D. Na

发表

Categorizer: a tool to categorize genes into user-defined biological groups based on semantic similarity

H. Son, J. Gsponer, D. Na, 2014, BMC Genomics.

Strategies for the optimization of bead-immunoassays for the effective detection of target biomolecules

Muhammad Saad Khan, Sangsoo Kim, D. Na, 2018, Korean Journal of Chemical Engineering.

Systems metabolic engineering of microorganisms for natural and non-natural chemicals.

Jeong Wook Lee, Jong Myoung Park, Sol Choi, 2012, Nature chemical biology.

Metabolic engineering of Escherichia coli using synthetic small regulatory RNAs

J. Park, D. Na, S. Y. Lee, 2013, Nature Biotechnology.

Design and use of synthetic regulatory small RNAs to control gene expression in Escherichia coli

D. Na, S. Y. Lee, S. Yoo, 2013, Nature Protocols.

Rational Drug Design for Pseudomonas aeruginosa PqsA Enzyme: An in silico Guided Study to Block Biofilm Formation

D. Na, Sajjad Ahmad, Seong-il Eyun, 2020, Frontiers in Molecular Biosciences.

Rapid and high-throughput construction of microbial cell-factories with regulatory noncoding RNAs.

Eun Yeol Lee, Dokyun Na, Amit Kumar Chaudhary, 2015, Biotechnology advances.

Hepatotoxicity assay using human hepatocytes trapped in microholes of a microfluidic device

Dokyun Na, J. Park, D. Na, 2010, Electrophoresis.

Metabolic engineering of Escherichia coli for the production of phenol from glucose.

Sang Yup Lee, Dokyun Na, Byoungjin Kim, 2014, Biotechnology journal.

Meta-analysis method for discovering reliable biomarkers by integrating statistical and biological approaches: An application to liver toxicity.

Doheon Lee, D. Na, Hyosil Kim, 2016, Biochemical and biophysical research communications.

Advancement of Metabolic Engineering Assisted by Synthetic Biology

D. Na, Hyang-Mi Lee, P. Vo, 2018, Catalysts.

Widespread alteration of protein autoinhibition in human cancers

Jennifer M. Bui, J. Gsponer, D. Na, 2018, bioRxiv.

Mathematical modeling of humoral immune response suppression by passively administered antibodies in mice.

Doheon Lee, Dongsup Kim, D. Na, 2006, Journal of theoretical biology.

Systems-wide Identification of cis-Regulatory Elements in Proteins.

J. Gsponer, D. Na, J. Yeon, 2016, Cell systems.

Systems Metabolic Engineering for the Production of Non-innate Chemical Compounds

D. Na, M. Kim, S. Y. Lee, 2011 .

User guides for biologists to learn computational methods

D. Na, 2020, Journal of Microbiology.

Gas-mediated cancer therapy combined with starvation therapy, ultrasound therapy, chemotherapy, radiotherapy, and photodynamic therapy: a review

D. Na, B. Shaker, S. B. Thakar, 2021, Environmental Chemistry Letters.

The conserved microRNA miR‐8‐3p coordinates the expression of V‐ATPase subunits to regulate ecdysone biosynthesis for Drosophila metamorphosis

D. Na, Do‐Hwan Lim, Young Sik Lee, 2020, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Combined chemical and physical transformation method with RbCl and sepiolite for the transformation of various bacterial species.

D. Na, Haram Lee, Hansoo Park, 2017, Journal of microbiological methods.

Synthetic inter-species cooperation of host and virus for targeted genetic evolution.

Doheon Lee, D. Na, G. Yi, 2011, Journal of biotechnology.

Optimization of chemico-physical transformation methods for various bacterial species using diverse chemical compounds and nanomaterials.

D. Na, S. Yoo, Jun Ren, 2018, Journal of biotechnology.

Identification of a cytosine methyltransferase that improves transformation efficiency in Methylomonas sp. DH-1

D. Na, Hyang-Mi Lee, Thi Duc Thai, 2020, Biotechnology for Biofuels.

In silico methods and tools for drug discovery

Dokyun Na, Chanjin Jung, Bilal Shaker, 2021, Comput. Biol. Medicine.

Synthetically engineered microbial scavengers for enhanced bioremediation.

D. Na, Hyang-Mi Lee, Seong-il Eyun, 2021, Journal of hazardous materials.

Cytotoxic Effects of Plant Sap-Derived Extracellular Vesicles on Various Tumor Cell Types

Ji-Ho Park, D. Na, J. Yeon, 2020, Journal of functional biomaterials.

Enhanced therapeutic efficacy of lipophilic amphotericin B against Candida albicans with amphiphilic poly(N-isopropylacrylamide) nanogels

D. Na, Hansoo Park, Nopphadol Udomluck, 2014, Macromolecular Research.

Anti-melanogenic effects of extracellular vesicles derived from plant leaves and stems in mouse melanoma cells and human healthy skin

D. Na, J. Yeon, Jeong Ah Kim, 2019, Journal of extracellular vesicles.

Construction and optimization of synthetic pathways in metabolic engineering.

