotational diffusion tensor of a molecule from (15)N relaxation data using computer program ROTDIF.

D. Fushman, O. Walker, Olivier Walker, 2004, Journal of magnetic resonance.

Alanine scan of core positions in ubiquitin reveals links between dynamics, stability, and function.

D. Bolon, D. Fushman, C. Castañeda, 2014, Journal of molecular biology.

Evidence for Cooperative and Domain-specific Binding of the Signal Transducing Adaptor Molecule 2 (STAM2) to Lys63-linked Diubiquitin*

D. Fushman, Daniela Hoeller, O. Walker, 2012, The Journal of Biological Chemistry.

Density functional calculations of 15N chemical shifts in solvated dipeptides

D. Fushman, D. Kosov, Ling Cai, 2008, Journal of biomolecular NMR.

Impact of Cl− and Na+ ions on simulated structure and dynamics of βARK1 PH domain

D. Cowburn, D. Fushman, S. Pfeiffer, 1999, Proteins.

Characterizing polyubiquitinated forms of the neurodegenerative ubiquitin mutant UBB+1

D. Fushman, M. Nakasone, Daoning Zhang, 2016, FEBS letters.

Mixed-linkage ubiquitin chains send mixed messages.

M. Glickman, D. Fushman, M. Nakasone, 2013, Structure.

Branched ubiquitin chain binding and deubiquitination by UCH37 facilitate proteasome clearance of stress-induced inclusions

Lan Huang, C. Hill, D. Fushman, 2021, bioRxiv.

Crosstalk between Lys63- and Lys11-polyubiquitin signaling at DNA damage sites is driven by Cezanne

Xiaodong Cheng, D. Fushman, Xiao Wu, 2019, Genes & development.

Base-CP proteasome can serve as a platform for stepwise lid formation

M. Glickman, D. Fushman, N. Reis, 2015, Bioscience reports.

Disassembly of Lys11 and Mixed Linkage Polyubiquitin Conjugates Provides Insights into Function of Proteasomal Deubiquitinases Rpn11 and Ubp6*

M. Glickman, D. Fushman, N. Reis, 2014, The Journal of Biological Chemistry.

Disassembly of Lys 11-and mixed-linkage polyubiquitin conjugates provide insights into function of proteasomal deubiquitinases Rpn 11 and Ubp

M. Glickman, D. Fushman, M. Delbrück, 2014 .

deubiquitinases Rpn11 and Ubp6 into function of proteasomal polyubiquitin conjugates provide insights Disassembly of Lys11- and mixed-linkage Protein Synthesis and Degradation:

D. Fushman, N. Reis, M. Nakasone, 2014 .

Nonenzymatic assembly of branched polyubiquitin chains for structural and biochemical studies.

D. Fushman, C. Castañeda, Yan Wang, 2013, Bioorganic & medicinal chemistry.

Structure and recognition of polyubiquitin chains of different lengths and linkage

D. Fushman, K. Wilkinson, David Fushman, 2011, F1000 biology reports.

A model of interdomain mobility in a multidomain protein.

D. Fushman, Y. Ryabov, David Fushman, 2007, Journal of the American Chemical Society.

Using NMR spectroscopy to monitor ubiquitin chain conformation and interactions with ubiquitin-binding domains.

D. Fushman, M. Assfalg, Ranjani Varadan, 2005, Methods in enzymology.

Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins.

D. Fushman, M. Nakasone, O. Walker, 2016, Structure.

Structural assembly of molecular complexes based on residual dipolar couplings.

Konstantin Berlin, Dianne P O'Leary, D. O’Leary, 2010, Journal of the American Chemical Society.

Atom-by-atom analysis of global downhill protein folding

Victor Muñoz, V. Muñoz, D. Fushman, 2006, Nature.

Ubiquitin is a carbon dioxide–binding protein

D. Fushman, G. Lorimer, Philip D. Townsend, 2021, Science advances.

Quantum computation of molecular structure using data from challenging-to-classically-simulate nuclear magnetic resonance experiments.

