Yong Hou

发表

PIRD: Pan immune repertoire database

Huanming Yang, Jian Wang, L. Fang, 2018, bioRxiv.

Single-Cell Exome Sequencing and Monoclonal Evolution of a JAK2-Negative Myeloproliferative Neoplasm

Huanming Yang, Jian Wang, K. Kristiansen, 2012, Cell.

Single-Cell Exome Sequencing Reveals Single-Nucleotide Mutation Characteristics of a Kidney Tumor

Huanming Yang, Jian Wang, K. Kristiansen, 2012, Cell.

Discovery of biclonal origin and a novel oncogene SLC12A5 in colon cancer by single-cell sequencing

Jian Wang, Renhua Wu, Xun Xu, 2014, Cell Research.

Over 50,000 Metagenomically Assembled Draft Genomes for the Human Oral Microbiome Reveal New Taxa

Huijue Jia, Zhuye Jie, Liang Xiao, 2019, bioRxiv.

M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

Huijue Jia, Zhuye Jie, Liang Xiao, 2019, bioRxiv.

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

Deacon J. Sweeney, Jun Wang, Shuang Yang, 2012, Nature Biotechnology.

Pan-cancer analysis of whole genomes

Steven J. M. Jones, Nuno A. Fonseca, Icgc, 2020, Nature.

1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

Qiang Feng, Suisha Liang, Huijue Jia, 2019, Nature Biotechnology.

Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells

Huanming Yang, Jian Wang, K. Kristiansen, 2015, GigaScience.

Current Challenges in the Bioinformatics of Single Cell Genomics

Yong Hou, Jiankui He, Guibo Li, 2013, Front. Oncol..

Genetic landscape of hepatitis B virus-associated diffuse large B-cell lymphoma.

Kui Wu, Wei Li, Yixin Zeng, 2018, Blood.

Comparative analysis of sequencing technologies for single-cell transcriptomics

S. Teichmann, Bo Li, Zhichao Miao, 2019, Genome Biology.

PSSMHCpan: a novel PSSM-based software for predicting class I peptide-HLA binding affinity

Jian Wang, Yong Hou, Huanming Yang, 2017, GigaScience.

Genomic basis for RNA alterations revealed by whole-genome analyses of 27 cancer types

Gunnar Rätsch, Junjun Zhang, Nuno A. Fonseca, 2017 .

The novel llama-human chimeric antibody has potent effect in lowering LDL-c levels in hPCSK9 transgenic rats

Bo Li, Xiuqing Zhang, Yong Hou, 2020, Clinical and Translational Medicine.

Genome diversity in Ukraine

Ryan E. Mills, Alexandra M. Weber, Huanming Yang, 2020, bioRxiv.

A multi-omic cohort as a reference point for promoting a healthy human gut microbiome

Suisha Liang, Huijue Jia, Zhuye Jie, 2019 .

Gene Panel Sequencing in a Chinese High-risk Breast Cancer Cohort

Huanming Yang, Jian Wang, K. Shao, 2019, bioRxiv.

Single-cell transcriptomic landscape of nucleated cells in umbilical cord blood

Wei Zhang, Huanming Yang, Jian Wang, 2018, bioRxiv.

Sex differences in genetic associations with longevity in Han Chinese-- Sex-stratified GWAS and polygenic risk score analyses

A. Yashin, Huanming Yang, J. Vaupel, 2017 .

Mutational bias of Turnip Yellow Mosaic Virus in the context of host anti-viral gene silencing.

Hui Jiang, Jinmin Ma, Yong Hou, 2015, Virology.

High-throughput Single-cell CNV Detection Reveals Clonal Evolution During Hepatocellular Carcinoma Recurrence

Yong Hou, Shiping Liu, M. Dean, 2020, bioRxiv.

Single-cell transcriptomics reveals regulators underlying immune cell diversity and immune subtypes associated with prognosis in nasopharyngeal carcinoma

I. Amit, Yingqin Li, Y. Mao, 2020, Cell Research.

Genomic signatures of near-extinction and rebirth of the crested ibis and other endangered bird species

Huanming Yang, Jian Wang, Jun Wang, 2014, Genome Biology.

