Y. Lebedev

发表

Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection

T. Mora, A. Walczak, D. Chudakov, 2021, eLife.

Quantitative tracking of T cell clones after haematopoietic stem cell transplantation

Dmitriy A Bolotin, Ilgar Z Mamedov, Dmitriy M Chudakov, 2011, EMBO molecular medicine.

Preparing Unbiased T-Cell Receptor and Antibody cDNA Libraries for the Deep Next Generation Sequencing Profiling

Olga V. Britanova, Dmitriy M. Chudakov, Ekaterina V. Putintseva, 2013, Front. Immunol..

Distinctive properties of identical twins' TCR repertoires revealed by high-throughput sequencing

Mikhail Shugay, Dmitriy M. Chudakov, Mikhail V. Pogorelyy, 2014, Proceedings of the National Academy of Sciences.

Detecting T cell receptors involved in immune responses from single repertoire snapshots

Thierry Mora, Mikhail Shugay, Aleksandra M Walczak, 2018, bioRxiv.

Physical mapping of sequences homologous to an endogenous retrovirus LTR on human chromosome 19

S. Volik, G. Lennon, L. Ashworth, 1995, Molecular and General Genetics MGG.

Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones

T. Mora, A. Walczak, D. Chudakov, 2020, eLife.

Precise tracking of vaccine-responding T-cell clones reveals convergent and personalized response in identical twins

T. Mora, A. Walczak, D. Chudakov, 2018, bioRxiv.

The use of non-functional clonotypes as a natural spike-in for multiplex PCR bias 1 correction in immune receptor repertoire profiling 2 3

D. Chudakov, I. Mamedov, Y. Lebedev, 2021 .

Corrigendum to: Identification of Disease-associated Traits and Clonotypes in the T Cell Receptor Repertoire of Monozygotic Twins Affected by Inflammatory Bowel Diseases

M. Spehlmann, A. Franke, V. Andersen, 2020, Journal of Crohn's & colitis.

A tissue-specific decrease in the pre-mRNA level of L1-and Alu-containing alleles of human genes

Y. Lebedev, E. Sverdlov, S. Ustyugova, 2006, Russian Journal of Bioorganic Chemistry.

Inactivated tick-borne encephalitis vaccine elicits several overlapping waves of T cell response

Anastasiia L. Sycheva, A. Minervina, E. Komech, 2022, Frontiers in Immunology.

Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection

Meriem Bensouda Koraichi, T. Mora, A. Walczak, 2020, bioRxiv.

Genomic normalization for sequencing libraries enrichment for rare somatic retroelement insertions

A. Minervina, I. Mamedov, Y. Lebedev, 2018, bioRxiv.

This information is current as Using Unique Molecular Identifiers Repertoires for Minor Lymphocyte Counts Quantitative Profiling of Immune

Evgeny S. Egorov, A. N. Davydov, O. Britanova, 2015 .

Genetic Structure of the Volga–Ural and Central Asian Populations Inferred from the Data on Alu Polymorphism

R. Khusainova, E. Khusnutdinova, Y. Lebedev, 2004, Russian Journal of Genetics.

Enhancer Activity of Solitary Long Terminal Repeat of Human Endogenous Retrovirus K

Y. Lebedev, S. Akopov, E. Sverdlov, 2002, Russian Journal of Bioorganic Chemistry.

A novel approach to identification of somatic retroelements’ insertions in human genome

I. Mamedov, Y. Lebedev, M. Pogorelyy, 2013, Russian Journal of Bioorganic Chemistry.

The use of non-functional clonotypes as a natural calibrator for quantitative bias correction in adaptive immune receptor repertoire profiling

D. Chudakov, I. Mamedov, Y. Lebedev, 2022, bioRxiv.

Olga V. Britanova, Mikhail Shugay, Dmitriy M. Chudakov, 2014, The Journal of Immunology.

Proceedings of the Frontiers of Retrovirology Conference 2016

R. König, D. Elleder, R. Sachidanandam, 2016, Retrovirology.

Long L1 insertions in human gene introns specifically reduce the content of corresponding primary transcripts

Y. Lebedev, E. Sverdlov, S. Ustyugova, 2006, Genetica.

The Tissue-Specific Methylation of Human-Specific Endogenous Retroviral LTRs

Y. Lebedev, E. Sverdlov, K. Khodosevich, 2004, Russian Journal of Bioorganic Chemistry.

The Evidence for Increased L1 Activity in the Site of Human Adult Brain Neurogenesis

A. Minervina, I. Mamedov, Y. Lebedev, 2015, PloS one.

Endogenous Retroviruses and Human Evolution

Y. Lebedev, E. Sverdlov, K. Khodosevich, 2002, Comparative and functional genomics.

Human Trash ESTs - Sequences from cDNA Collection that are not Aligned to genome Assembly

Sergey A Lukyanov, Alexander Y Panchin, Sergey A Spirin, 2008, J. Bioinform. Comput. Biol..

