S. Nakano

发表

Thermodynamic parameters to predict stability of RNA/DNA hybrid duplexes.

N. Sugimoto, S. Nakano, M. Katoh, 1995, Biochemistry.

Improved thermodynamic parameters and helix initiation factor to predict stability of DNA duplexes.

N. Sugimoto, S. Nakano, M. Yoneyama, 1996, Nucleic acids research.

An oligopeptide containing the C-terminal sequence of RNase a has a potent RNase a binding property.

N. Sugimoto, S. Nakano, 2003, Journal of the American Chemical Society.

Influences of ribonucleotide on a duplex conformation and its thermal stability: study with the chimeric RNA-DNA strands.

N. Sugimoto, S. Nakano, T. Kanzaki, 2004, Journal of the American Chemical Society.

Hammerhead ribozyme activity and oligonucleotide duplex stability in mixed solutions of water and organic compounds

N. Sugimoto, S. Nakano, D. Miyoshi, 2014, FEBS open bio.

Beads-on-a-string structure of long telomeric DNAs under molecular crowding conditions.

N. Sugimoto, S. Nakano, D. Miyoshi, 2012, Journal of the American Chemical Society.

Drastic Stabilization of Parallel DNA Hybridizations by a Polylysine Comb‐Type Copolymer with Hydrophilic Graft Chain

N. Sugimoto, A. Maruyama, S. Nakano, 2014, ChemMedChem.

The effect of molecular crowding with nucleotide length and cosolute structure on DNA duplex stability.

N. Sugimoto, S. Nakano, T. Ohmichi, 2004, Journal of the American Chemical Society.

Dynamics and energetics of the base flipping conformation studied with base pair-mimic nucleosides.

N. Sugimoto, S. Nakano, M. Fujii, 2009, Biochemistry.

DNA content contributes to nuclear size control in Xenopus laevis

S. Nakano, Yuki Hara, Y. Iwao, 2020, Molecular biology of the cell.

Effect of locked nucleic acid modifications on the thermal stability of noncanonical DNA structure.

N. Sugimoto, S. Nakano, S. Maiti, 2011, Biochemistry.

Influences of Molecular Crowding on the Properties and Functions of Biomolecules

N. Sugimoto, S. Nakano, 2006 .

Effects of background anionic compounds on the activity of the hammerhead ribozyme in Mg2+-unsaturated solutions

N. Sugimoto, S. Nakano, D. Miyoshi, 2015, JBIC Journal of Biological Inorganic Chemistry.

Evaluation of Thermal Stability of DNA Oligonucleotide Structures Embedded in Hydrogels

S. Nakano, D. Yamaguchi, M. Yoshida, 2022, DNA.

Conformational changes of the phenyl and naphthyl isocyanate-DNA adducts during DNA replication and by minor groove binding molecules

N. Sugimoto, S. Nakano, M. Fujii, 2013, Nucleic acids research.

Base-pairing selectivity of a ureido-linked phenyl-2'-deoxycytidine derivative.

N. Sugimoto, S. Nakano, M. Fujii, 2012, Organic & biomolecular chemistry.

Large stabilization of a DNA duplex by the deoxyadenosine derivatives tethering an aromatic hydrocarbon group.

N. Sugimoto, S. Nakano, M. Fujii, 2003, Journal of the American Chemical Society.

Effects of molecular crowding on the structures, interactions, and functions of nucleic acids.

N. Sugimoto, S. Nakano, D. Miyoshi, 2014, Chemical reviews.

DNA G-Wire Formation Using an Artificial Peptide is Controlled by Protease Activity

S. Nakano, K. Usui, Y. Hamada, 2017, Molecules.

Newly characterized interaction stabilizes DNA structure: oligoethylene glycols stabilize G-quadruplexes CH–π interactions

N. Sugimoto, S. Nakano, J. Plavec, 2017, Nucleic acids research.

Site-selective RNA cleavage by DNA bearing a base pair-mimic nucleoside.

N. Sugimoto, S. Nakano, M. Fujii, 2005, Journal of the American Chemical Society.

Effects of trimethylamine N-oxide and urea on DNA duplex and G-quadruplex

N. Sugimoto, A. Maruyama, S. Nakano, 2016, Science and technology of advanced materials.

Facilitation of RNA enzyme activity in the molecular crowding media of cosolutes.

N. Sugimoto, S. Nakano, Y. Kitagawa, 2009, Journal of the American Chemical Society.

The structural stability and catalytic activity of DNA and RNA oligonucleotides in the presence of organic solvents

N. Sugimoto, S. Nakano, 2016, Biophysical Reviews.

Structural competition involving G-quadruplex DNA and its complement.