Novel variants in MLL confer to bladder cancer recurrence identified by whole-exome sequencing

Z. Cai, Yi Huang, Xiaojuan Sun, 2015, Oncotarget.

Pan-cancer study of heterogeneous RNA aberrations

Nuno A. Fonseca, Angela N. Brooks, Stefan G. Stark, 2017, bioRxiv.

Inter-determination of blood metabolite levels and gut microbiome supported by Mendelian randomization

Huijue Jia, Zhuye Jie, Liang Xiao, 2020 .

Progress and challenges of sequencing and analyzing circulating tumor cells

K. Shao, Yong Hou, S. Qiu, 2017, Cell Biology and Toxicology.

Integrated bioinformatics analysis to identify 15 hub genes in breast cancer

Huanming Yang, Jian Wang, K. Shao, 2019, Oncology letters.

An epigenetic biomarker combination of PCDH17 and POU4F2 detects bladder cancer accurately by methylation analyses of urine sediment DNA in Han Chinese

Z. Cai, F. Zhou, Rui Ye, 2015, Oncotarget.

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

Huijue Jia, Junhua Li, Huanming Yang, 2019, bioRxiv.

Distinct gut metagenomics and metaproteomics signatures in prediabetics and treatment-naïve type 2 diabetics

Huijue Jia, Junhua Li, Huanming Yang, 2019, bioRxiv.

Age-dependent sexual dimorphism in the adult human gut microbiota

Junhua Li, Huanming Yang, Jian Wang, 2019, bioRxiv.

Life History Recorded in the Vagino-cervical Microbiome Along with Multi-omes

Huijue Jia, Zhuye Jie, Huanming Yang, 2019, bioRxiv.

M-GWAS for the gut microbiome in Chinese adults illuminates on complex diseases

Huijue Jia, Zhuye Jie, Huanming Yang, 2019, bioRxiv.

Syddansk Universitet The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells

R. L. Nielsen, Huanming Yang, J. Stenvang, 2016 .

The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells

R. L. Nielsen, Huanming Yang, J. Stenvang, 2016, BMC Genomics.

Selective targeting of the oncogenic KRAS G12S mutant allele by CRISPR/Cas9 induces efficient tumor regression

Huanming Yang, Yong Hou, Xu Han, 2020, Theranostics.

Embryonic liver developmental trajectory revealed by single-cell RNA sequencing in the Foxa2eGFP mouse

Xin-Yuan Fu, Yong Hou, Shiping Liu, 2020, Communications Biology.

High-coverage whole-genome analysis of 1220 cancers reveals hundreds of genes deregulated by rearrangement-mediated cis-regulatory alterations

Nuno A. Fonseca, Angela N. Brooks, David T. W. Jones, 2020, Nature Communications.

ADAR1-Dependent RNA Editing Promotes MET and iPSC Reprogramming by Alleviating ER Stress.

Leo J. Lee, Kui Wu, Jochen C. Hartner, 2020, Cell stem cell.

Sequencing of the MHC region defines HLA-DQA1 as the major genetic risk for seropositive rheumatoid arthritis in Han Chinese population

Huijue Jia, Huanming Yang, Jian Wang, 2019, Annals of the rheumatic diseases.

Integrated Analysis Revealed Hub Genes in Breast Cancer

Huanming Yang, Jian Wang, K. Shao, 2018, bioRxiv.

Comparison of variations detection between whole-genome amplification methods used in single-cell resequencing

Ting Wang, Xun Xu, Yong Hou, 2015, GigaScience.

Genome-wide mutational signatures revealed distinct developmental paths for human B cell lymphomas

Kui Wu, Q. Pan-Hammarström, Yong Hou, 2020, The Journal of experimental medicine.

Genomic characterization of lymphomas in patients with inborn errors of immunity

B. Sander, C. Cunningham-Rundles, Likun Du, 2022, Blood advances.

Progress and challenges of sequencing and analyzing circulating tumor cells

K. Shao, Yong Hou, S. Qiu, 2017, Cell Biology and Toxicology.

A Single-Cell Immune Atlas of Triple Negative Breast Cancer Reveals Novel Immune Cell Subsets

Huanming Yang, Jian Wang, Xiuqing Zhang, 2019, bioRxiv.

Metagenome-genome-wide association studies reveal human genetic impact on the oral microbiome

Huijue Jia, Zhuye Jie, Huanming Yang, 2021, bioRxiv.