Detecting T-cell receptors involved in immune responses from single repertoire snapshots

Thierry Mora, Aleksandra M. Walczak, Mikhail Shugay, 2018, bioRxiv.

tcR: an R package for T cell receptor repertoire advanced data analysis

E. Komech, I. Mamedov, Y. Lebedev, 2015, BMC Bioinformatics.

Genome-wide targeted search for human specific and polymorphic L1 integrations

A. Buzdin, Y. Lebedev, E. Sverdlov, 2003, Human Genetics.

Contribution of functional KIR3DL1 to ankylosing spondylitis

O. Britanova, S. Lukyanov, D. Chudakov, 2010, Cellular and Molecular Immunology.

Retroposons in modern human genome evolution

I. Mamedov, Y. Lebedev, S. Ustyugova, 2009, Russian Journal of Bioorganic Chemistry.

Solitary HERV‐K LTRs possess bi‐directional promoter activity and contain a negative regulatory element in the U5 region

Y. Lebedev, E. Kopantzev, E. Snezhkov, 2000, FEBS letters.

Nucleotide Sequences of Long Terminal Repeats of the Human Endogenous Retroviruses (LTR HERV-K) on the Short Arm of Chromosome 7: Identification, Map Locations, and Transcriptional Activity

Y. Lebedev, E. Nadezhdin, E. D. Sverdlov, 2003, Russian Journal of Genetics.

Differences in HERV-K LTR insertions in orthologous loci of humans and great apes.

Y. Lebedev, E. Sverdlov, S. Kurdyukov, 2000, Gene.

Whole-genome experimental identification of insertion/deletion polymorphisms of interspersed repeats by a new general approach

I. Mamedov, Y. Lebedev, E. Sverdlov, 2005, Nucleic acids research.

Cell line fingerprinting using retroelement insertion polymorphism.

Y. Lebedev, E. Sverdlov, S. Ustyugova, 2005, BioTechniques.

Genome-wide comparison of differences in the integration sites of interspersed repeats between closely related genomes.

A. Buzdin, I. Mamedov, Y. Lebedev, 2002, Nucleic acids research.

A technique for genome-wide identification of differences in the interspersed repeats integrations between closely related genomes and its application to detection of human-specific integrations of HERV-K LTRs.

A. Buzdin, I. Mamedov, Y. Lebedev, 2002, Genomics.

The Absence of Retroelement Activity Is Characteristic for Childhood Acute Leukemias and Adult Acute Lymphoblastic Leukemia

E. Komech, I. Mamedov, Y. Lebedev, 2022, International journal of molecular sciences.

Quantitative Profiling of Immune Repertoires for Minor Lymphocyte Counts Using Unique Molecular Identifiers

Mikhail Shugay, Dmitriy A Bolotin, Dmitriy M Chudakov, 2015, The Journal of Immunology.

Comprehensive analysis of antiviral adaptive immunity formation and reactivation down to single-cell level

T. Mora, A. Walczak, D. Chudakov, 2019, bioRxiv.

Full-sized HERV-K (HML-2) human endogenous retroviral LTR sequences on human chromosome 21: map locations and evolutionary history.

I. Mamedov, Y. Lebedev, K. Gardiner, 2001, Gene.

Digital expression profiles of human endogenous retroviral families in normal and cancerous tissues.

C. V. Jongeneel, Peter Sperisen, Y. Lebedev, 2004, Cancer immunity.

SeqURE – a new copy-capture based method for sequencing of unknown Retroposition events

E. Komech, I. Mamedov, Y. Lebedev, 2020, Mobile DNA.

A new family of chimeric retrotranscripts formed by a full copy of U6 small nuclear RNA fused to the 3' terminus of l1.

A. Buzdin, Y. Lebedev, E. Sverdlov, 2002, Genomics.

A Pipeline for the Error-Free Identification of Somatic Alu Insertions in High-Throughput Sequencing Data

A. Minervina, I. Mamedov, Y. Lebedev, 2019, Molecular Biology.

High‐throughput sequencing of T‐cell receptor alpha chain clonal rearrangements at the DNA level in lymphoid malignancies

D. Chudakov, I. Mamedov, Y. Lebedev, 2020, British journal of haematology.

An advanced enrichment method for rare somatic retroelement insertions sequencing

A. Minervina, I. Mamedov, Y. Lebedev, 2018, Mobile DNA.

Quantitative profiling reveals minor changes of T cell receptor repertoire in response to subunit inactivated influenza vaccine.

Ilgar Z Mamedov, Dmitriy M Chudakov, Anastasiia L. Sycheva, 2018, Vaccine.

High polymorphism level of genomic sequences flanking insertion sites of human endogenous retroviral long terminal repeats

I. Gottesman, N. Broude, Y. Lebedev, 1999, FEBS letters.

Endogenous retroviruses: A possible role in human cell function

Y. Lebedev, 2000, Molecular Biology.

CD8+ T cells with characteristic T cell receptor beta motif are detected in blood and expanded in synovial fluid of ankylosing spondylitis patients

Mikhail Shugay, Ilgar Z Mamedov, Dmitriy M Chudakov, 2018, Rheumatology.

