P. Vallone

发表

AutoDimer: a screening tool for primer-dimer and hairpin structures.

J. Butler, P. Vallone, 2004, BioTechniques.

A multiplex allele-specific primer extension assay for forensically informative SNPs distributed throughout the mitochondrial genome

T. Parsons, J. Butler, P. Vallone, 2004, International Journal of Legal Medicine.

Toward increased utility of mtDNA in forensic identifications.

T. Parsons, J. Butler, P. Vallone, 2004, Forensic science international.

Platinum-Quality Mitogenome Haplotypes from United States Populations

Kevin M. Kiesler, W. Parson, P. Vallone, 2020, Genes.

Sequence variation observed in 27 Y-STR markers with U.S. population samples

Kevin M. Kiesler, P. Vallone, K. Gettings, 2019 .

Sequence‐based US population data for the SE33 locus

Kevin M. Kiesler, P. Vallone, K. Gettings, 2018, Electrophoresis.

Sequence-based U.S. population data for 27 autosomal STR loci.

Carolyn R. Steffen, Peter M. Vallone, Lisa A. Borsuk, 2018, Forensic science international. Genetics.

Sequencing of the highly polymorphic STR locus SE33

Kevin M. Kiesler, P. Vallone, K. Gettings, 2017 .

Initial assessment of the Precision ID Globalfiler Mixture ID panel on the Ion Torrent S5XL DNA sequencer and Converge v2.0 software

Kevin M. Kiesler, P. Vallone, M. Coble, 2017 .

STRSeq: A catalog of sequence diversity at human identification Short Tandem Repeat loci.

Bruce Budowle, Peter M Vallone, Walther Parson, 2017, Forensic science international. Genetics.

Sequence variation of 22 autosomal STR loci detected by next generation sequencing.

Peter M Vallone, Katherine Butler Gettings, Seth A Faith, 2016, Forensic science international. Genetics.

STR allele sequence variation: Current knowledge and future issues.

Peter M Vallone, Katherine Butler Gettings, Rachel A. Aponte, 2015, Forensic science international. Genetics.

Performance of a next generation sequencing SNP assay on degraded DNA.

Kevin M. Kiesler, P. Vallone, K. Gettings, 2015, Forensic science international. Genetics.

Forensic typing of autosomal SNPs with a 29 SNP-multiplex--results of a collaborative EDNAP exercise.

W Parson, P Gill, N Morling, 2008, Forensic science international. Genetics.

Development and usage of a NIST standard reference material for real time PCR quantitation of human DNA

Melody V. Smith, J. Butler, P. Vallone, 2008 .

Testing Candidate DNA Quantitation Standards with Several Real-Time Quantitative PCR Methods | NIST

J. Butler, P. Vallone, D. Duewer, 2005 .

Linkage disequilibrium analysis of D12S391 and vWA in U.S. population and paternity samples.

J. Butler, P. Vallone, C. Hill, 2011, Forensic science international. Genetics.

Evaluating the Effect of Additional Forensic Loci on Likelihood Ratio Values for Complex Kinship Analysis

J. Butler, P. Vallone, C. Hill, 2010 .

New autosomal STR loci

J. Butler, P. Vallone, A. Decker, 2008 .

Characterization and performance of new MiniSTR loci for typing degraded samples

J. Butler, P. Vallone, M. Coble, 2006 .

Understanding the behavior of stutter through the sequencing of STR alleles

P. Vallone, L. Borsuk, S. Riman, 2019 .

Classification of STR allelic variation using massively parallel sequencing and assessment of flanking region power.

P. Vallone, D. Ballard, K. Gettings, 2020, Forensic science international. Genetics.

Ethical publication of research on genetics and genomics of biological material: guidelines and recommendations

Á. Carracedo, J. Butler, W. Parson, 2020, Forensic Science International: Reports.

On the suppression of FSI genetics from the 2019 journal citations report.

Á. Carracedo, J. Butler, W. Parson, 2020, Forensic science international. Genetics.

Affine analysis for quantitative PCR measurements

Anthony J. Kearsley, Erica L. Romsos, Paul N. Patrone, 2020, Analytical and Bioanalytical Chemistry.

Genotyping SNPs using a UV-photocleavable oligonucleotide in MALDI-TOF MS.

M. Kostrzewa, P. Vallone, K. Fahr, 2005, Methods in molecular biology.

Genotyping of two mutations in the HFE gene using single-base extension and high-performance liquid chromatography.

E. L. Pettit, J. Butler, P. Vallone, 2001, Analytical chemistry.

Forensic performance of insertion–deletion marker systems

Á. Carracedo, J. Butler, P. Vallone, 2011 .

Predicting sequence-dependent melting stability of short duplex DNA oligomers.

P. Vallone, A. S. Benight, R. Owczarzy, 1997, Biopolymers.

Cautionary note on contamination of reagents used for molecular detection of SARS-CoV-2

V. Beneš, M. Salit, J. Vandesompele, 2020, Clinical chemistry.

Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in six 22-base pair deoxyoligonucleotides.