Mendelian randomization analyses support causal relationships between blood metabolites and the gut microbiome

Huijue Jia, Zhuye Jie, Huanming Yang, 2020, Nature Genetics.

Chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain

Huanming Yang, Pei Zhang, Qiye Li, 2020, Scientific Data.

Cell transcriptomic atlas of the non-human primate Macaca fascicularis

Huanming Yang, Jian Wang, Y. Liu, 2021, Nature.

Single-cell analyses of transcriptional heterogeneity in squamous cell carcinoma of urinary bladder

Song Wu, Yong Hou, Chunxiao Liu, 2016, Oncotarget.

Comparative analysis of sequencing technologies for single-cell transcriptomics

S. Teichmann, Zhichao Miao, K. Natarajan, 2019, Genome Biology.

Genomic basis for RNA alterations in cancer

Mary Goldman, Nuno A. Fonseca, Brian Craft, 2020, Nature.

Sequencing of the MHC region defines HLA-DQA1 as the major independent risk for anti-citrullinated protein antibodies (ACPA)-positive rheumatoid arthritis in Han population

Huijue Jia, Huanming Yang, Jian Wang, 2018, bioRxiv.

Genetic basis of PD-L1 overexpression in diffuse large B-cell lymphomas.

Kui Wu, L. Pasqualucci, Yixin Zeng, 2016, Blood.

Whole-genome and Transcriptome Sequencing of Prostate Cancer Identify New Genetic Alterations Driving Disease Progression.

Huanming Yang, Hancheng Zheng, Xiuqing Zhang, 2017, European urology.

Frequent alterations in cytoskeleton remodelling genes in primary and metastatic lung adenocarcinomas

Xun Xu, Yong Hou, Zhiyu Peng, 2015, Nature Communications.

A comparison of isolated circulating tumor cells and tissue biopsies using whole-genome sequencing in prostate cancer

Shuang Hou, Yong Hou, Huanming Yang, 2015, Oncotarget.

Single-cell landscape of the ecosystem in early-relapse hepatocellular carcinoma

Huanming Yang, Xun Xu, Yong Hou, 2020, Cell.

Conditionally reprogrammed normal and primary tumor prostate epithelial cells: a novel patient-derived cell model for studies of human prostate cancer

J. Rhim, Yong Hou, C. Albanese, 2016, Oncotarget.

Single-cell transcriptional profiling reveals cellular and molecular divergence in human maternal–fetal interface

Huanming Yang, Yong Hou, Yutao Du, 2022, Scientific Reports.

Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2020, Nature Communications.

Comprehensive analysis of immune evasion in breast cancer by single-cell RNA-seq

Huanming Yang, K. Kristiansen, Xiaojuan Qi, 2018, bioRxiv.

Establishment of a Macaca fascicularis gut microbiome gene catalog and comparison with the human, pig, and mouse gut microbiomes

Suisha Liang, Huijue Jia, Xiaoping Li, 2018, GigaScience.

scDPN for High-throughput Single-cell CNV Detection to Uncover Clonal Evolution During HCC Recurrence

Yong Hou, Shiping Liu, Jiarui Xie, 2021, Genom. Proteom. Bioinform..

MethylPurify: tumor purity deconvolution and differential methylation detection from single tumor DNA methylomes

Han Xu, Yong Hou, Hua-Jun Wu, 2014, Genome Biology.

Single-cell atlas of a non-human primate reveals new pathogenic mechanisms of COVID-19

Xun Xu, Liqin Xu, Yong Hou, 2020, bioRxiv.

Dairy consumption and physical fitness tests associated with fecal microbiome in a Chinese cohort

Suisha Liang, Huijue Jia, Zhuye Jie, 2021, Medicine in Microecology.

The gut microbiome in atherosclerotic cardiovascular disease

Xun Xu, Hui Zhao, Yong Hou, 2017, Nature Communications.

Evolution of multiple cell clones over a 29-year period of a CLL patient

Huanming Yang, G. Marti, Kui Wu, 2016, Nature Communications.

Single-cell regulatory landscape and disease vulnerability map of adult Macaque cortex

Huanming Yang, Hongkui Zeng, Bosiljka Tasic, 2020 .

The correlation of copy number variations with longevity in a genome-wide association study of Han Chinese

Huanming Yang, Jian Wang, L. Bolund, 2018, Aging.