Sang Yup Lee, Dokyun Na, Tae Yong Kim, 2010, Current opinion in microbiology.

Artificial transformation methodologies for improving the efficiency of plasmid DNA transformation and simplifying its use

D. Na, S. Yoo, Jun Ren, 2019, Applied Microbiology and Biotechnology.

Cancer-Associated Fibroblasts Differentiated by Exosomes Isolated from Cancer Cells Promote Cancer Cell Invasion

J. Kang, D. Na, Nakwon Choi, 2020, International journal of molecular sciences.

Changes in cellular microRNA expression induced by porcine circovirus type 2-encoded proteins

D. Na, T. Chun, Jae-Sang Hong, 2015, Veterinary Research.

High Correlation between Alu Elements and the Conversion of 3' UTR of mRNAs Processed Pseudogenes

Hyeong Jun An, Doheon Lee, J. Bhak, 2004 .

PLPD: reliable protein localization prediction from imbalanced and overlapped datasets

Doheon Lee, KiYoung Lee, Doheon Lee, 2006, Nucleic acids research.

Cancer-derived exosomes trigger endothelial to mesenchymal transition followed by the induction of cancer-associated fibroblasts.

Jaesung Park, J. Kang, D. Na, 2018, Acta biomaterialia.

Introduction of Advanced Methods for Structure-based Drug Discovery

Bilal Shaker, Kha Mong Tran, Chanjin Jung, 2020 .

Tunable Gene Expression System Independent of Downstream Coding Sequence.

D. Na, S. Y. Lee, S. Yoo, 2020, ACS synthetic biology.

Computational Design of a Multi-Epitope Vaccine Against Porphyromonas gingivalis

D. Na, Sajjad Ahmad, B. Shaker, 2022, Frontiers in Immunology.

Advanced biotechnology using methyltransferase and its applications in bacteria: a mini review

D. Na, Hyang-Mi Lee, Jun Ren, 2021, Biotechnology Letters.

Introduction of an AU-rich Element into the 5’ UTR of mRNAs Enhances Protein Expression in Escherichia coli by S1 Protein and Hfq Protein

D. Na, Hyang-Mi Lee, Seong-il Eyun, 2021, Biotechnology and Bioprocess Engineering.

Optimization of phage λ promoter strength for synthetic small regulatory RNA-based metabolic engineering

D. Na, S. Y. Lee, S. Yoo, 2016, Biotechnology and Bioprocess Engineering.

NeuroGeM, a knowledgebase of genetic modifiers in neurodegenerative diseases

D. Rubinsztein, J. Gsponer, D. Na, 2013, BMC Medical Genomics.

Nanotechnology for diagnosis and treatment of infectious diseases.

Hansoo Park, D. Na, D. Lim, 2014, Journal of nanoscience and nanotechnology.

LightBBB: computational prediction model of blood-brain-barrier penetration based on LightGBM

Jae Yong Ryu, Myeong-Sang Yu, Bilal Shaker, 2020, Bioinform..

NeuroGeM, a knowledgebase of genetic modifiers in neurodegenerative diseases

D. Rubinsztein, J. Gsponer, D. Na, 2013, BMC Medical Genomics.

Optimized expression of Hfq protein increases Escherichia coli growth

D. Na, Hyang-Mi Lee, P. Vo, 2021, Journal of biological engineering.

Mathematical modeling of translation initiation for the estimation of its efficiency to computationally design mRNA sequences with desired expression levels in prokaryotes

Doheon Lee, Sunjae Lee, Dokyun Na, 2010, BMC Systems Biology.

Reliable permeability assay system in a microfluidic device mimicking cerebral vasculatures

Chulhee Choi, Dokyun Na, Ju Hun Yeon, 2012, Biomedical Microdevices.

Identification of efficient prokaryotic cell-penetrating peptides with applications in bacterial biotechnology

D. Na, Hyang-Mi Lee, Jun Ren, 2021, Communications Biology.

User guide for the discovery of potential drugs via protein structure prediction and ligand docking simulation

Jingyu Lee, Dokyun Na, Yongmin Lee, 2020, Journal of Microbiology.

Recent Advances in Micro/Nanomaterial-Based Aptamer Selection Strategies

D. Na, Dong-min Kim, S. Yoo, 2021, Molecules.

In silico prediction of potential chemical reactions mediated by human enzymes

D. Na, Hyang-Mi Lee, Chungoo Park, 2018, BMC Bioinformatics.

In silico approaches and tools for the prediction of drug metabolism and fate: A review

Ren Jun, Dokyun Na, Myeong-Sang Yu, 2019, Comput. Biol. Medicine.