P. Vallone, P. Riccelli, A. S. Benight, 1999, Biochemistry.

Thermodynamic, spectroscopic, and equilibrium binding studies of DNA sequence context effects in four 40 base pair deoxyoligonucleotides.

P. Vallone, A. S. Benight, 2000, Biochemistry.

DNA purification from crude samples for human identification using gradient elution isotachophoresis

E. Strychalski, D. Ross, P. Vallone, 2013, Electrophoresis.

A response to a correspondence letter by Buckleton et al. on: Riman et al. (2021) Examining performance and likelihood ratios for two likelihood ratio systems using the PROVEDIt dataset, PLoS One 16(9):e0256714.

P. Vallone, S. Riman, H. Iyer, 2022, Forensic science international. Genetics.

A roadmap to better COVID-19 testing from the Coronavirus Standards Working Group

M. Salit, J. Vandesompele, J. Sninsky, 2021 .

Quality control of PCR primers used in multiplex STR amplification reactions.

J. Butler, P. Vallone, J. Devaney, 2001, Forensic science international.

Chromosomal duplications along the Y-chromosome and their potential impact on Y-STR interpretation.

Amy E. Decker, J. Butler, P. Vallone, 2005, Journal of forensic sciences.

Allele frequencies for 70 autosomal SNP loci with U.S. Caucasian, African-American, and Hispanic samples.

Amy E. Decker, J. Butler, P. Vallone, 2005, Forensic science international.

NIST Scientific Foundation Reviews

Melissa K. Taylor, P. Vallone, J. Butler, 2018 .

Rapid amplification of commercial STR typing kits

J. Butler, P. Vallone, D. Podini, 2009 .

Investigating the effects of different library preparation protocols on STR sequencing

P. Vallone, K. Gettings, L. Borsuk, 2017 .

Highly multiplexed assays for measuring polymorphisms on the Y-chromosome

J. Butler, P. Vallone, R. Schoske, 2003 .

1 Development of Y STR Megaplex Assays

M. Hammer, J. Butler, P. Vallone, 2001 .

Development of Y STR Megaplex Assays

M. Hammer, J. Butler, P. Vallone, 2001 .

Direct PCR Amplification of STR Loci: Protocols and Performance

P. Vallone, C. Hill, 2011 .

Characterization of U.S. population samples using a 34plex ancestry informative SNP multiplex

Á. Carracedo, J. Butler, P. Vallone, 2011 .

A history of adventitious agent contamination and the current methods to detect and remove them from pharmaceutical products.

P. Vallone, W. G. Valiant, K. Cai, 2022, Biologicals : journal of the International Association of Biological Standardization.

Analysis of artificially degraded DNA using STRs and SNPs--results of a collaborative European (EDNAP) exercise.

W Parson, P Gill, M D Coble, 2006, Forensic science international.

Ethical publication of research on genetics and genomics of biological material: guidelines and recommendations.

John M Butler, Walther Parson, Peter M Schneider, 2020, Forensic science international. Genetics.

One in seven pathogenic variants can be challenging to detect by NGS: an analysis of 450,000 patients with implications for clinical sensitivity and genetic test implementation

S. Seal, M. Kennemer, R. Nussbaum, 2020, Genetics in Medicine.

Characterization of NIST human mitochondrial DNA SRM-2392 and SRM-2392-I standard reference materials by next generation sequencing.

Sarah Riman, P. Vallone, L. Borsuk, 2017, Forensic science international. Genetics.

Studies of DNA dumbbells VIII. Melting analysis of DNA dumbbells with dinucleotide repeat stem sequences

P. Vallone, P. Riccelli, A. S. Benight, 2006, Biopolymers.

Studies of DNA dumbbells VII: Evaluation of the next‐nearest‐neighbor sequence‐dependent interactions in duplex DNA

Richard Owczarzy, R. Goldstein, P. Vallone, 1999, Biopolymers.

Analysis of DNA Single Nucleotide Polymorphisms by Mass Spectrometry | NIST

J. Butler, P. Vallone, 2005 .

Evaluating Self-declared Ancestry of U.S. Americans with Autosomal, Y-chromosomal and Mitochondrial DNA

Peter M Vallone, Manfred Kayser, Kristiaan J van der Gaag, 2010, Human mutation.

Inferring Continental Ancestry of Argentineans from Autosomal, Y‐Chromosomal and Mitochondrial DNA

P. de Knijff, O. Lao, W. Parson, 2010, Annals of human genetics.

Evidence for multi-copy Mega-NUMTs in the human genome

Erica L. Romsos, Fengtang Yang, T. Parsons, 2021, Nucleic acids research.

Revision of the SNPforID 34-plex forensic ancestry test: Assay enhancements, standard reference sample genotypes and extended population studies.