H. Neven, R. Babbush, V. Smelyanskiy, 2021, PRX quantum : a Physical Review journal.

Crystal structure and solution NMR studies of Lys48-linked tetraubiquitin at neutral pH.

Cynthia Wolberger, D. Fushman, C. Pickart, 2007, Journal of molecular biology.

Quantum computation of molecular structure using data from challenging-to-classically-simulate nuclear magnetic resonance experiments.

H. Neven, R. Babbush, V. Smelyanskiy, 2021, PRX quantum : a Physical Review journal.

Probing the Binding Modes of a Multidomain Protein to Lipid-based Nanoparticles by Relaxation-based NMR.

G. Clore, V. Tugarinov, D. Fushman, 2017, The journal of physical chemistry letters.

The virtual NMR spectrometer: a computer program for efficient simulation of NMR experiments involving pulsed field gradients.

D Cowburn, D. Cowburn, D. Fushman, 2000, Journal of magnetic resonance.

DNA-damage-inducible 1 protein (Ddi1) contains an uncharacteristic ubiquitin-like domain that binds ubiquitin.

M. Glickman, D. Fushman, N. Reis, 2015, Structure.

Recognition and Cleavage of Related to Ubiquitin 1 (Rub1) and Rub1-Ubiquitin Chains by Components of the Ubiquitin-Proteasome System*

R. Singh, M. Scheffner, M. Glickman, 2012, Molecular & Cellular Proteomics.

Nonenzymatic assembly of natural polyubiquitin chains of any linkage composition and isotopic labeling scheme.

D. Fushman, C. Castañeda, U. Nowicka, 2011, Journal of the American Chemical Society.

Segmental isotopic labeling of ubiquitin chains to unravel monomer-specific molecular behavior.

D. Fushman, A. Brik, C. Castañeda, 2011, Angewandte Chemie.

Density functional calculations of backbone 15N shielding tensors in beta-sheet and turn residues of protein G

D. Fushman, D. Kosov, Ling Cai, 2011, Journal of biomolecular NMR.

Conformational Tuning Shapes the Balance between Functional Promiscuity and Specialization in Paralogous Plasmodium Acyl-CoA Binding Proteins

Athi N. Naganathan, D. Fushman, Westley Pawloski, 2023, bioRxiv.

The mechanism of catalysis by L-asparaginase.

J. Weinstein, A. Wlodawer, D. Fushman, 2020, Biochemistry.

Performance of a GPU-based Direct Summation Algorithm for Computation of Small Angle Scattering Profile pdf

Ramani Duraiswami, Nail A. Gumerov, Konstantin Berlin, 2013, ArXiv.

A hierarchical algorithm for fast debye summation with applications to small angle scattering

Ramani Duraiswami, Nail A. Gumerov, Konstantin Berlin, 2012, J. Comput. Chem..

Information content of long-range NMR data for the characterization of conformational heterogeneity

Konstantin Berlin, C. Luchinat, D. Fushman, 2015, Journal of biomolecular NMR.

Information content of long-range NMR data for the characterization of conformational heterogeneity

Konstantin Berlin, C. Luchinat, D. Fushman, 2015, Journal of Biomolecular NMR.

Structure of the s5a:k48-linked diubiquitin complex and its interactions with rpn13.

Aydin Haririnia, James L Cole, D. Fushman, 2009, Molecular cell.

Perturbing the Ubiquitin Pathway Reveals How Mitosis Is Hijacked to Denucleate and Regulate Cell Proliferation and Differentiation In Vivo

J. Kuszak, A. Cvekl, D. Fushman, 2010, PloS one.

The Symmetry and Asymmetry Behind Histone Folding Across Eukarya and Archaea

G. Papoian, D. Fushman, C. M. Camara, 2023, bioRxiv.

Direct determination of changes of interdomain orientation on ligation: use of the orientational dependence of 15N NMR relaxation in Abl SH(32).