Mother and Child T Cell Receptor Repertoires: Deep Profiling Study

Olga V. Britanova, Mikhail Shugay, Dmitriy M. Chudakov, 2013, Front. Immunol..

Normalized Sequence Profiling Diversity Measured with Deep and Age-Related Decrease in TCR Repertoire

M. Merzlyak, S. Lukyanov, D. Chudakov, 2014 .

Identification and localization of differences between Escherichia coli and Salmonella typhimurium genomes by suppressive subtractive hybridization

S. Lukyanov, G. Andersen, Y. Lebedev, 1999, Molecular and General Genetics MGG.

Human-specific subfamilies of HERV-K (HML-2) long terminal repeats: three master genes were active simultaneously during branching of hominoid lineages.

Konstantin Khodosevich, Anton Buzdin, A. Buzdin, 2003, Genomics.

Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins

Thierry Mora, Aleksandra M. Walczak, Dmitriy M. Chudakov, 2018, Proceedings of the National Academy of Sciences.

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

Yuval Elhanati, Quentin Marcou, Thierry Mora, 2016, bioRxiv.

Large-scale determination of the methylation status of retrotransposons in different tissues using a methylation tags approach.

Y. Lebedev, E. Sverdlov, K. Khodosevich, 2004, Nucleic acids research.

Identification of Disease-associated Traits and Clonotypes in the T Cell Receptor Repertoire of Monozygotic Twins Affected by Inflammatory Bowel Diseases

M. Spehlmann, A. Franke, V. Andersen, 2019, Journal of Crohn's & colitis.

Functional analysis of polymorphic insertions of Alu retroelements in acute lymphoblastic leukemia patients

Y. Lebedev, V. Shvets, M. Maschan, 2012, Russian Journal of Bioorganic Chemistry.

Fine mapping of a polymorphic CA repeat marker on human chromosome 19 and its use in population studies.

L. Ashworth, O. Balanovsky, Y. Lebedev, 1999, Gene.

High resolution mapping DNAs by R-loop atomic force microscopy.

Y. Lebedev, D. Cherny, D. Klinov, 1998, Nucleic acids research.

Non-canonical D1-D2 recombination produces two types of rearrangements and represents a conservative hidden stage of T-cell receptor beta chain generation

D. Chudakov, I. Mamedov, Y. Lebedev, 2023, bioRxiv.

Non-canonical D1-D2 rearrangements are bimodal and represent a conservative hidden stage of VDJ recombination in TCR beta locus

D. Chudakov, I. Mamedov, Y. Lebedev, 2023 .

Method for identification of condition-associated public antigen receptor sequences

Thierry Mora, Aleksandra M Walczak, Ilgar Z Mamedov, 2017, bioRxiv.

An advanced enrichment method for rare somatic retroelement insertions sequencing

A. Minervina, I. Mamedov, Y. Lebedev, 2018, Mobile DNA.

Most recent AluY insertions in human gene introns reduce the content of the primary transcripts in a cell type specific manner.

I. Mamedov, Y. Lebedev, E. Sverdlov, 2007, Gene.

Proceedings of the Frontiers of Retrovirology Conference 2016

Sebastian A. Wagner, R. König, D. Elleder, 2016, Retrovirology.

Long terminal repeats of human endogenous retrovirus K family (HERV‐K) specifically bind host cell nuclear proteins

Y. Lebedev, P. Khil, Sergey B Akopov, 1998, FEBS letters.

Advanced lymphoblastic clones detection in T-cell leukemia

A. Minervina, I. Mamedov, Y. Lebedev, 2016, Doklady Biochemistry and Biophysics.

Unusually long target site duplications flanking some of the long terminal repeats of human endogenous retrovirus K in the human genome.

I. Mamedov, Y. Lebedev, E. Sverdlov, 2004, The Journal of general virology.

Human-Specific HERV-K Intron LTRs Have Nonaccidental Opposite Orientation Relative to the Direction of Gene Transcription and Might Be Involved in the Antisense Regulation of Gene Expression

A. Buzdin, Y. Lebedev, E. Sverdlov, 2004, Russian Journal of Bioorganic Chemistry.

A rare event of insertion polymorphism of a HERV-K LTR in the human genome.

E. Khusnutdinova, I. Mamedov, Y. Lebedev, 2004, Genomics.

A Pipeline for the Error-Free Identification of Somatic Alu Insertions in High-Throughput Sequencing Data

A. Minervina, Y. Lebedev, M. V. Saliutina, 2019, Molecular Biology.

tcR: an R package for T cell receptor repertoire advanced data analysis

Mikhail Pogorelyy, Dmitry Chudakov, Mikhail Shugay, 2015, BMC Bioinformatics.

Subfamilies and nearest-neighbour dendrogram for the LTRs of human endogenous retroviruses HERV-K mapped on human chromosome 19: physical neighbourhood does not correlate with identity level

A. Lapuk, Y. Lebedev, E. Sverdlov, 1998, Human Genetics.