A genome-wide association study for gut metagenome in Chinese adults illuminates complex diseases

Huijue Jia, Zhuye Jie, Huanming Yang, 2021, Cell Discovery.

Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer

Huanming Yang, K. Kristiansen, Z. Cai, 2012, GigaScience.

Dissecting spatial heterogeneity and the immune-evasion mechanism of CTCs by single-cell RNA-seq in hepatocellular carcinoma

Yong Hou, Shiping Liu, S. Qiu, 2021, Nature Communications.

Genome profiles of pathologist-defined cell clusters by multiregional LCM and G&T-seq in one triple-negative breast cancer patient

G. Wong, Chao Chen, J. Mackey, 2021, Cell reports. Medicine.

Title: Genome profiles of lymphovascular breast cancer cells reveal multiple clonally differentiated outcomes with multi-regional LCM and G&T-seq Running title: Multi-regional LCM and G&T-seq of LVI cancer cell

G. Wong, Chao Chen, J. Mackey, 2020 .

Genome profiles of lymphovascular breast cancer cells reveal multiple clonally differentiated outcomes with multi-regional LCM and G&T-seq

G. Wong, Chao Chen, J. Mackey, 2019 .

Molecular profiling of lymphovascular invasive cancer cells in TNBC using G&T-seq

G. Wong, Chao Chen, J. Mackey, 2019 .

Circumventing intratumoral heterogeneity to identify potential therapeutic targets in hepatocellular carcinoma.

Kui Wu, Yong Hou, Zhao-You Tang, 2017, Journal of hepatology.

Multiple IgH Isotypes Including IgD, Subclasses of IgM, and IgY Are Expressed in the Common Ancestors of Modern Birds

Jian Wang, Xun Xu, Li Ma, 2016, The Journal of Immunology.

This information is current as the Common Ancestors of Modern Birds Subclasses of IgM , and IgY Are Expressed in Multiple IgH Isotypes Including IgD ,

Jian Wang, Li Ma, Liming Ren, 2016 .

Viral integration drives multifocal HCC during the occult HBV infection

K. Kristiansen, Kui Wu, A. Laurence, 2019, Journal of Experimental & Clinical Cancer Research.

Dynamic cell transition and immune response landscapes of axolotl limb regeneration revealed by single-cell analysis

Shanshan Liu, J. Qu, Weiqi Zhang, 2020, Protein & Cell.

1,520 reference genomes from cultivated human gut bacteria enable functional microbiome analyses

Suisha Liang, Huijue Jia, Zhuye Jie, 2019, Nature Biotechnology.

Network of Interactions Between Gut Microbiome, Host Biomarkers, and Urine Metabolome in Carotid Atherosclerosis

Huijue Jia, Huihua Xia, Zhuye Jie, 2021, Frontiers in Cellular and Infection Microbiology.

Integration of gut microbiome, host biomarkers, and urine metabolome data reveals networks of interactions associated with distinct clinical phenotypes

Huijue Jia, Huihua Xia, Zhuye Jie, 2019, bioRxiv.

Integrated genetic analyses revealed novel human longevity loci and reduced risks of multiple diseases in a cohort study of 15,651 Chinese individuals

Huijue Jia, Huanming Yang, Jian Wang, 2021, Aging cell.

Sex Differences in Genetic Associations With Longevity

A. Yashin, Huanming Yang, J. Vaupel, 2018, JAMA network open.

Disease trends in a young Chinese cohort according to fecal metagenome and plasma metabolites

Suisha Liang, Huijue Jia, Zhuye Jie, 2021, Medicine in Microecology.

HBV Genome-Enriched Single Cell Sequencing Revealed Heterogeneity in HBV-Driven HCC

Jun Zhu, Yong Hou, Shiping Liu, 2021 .

Whole‐exome sequencing in clear cell sarcoma of soft tissue uncovers novel prognostic categorization and drug targets

Chao Chen, Yong Hou, Bo Li, 2021, Clinical and translational medicine.

PIRD: Pan immune repertoire database.

Fei Gao, Lin Fang, Xun Xu, 2019, Bioinformatics.

Single-cell RNA sequencing reveals dynamic changes in A-to-I RNA editome during early human embryogenesis

Huanming Yang, Xiuqing Zhang, Kui Wu, 2016, BMC Genomics.

