C. Araya

发表

A fundamental protein property, thermodynamic stability, revealed solely from large-scale measurements of protein function

S. Fields, D. Fowler, C. Araya, 2012, Proceedings of the National Academy of Sciences.

High Resolution Mapping of Protein Sequence–Function Relationships

D. Baker, S. Fields, S. Fleishman, 2010, Nature Methods.

Genome-scale measurement of off-target activity using Cas9 toxicity in high-throughput screens

Gaelen T. Hess, A. Kundaje, M. Snyder, 2017, Nature Communications.

Regulatory analysis of the C. elegans genome with spatiotemporal resolution

Daniel L. Mace, Dan Xie, A. Kundaje, 2014, Nature.

Deep mutational scanning: assessing protein function on a massive scale.

D. Fowler, C. Araya, 2011, Trends in biotechnology.

Identification of significantly mutated regions across cancer types highlights a rich landscape of functional molecular alterations

Michael P Snyder, Vijay S Pande, Can Cenik, 2015, Nature Genetics.

Integrative analysis of RNA, translation and protein levels reveals distinct regulatory variation across humans

Hagen U. Tilgner, Fabian Grubert, Hua Tang, 2015, bioRxiv.

Quantitative analysis of RNA-protein interactions on a massively parallel array for mapping biophysical and evolutionary landscapes

Howard Y. Chang, William J. Greenleaf, Michael P. Snyder, 2014, Nature Biotechnology.

Comparative analysis of regulatory information and circuits across distant species

Peter J. Bickel, Mark Gerstein, Philip Cayting, 2014, Nature.

Sushi.R: flexible, quantitative and integrative genomic visualizations for publication-quality multi-panel figures

Michael P. Snyder, Alan P. Boyle, Douglas H. Phanstiel, 2014, Bioinform..

Whole-genome sequencing of a laboratory-evolved yeast strain

Stanley Fields, Maitreya J. Dunham, Maitreya J Dunham, 2010, BMC genomics.

Systematic identification of significantly mutated regions reveals a rich landscape of functional molecular alterations across cancer genomes

V. Pande, M. Snyder, G. Kiss, 2015, bioRxiv.

Enrich: software for analysis of protein function by enrichment and depletion of variants

Douglas M. Fowler, Wayne Gerard, Carlos L. Araya, 2011, Bioinform..

Integrative analysis of RNA, translation, and protein levels reveals distinct regulatory variation across humans

Michael P Snyder, Bilal Alsallakh, Can Cenik, 2015, Genome research.

Genome-Wide Analysis of Nascent Transcription in Saccharomyces cerevisiae

S. Fields, C. Araya, Anastasia McKinlay, 2011, G3: Genes | Genomes | Genetics.

AceTree: a tool for visual analysis of Caenorhabditis elegans embryogenesis

Zhirong Bao, Carlos L. Araya, Thomas J. Boyle, 2006, BMC Bioinformatics.

Science Magazine

D. Fowler, C. Araya, B. Livesey, 2014 .

Prioritizing genes for systematic variant effect mapping

Frederick P. Roth, Keith Nykamp, Jochen Weile, 2020, Bioinform..

Genome-scale measurement of off-target activity using Cas9 toxicity in high-throughput screens

Gaelen T. Hess, A. Kundaje, W. Greenleaf, 2017, Nature Communications.

Nature Genetics Advance Online Publication a N a Ly S I S Identification of Significantly Mutated Regions across Cancer Types Highlights a Rich Landscape of Functional Molecular Alterations

V. Pande, M. Snyder, G. Kiss, 2022 .

Whole-genome sequencing of a laboratory-evolved yeast strain

Maitreya J. Dunham, S. Fields, C. Araya, 2010, BMC Genomics.