N. Sugimoto, S. Nakano, D. Miyoshi, 2003, Biochemistry.

Conformation and the sodium ion condensation on DNA and RNA structures in the presence of a neutral cosolute as a mimic of the intracellular media.

N. Sugimoto, M. Kuwahara, H. Sawai, 2008, Molecular bioSystems.

RNA/DNA hybrid duplexes with identical nearest‐neighbor base‐pairs have identical stability

N. Sugimoto, S. Nakano, M. Katoh, 1994, FEBS letters.

Catalytic roles for proton transfer and protonation in ribozymes.

T. S. Brown, S. Nakano, P. Bevilacqua, 2004, Biopolymers.

Use of Nucleic Acid Analogs for the Study of Nucleic Acid Interactions

N. Sugimoto, S. Nakano, M. Fujii, 2011, Journal of nucleic acids.

Quantitative Analyses of Nucleic Acid Stability Under the Molecular Crowding Condition Induced by Cosolutes

N. Sugimoto, S. Nakano, H. Tateishi-Karimata, 2013, Current protocols in nucleic acid chemistry.

DNA base flipping by a base pair-mimic nucleoside

N. Sugimoto, S. Nakano, M. Fujii, 2005, Nucleic acids research.

Nucleic acid duplex stability: influence of base composition on cation effects.

N. Sugimoto, S. Nakano, H. Hara, 1999, Nucleic acids research.

Thermal Stability of RNA Structures with Bulky Cations in Mixed Aqueous Solutions.

N. Sugimoto, S. Nakano, Yuichi Tanino, 2016, Biophysical journal.

Effects of Cosolvents on the Folding and Catalytic Activities of the Hammerhead Ribozyme

N. Sugimoto, S. Nakano, D. Miyoshi, 2015, Chembiochem : a European journal of chemical biology.

Dimerization of nucleic acid hairpins in the conditions caused by neutral cosolutes.

N. Sugimoto, S. Nakano, D. Miyoshi, 2012, The journal of physical chemistry. B.

Stabilization of DNA Loop Structures by Large Cations.

N. Sugimoto, S. Nakano, Yuichi Tanino, 2019, The journal of physical chemistry. B.

Thermodynamics-hydration relationships within loops that affect G-quadruplexes under molecular crowding conditions.

N. Sugimoto, S. Nakano, D. Miyoshi, 2013, The journal of physical chemistry. B.

The Effects of Molecular Crowding on the Structure and Stability of G-Quadruplexes with an Abasic Site

N. Sugimoto, S. Nakano, D. Miyoshi, 2011, Journal of nucleic acids.

Thermodynamic stability of Hoogsteen and Watson-Crick base pairs in the presence of histone H3-mimicking peptide.

N. Sugimoto, S. Nakano, J. Matsui, 2011, Chemical communications.

Duplex dissociation of telomere DNAs induced by molecular crowding.

N. Sugimoto, S. Nakano, D. Miyoshi, 2004, Journal of the American Chemical Society.

Modulation of Ribozyme and Deoxyribozyme Activities Using Tetraalkylammonium Ions.

N. Sugimoto, S. Nakano, Takaaki Watabe, 2017, Chemphyschem : a European journal of chemical physics and physical chemistry.

Catalytic Activities of Ribozymes and DNAzymes in Water and Mixed Aqueous Media

N. Sugimoto, S. Nakano, M. Horita, 2017 .

Model studies of the effects of intracellular crowding on nucleic acid interactions.

N. Sugimoto, S. Nakano, 2016, Molecular bioSystems.

Dangling Ends Perturb the Stability of RNA Duplexes Responsive to Surrounding Conditions

N. Sugimoto, S. Nakano, D. Miyoshi, 2014, ChemMedChem.

Hydration changes upon DNA folding studied by osmotic stress experiments.

N. Sugimoto, S. Nakano, D. Miyoshi, 2012, Biophysical journal.

Thermodynamics-structure relationship of single mismatches in RNA/DNA duplexes.

N. Sugimoto, S. Nakano, M. Nakano, 2000, Biochemistry.

Study on effects of molecular crowding on G-quadruplex-ligand binding and ligand-mediated telomerase inhibition.

N. Sugimoto, S. Nakano, D. Miyoshi, 2013, Methods.

Hydroxyl groups in cosolutes regulate the G-quadruplex topology of telomeric DNA.

N. Sugimoto, S. Nakano, D. Miyoshi, 2020, Biochemical and Biophysical Research Communications - BBRC.

Design of allele‐specific primers and detection of the human ABO genotyping to avoid the pseudopositive problem

N. Sugimoto, H. Oka, S. Nakano, 2008, Electrophoresis.

Thermodynamic properties of water molecules in the presence of cosolute depend on DNA structure: a study using grid inhomogeneous solvation theory

N. Sugimoto, F. Tama, O. Miyashita, 2015, Nucleic acids research.

Molecular crowding of the cosolutes induces an intramolecular i-motif structure of triplet repeat DNA oligomers at neutral pH.