1D-Reactor Decentralized MDA for Uniform and Accurate Whole Genome Amplification.

Zuhong Lu, Yong Hou, Jing Tu, 2017, Analytical chemistry.

Therapeutic potential of CRISPR/Cas9 gene editing in engineered T‐cell therapy

Linnan Zhu, Yong Hou, Qumiao Xu, 2019, Cancer medicine.

Sex differences in genetic associations with longevity in Han Chinese: sex-stratified genome-wide association study and polygenic risk score analysis

A. Yashin, Huanming Yang, J. Vaupel, 2017 .

Single-cell RNA-seq unveils critical regulators of human FOXP3+ regulatory T cell stability.

Huanming Yang, Jian Wang, Xiao Liu, 2020, Science bulletin.

Junhua Li, Huanming Yang, Jian Wang, 2021, Nature Aging.

Tumor heterogeneity assessed by sequencing and fluorescence in situ hybridization (FISH) data

Russell Schwartz, Alejandro A. Schäffer, Liqin Xu, 2020, bioRxiv.

A transomic cohort as a reference point for promoting a healthy human gut microbiome

Suisha Liang, Huijue Jia, Zhuye Jie, 2021, Medicine in Microecology.

RED-ML: a novel, effective RNA editing detection method based on machine learning

Xun Xu, Liqin Xu, Yong Hou, 2017, GigaScience.

The index patient and samples

Huanming Yang, Jun Wang, Xiuqing Zhang, 2015 .

Sex differences in oncogenic mutational processes

Nuno A. Fonseca, Gary D Bader, Benjamin J. Raphael, 2019, Nature Communications.

The vagino-cervical microbiome as a woman’s life history

Huijue Jia, Zhuye Jie, Jian Wang, 2019 .

A portable and cost-effective microfluidic system for massively parallel single-cell transcriptome profiling

Zhifeng Wang, Xun Xu, Tao Wu, 2019, bioRxiv.

Multiregion single‐cell sequencing reveals the transcriptional landscape of the immune microenvironment of colorectal cancer

Y. Ouyang, Yong Hou, Zhanglin Lin, 2021, Clinical and translational medicine.

Characterizing the Emergence of Liver and Gallbladder from the Embryonic Endoderm through Single-Cell RNA-Seq

Yong Hou, Shiping Liu, K. Zaret, 2019, bioRxiv.

A Probabilistic Approach For Registration Of Multi-Modal Spatial Transcriptomics Data

Yong Hou, Kailong Ma, K. Rohr, 2021, bioRxiv.

Selective targeting of an oncogenic KRAS mutant allele by CRISPR/Cas9 induces efficient tumor regression

Huanming Yang, Yong Hou, Xu Han, 2019, bioRxiv.

Characterization of circulating tumor cells in breast cancer patients by spiral microfluidics

K. Shao, Yong Hou, Guibo Li, 2018, Cell Biology and Toxicology.

The stepwise evolution of the exome during acquisition of docetaxel resistance in breast cancer cells

R. L. Nielsen, Huanming Yang, J. Stenvang, 2016, BMC Genomics.

High Throughput Single Cell RNA Sequencing, Bioinformatics Analysis and Applications.

Yong Hou, Miaomiao Jiang, Liang Wu, 2018, Advances in experimental medicine and biology.

Comparative analysis of sequencing technologies platforms for single-cell transcriptomics

Liang Wu, Sarah A. Teichmann, Yong Hou, 2018, bioRxiv.

Full-length single-cell RNA-seq applied to a viral human cancer: applications to HPV expression and splicing analysis in HeLa S3 cells

Huanming Yang, Jian Wang, K. Kristiansen, 2015, GigaScience.

Identification of the associated expression patterns as potential predictive markers for cancer prognosis

Kui Wu, Yong Hou, Fuqiang Li, 2020, bioRxiv.

Tumor Copy Number Deconvolution Integrating Bulk and Single-Cell Sequencing Data

Russell Schwartz, Alejandro A. Schäffer, Liqin Xu, 2018, bioRxiv.

Platinum Priority – Prostate CancerEditorial by XXX on pp. x-y of this issueWhole-genome and Transcriptome Sequencing of Prostate Cancer Identify New Genetic Alterations Driving Disease Progression

Hancheng Zheng, C. Yin, Yong Hou, 2017 .