A microfluidic system for the separation and detection of E. coli O157:H7 in soil sample using ternary interactions between humic acid, bacteria, and a hydrophilic surface

D. Na, J. Min, Hee Yeon Kim, 2015 .

Comparability of reference-based and reference-free transcriptome analysis approaches at the gene expression level

Dokyun Na, Sung-Gwon Lee, Chungoo Park, 2021, BMC Bioinformatics.

Construction of a tunable promoter library to optimize gene expression in Methylomonas sp. DH-1, a methanotroph, and its application to cadaverine production

D. Na, Hyang-Mi Lee, S. Yoo, 2021, Biotechnology for Biofuels.

Synthetic bacteria for the detection and bioremediation of heavy metals

D. Na, Thi Duc Thai, Won-Mook Lim, 2023, Frontiers in Bioengineering and Biotechnology.

MicroRNA signatures associated with thioacetamide-induced liver fibrosis in mice

D. Na, Jae-Sang Hong, Young Sik Lee, 2017, Bioscience, biotechnology, and biochemistry.

Synthetic Bacteria for Therapeutics

D. Na, Hyang-Mi Lee, VO PhuongN.Lam, 2019 .

Optimized expression of Hfq protein increases Escherichia coli growth

D. Na, P. Vo, Jun Ren, 2020, Journal of Biological Engineering.

2-D chemical structure image-based in silico model to predict agonist activity for androgen receptor

Jingyu Lee, Dokyun Na, Myeong-Sang Yu, 2020, BMC Bioinformatics.

On the Importance of Polar Interactions for Complexes Containing Intrinsically Disordered Proteins

Jörg Gsponer, Dokyun Na, Eric T. C. Wong, 2013, PLoS Comput. Biol..

Anti-Metastatic Effects of Plant Sap-Derived Extracellular Vesicles in a 3D Microfluidic Cancer Metastasis Model

Ji-Ho Park, D. Na, J. Yeon, 2020, Journal of functional biomaterials.

Microengineered platforms for co-cultured mesenchymal stem cells towards vascularized bone tissue engineering

D. Na, Hansoo Park, D. Lim, 2016, Tissue Engineering and Regenerative Medicine.

Computational determination of hERG-related cardiotoxicity of drug candidates

Sayada Reemsha Kazmi, Seong Yun Oh, D. Na, 2019, BMC Bioinformatics.

Systems Metabolic Engineering of Escherichia coli for Chemicals, Materials, Biofuels, and Pharmaceuticals

Sang Yup Lee, Jeong Wook Lee, Dokyun Na, 2012 .

Fuzzy Continuous Petri Net-Based Approach for Modeling Helper T Cell Differentiation

Kwang Hyung Lee, Doheon Lee, Inho Park, 2005, ICARIS.

Mathematical Modeling of Immune Suppression

Doheon Lee, Dokyun Na, Doheon Lee, 2005, ICARIS.

Reliable permeability assay system in a microfluidic device mimicking cerebral vasculatures

Chulhee Choi, J. Park, D. Na, 2012, Biomedical microdevices.

Recent advances in genetic engineering tools based on synthetic biology

D. Na, Jun Ren, Jingyu Lee, 2020, Journal of Microbiology.

Integration of Immune Models Using Petri Nets

Doheon Lee, Kwang Hyung Lee, Inho Park, 2004, ICARIS.

DNA steganography: hiding undetectable secret messages within the single nucleotide polymorphisms of a genome and detecting mutation-induced errors

Dokyun Na, D. Na, 2020, Microbial Cell Factories.

Computational determination of hERG-related cardiotoxicity of drug candidates

Kwang-Seok Oh, Byung Ho Lee, Donghyun Lee, 2019, BMC Bioinformatics.

Bioinformatics Applications Note Gene Expression Rbsdesigner: Software for Designing Synthetic Ribosome Binding Sites That Yields a Desired Level of Protein Expression

Doheon Lee, Dokyun Na, Doheon Lee, 2022 .

Functional small peptides for enhanced protein delivery, solubility, and secretion in microbial biotechnology.

D. Na, Thi Duc Thai, Won-Mook Lim, 2023, Journal of biotechnology.

Hepatotoxicity assay using human hepatocytes trapped in microholes of a microfluidic device

J. Park, D. Na, J. Yeon, 2010, Electrophoresis.

Systems-wide Identification of cis-Regulatory Elements in Proteins.

J. Gsponer, D. Na, J. Yeon, 2016, Cell systems.

Synthetic bacteria for therapeutics: applications of synthetic systems.

D. Na, Hyang-Mi Lee, P. Vo, 2019, Journal of microbiology and biotechnology.

Recent advances in genetic engineering tools based on synthetic biology

Jun Ren, Jingyu Lee, Dokyun Na, 2020, Journal of Microbiology.

Microengineered platforms for co-cultured mesenchymal stem cells towards vascularized bone tissue engineering

D. Na, Hansoo Park, D. Lim, 2016, Tissue Engineering and Regenerative Medicine.

RBSDesigner: software for designing synthetic ribosome binding sites that yields a desired level of protein expression

Doheon Lee, D. Na, 2010, Bioinform..