D. Cowburn, D. Fushman, R. Xu, 1999, Biochemistry.

Dual domain recognition determines SARS-CoV-2 PLpro selectivity for human ISG15 and K48-linked di-ubiquitin

K. Fidelis, L. Joachimiak, A. Joachimiak, 2023, Nature communications.

Autoinhibition in Ras effectors Raf, PI3Kα, and RASSF5: a comprehensive review underscoring the challenges in pharmacological intervention

R. Nussinov, Chung-Jung Tsai, D. Fushman, 2018, Biophysical Reviews.

Density functional calculations of chemical shielding of backbone 15N in helical residues of protein G

D. Fushman, D. Kosov, Ling Cai, 2009, Journal of biomolecular NMR.

Ubiquitin Chains Bearing Genetically Encoded Photo-Cross-Linkers Enable Efficient Covalent Capture of (Poly)ubiquitin-Binding Domains.

D. Fushman, T. Cropp, Westley Pawloski, 2019, Biochemistry.

An efficient computational method for predicting rotational diffusion tensors of globular proteins using an ellipsoid representation.

D. Fushman, Y. Ryabov, C. Geraghty, 2006, Journal of the American Chemical Society.

Impact of different ionization states of phosphorylated Serine-65 on ubiquitin structure and interactions

R. Singh, D. Fushman, Y. Kazansky, 2018, Scientific Reports.

Hydrophobic Patch of Ubiquitin is Important for its Optimal Activation by Ubiquitin Activating Enzyme E1.

D. Fushman, Y. Kazansky, Rajesh K. Singh, 2017, Analytical chemistry.

Effects of cyclization on conformational dynamics and binding properties of Lys48‐linked di‐ubiquitin

D. Fushman, B. Dickinson, R. Varadan, 2007, Protein science : a publication of the Protein Society.

RASSF5: An MST activator and tumor suppressor in vivo but opposite in vitro.

R. Nussinov, Chung-Jung Tsai, D. Fushman, 2016, Current opinion in structural biology.

Nonenzymatic rubylation and ubiquitination of proteins for structural and functional studies.

R. Singh, D. Fushman, A. Sundar, 2014, Angewandte Chemie.

Together, Rpn10 and Dsk2 can serve as a polyubiquitin chain-length sensor.

M. Glickman, D. Fushman, Daoning Zhang, 2009, Molecular cell.

Exploring the linkage dependence of polyubiquitin conformations using molecular modeling.

D. Fushman, O. Walker, 2010, Journal of molecular biology.

Density functional calculations of backbone 15N shielding tensors in beta-sheet and turn residues of protein G

D. Fushman, D. Kosov, Ling Cai, 2011, Journal of biomolecular NMR.

Linkage via K27 Bestows Ubiquitin Chains with Unique Properties among Polyubiquitins.

D. Fushman, M. Nakasone, O. Walker, 2016, Structure.

Mechanism of selective recognition of Lys48-linked polyubiquitin by macrocyclic peptide inhibitors of proteasomal degradation

D. Fushman, A. Brik, Ganga B. Vamisetti, 2023, Nature communications.

Deriving quantitative dynamics information for proteins and RNAs using ROTDIF with a graphical user interface

Konstantin Berlin, D. Fushman, Andrew P. Longhini, 2013, Journal of Biomolecular NMR.

DNA-Damage-Inducible 1 Protein ( Ddi 1 ) Contains an Uncharacteristic Ubiquitin-like Domain that Binds Ubiquitin Highlights

M. Glickman, D. Fushman, O. Walker, 2015 .

An Approach to Direct Determination of Protein Dynamics from 15N NMR Relaxation at Multiple Fields, Independent of Variable 15N Chemical Shift Anisotropy and Chemical Exchange Contributions

N. Tjandra, D. Cowburn, D. Fushman, 1999 .

1H, 13C, and 15N resonance assignment of the ubiquitin-like domain from Dsk2p

M. Glickman, D. Fushman, Daoning Zhang, 2008, Biomolecular NMR assignments.