Naoki Sugimoto, Arivazhagan Rajendran, N. Sugimoto, 2010, Chemical communications.

Temperature dependence of thermodynamic properties for DNA/DNA and RNA/DNA duplex formation.

Naoki Sugimoto, N. Sugimoto, S. Nakano, 2002, European journal of biochemistry.

A role for upstream RNA structure in facilitating the catalytic fold of the genomic hepatitis delta virus ribozyme.

S. Nakano, P. Bevilacqua, S. M. Knudsen, 2000, Journal of molecular biology.

Roles of the Amino Group of Purine Bases in the Thermodynamic Stability of DNA Base Pairing

N. Sugimoto, S. Nakano, 2014, Molecules.

Single-Stranded DNA Recognition of a 24-mer Peptide Derived from RecA Protein

N. Sugimoto, S. Nakano, 1998 .

A 24 mer peptide derived from RecA protein can discriminate a single-stranded DNA from a double-stranded DNA

N. Sugimoto, S. Nakano, 1997 .

A 24 mer peptide with activities of discrimination and recombination of nucleic acids

N. Sugimoto, S. Nakano, 1999 .

Neuronal differentiation of neural progenitor cells by intracellular delivery of synthetic oligopeptide derived from Von Hippel-Lindau protein.

N. Sugimoto, S. Nakano, H. Kanno, 2009, Protein and peptide letters.

Measurements of the binding of a large protein using a substrate density-controlled DNA chip.

N. Sugimoto, S. Nakano, D. Miyoshi, 2011, Analytical chemistry.

General acid-base catalysis in the mechanism of a hepatitis delta virus ribozyme.

S. Nakano, P. Bevilacqua, D. Chadalavada, 2000, Science.

Central Dogma for a Molecular Design Based on DNA: DNB (Databasing/Designable Nanobio) → ENB (Engineering Nanobio) → FNB (Functional Nanobio)

N. Sugimoto, S. Nakano, 2005 .

Mechanistic characterization of the HDV genomic ribozyme: classifying the catalytic and structural metal ion sites within a multichannel reaction mechanism.

S. Nakano, P. Bevilacqua, A. Cerrone, 2003, Biochemistry.

Effects of Polyethylene Glycol on DNA Duplex Stability at Different NaCl Concentrations

N. Sugimoto, S. Nakano, H. Karimata, 2007 .

Influence of cationic molecules on the hairpin to duplex equilibria of self-complementary DNA and RNA oligonucleotides

N. Sugimoto, M. Kuwahara, H. Sawai, 2006, Nucleic acids research.

Capture of cationic ligands bound diffusely to base pairs during DNA refolding.

N. Sugimoto, S. Nakano, Toshimasa Kirihata, 2008, Chemical communications.

Mechanistic characterization of the HDV genomic ribozyme: a mutant of the C41 motif provides insight into the positioning and thermodynamic linkage of metal ions and protons.

S. Nakano, P. Bevilacqua, 2007, Biochemistry.

A DNA duplex with extremely enhanced thermal stability based on controlled immobilization on gold nanoparticles.

N. Sugimoto, S. Nakano, Y. Shibata, 2006, Nano letters.

A reversible B-A transition of DNA duplexes induced by synthetic cationic copolymers.

N. Sugimoto, A. Maruyama, S. Nakano, 2016, Chemical communications.

Mechanistic characterization of the HDV genomic ribozyme: assessing the catalytic and structural contributions of divalent metal ions within a multichannel reaction mechanism.

S. Nakano, P. Bevilacqua, David J. Proctor, 2001, Biochemistry.

Stabilization factors affecting duplex formation of peptide nucleic acid with DNA.

N. Sugimoto, S. Nakano, K. Yasuda, 2001, Biochemistry.

The effect of the structure of cosolutes on the DNA duplex formation.

N. Sugimoto, S. Nakano, Xiao-Bo Gu, 2006, Nucleic Acids Symposium Series.

Basic protein- and peptide-induced stabilization of long-loop DNA G-guadruplexes.

S. Nakano, Kazuya Tanabe, Kouichi Miyazaki, 2023, Biochimie.

Proton inventory of the genomic HDV ribozyme in Mg(2+)-containing solutions.

S. Nakano, P. Bevilacqua, 2001, Journal of the American Chemical Society.

Thermal stability and conformation of DNA and proteins under the confined condition in the matrix of hydrogels

N. Sugimoto, S. Nakano, D. Yamaguchi, 2018, Molecular Biology Reports.