M V Lareu, C Phillips, J M Butler, 2013, Forensic science international. Genetics.

Autosomal SNP typing of forensic samples with the GenPlex™ HID System: results of a collaborative study.

K. Neureuther, R. Fang, P. Vallone, 2011, Forensic science international. Genetics.

RNA reference materials with defined viral RNA loads of SARS-CoV-2—A useful tool towards a better PCR assay harmonization

A. Berger, H. Zeichhardt, S. Ciesek, 2022, PloS one.

Forensic performance of two insertion–deletion marker assays

Á. Carracedo, J. Butler, P. Vallone, 2012, International Journal of Legal Medicine.

Multiplex PCR design strategy used for the simultaneous amplification of 10 Y chromosome short tandem repeat (STR) loci

Richard Schoske, Christian M. Ruitberg, J. Butler, 2003, Analytical and bioanalytical chemistry.

International Comparison of Enumeration-Based Quantification of DNA Copy-Concentration Using Flow Cytometric Counting and Digital Polymerase Chain Reaction.

Mojca Milavec, Philippe Corbisier, Jing Wang, 2016, Analytical chemistry.

Developmental validation of a fully integrated sample-to-profile rapid human identification system for processing single-source reference buccal samples.

Peter M Vallone, Mattias Vangbo, Helen Franklin, 2015, Forensic science international. Genetics.

An interlaboratory study of complex variant detection

Marc L. Salit, Eric W. Klee, Nazneen Rahman, 2017, bioRxiv.

Production and certification of NIST Standard Reference Material 2372 Human DNA Quantitation Standard

Peter M Vallone, David L Duewer, Melody V. Smith, 2009, Analytical and bioanalytical chemistry.

Results of the 2018 Rapid DNA Maturity Assessment

Erica L. Romsos, Thomas F. Callaghan, P. Vallone, 2020, Journal of forensic sciences.

Developmental validation of the ANDE™ rapid DNA system with FlexPlex™ assay for arrestee and reference buccal swab processing and database searching.

Peter M Vallone, Erica L. Romsos, Christopher Carney, 2019, Forensic science international. Genetics.

Rapid PCR of STR markers: Applications to human identification.

Peter M Vallone, Erica L. Romsos, Erica L Romsos, 2015, Forensic science international. Genetics.

A novel multiplex for simultaneous amplification of 20 Y chromosome STR markers.

M. Hammer, J. Butler, P. Vallone, 2002, Forensic science international.

Allele frequencies for 15 autosomal STR loci on U.S. Caucasian, African American, and Hispanic populations.

Peter M Vallone, Richard Schoske, Margaret C Kline, 2003, Journal of forensic sciences.

Capillary electrophoresis of an 11-plex mtDNA coding region SNP single base extension assay for discrimination of the most common Caucasian HV1/HV2 mitotype.

P. Vallone, 2012, Methods in molecular biology.

Allele frequencies for 27 Y-STR loci with U.S. Caucasian, African American, and Hispanic samples.

Amy E. Decker, J. Butler, P. Vallone, 2006, Forensic science international.

Y-SNP typing of U.S. African American and Caucasian samples using allele-specific hybridization and primer extension.

J. Butler, P. Vallone, 2004, Journal of forensic sciences.

The impact of common PCR inhibitors on forensic MPS analysis.

Carolyn R. Steffen, Johannes Hedman, Peter Rådström, 2019, Forensic science international. Genetics.

Sequence-based analysis of stutter at STR loci: Characterization and utility

Michael D. Coble, David L. Duewer, Peter M. Vallone, 2015 .

STRs vs. SNPs: thoughts on the future of forensic DNA testing

Peter M Vallone, Michael D Coble, J. Butler, 2007, Forensic science, medicine, and pathology.

Forensic application of the Affymetrix human mitochondrial resequencing array.

P. Vallone, M. Coble, J. Jakupciak, 2007, Forensic science international. Genetics.

The role of the loop in binding of an actinomycin D analog to hairpins formed by single-stranded DNA.

C. Tung, P. Vallone, A. S. Benight, 2000, Archives of biochemistry and biophysics.

Inhibition mechanisms of hemoglobin, immunoglobulin G, and whole blood in digital and real-time PCR

Carolyn R. Steffen, Johannes Hedman, Peter Rådström, 2018, Analytical and Bioanalytical Chemistry.

Rapid PCR protocols for forensic DNA typing on six thermal cycling platforms

P. Vallone, E. L. Butts, 2014, Electrophoresis.

Demonstration of rapid multiplex PCR amplification involving 16 genetic loci.

J. Butler, P. Vallone, C. Hill, 2008, Forensic science international. Genetics.

A 26plex Autosomal STR Assay to Aid Human Identity Testing * †

J. Butler, P. Vallone, C. Hill, 2009, Journal of forensic sciences.

Melting studies of short DNA hairpins: influence of loop sequence and adjoining base pair identity on hairpin thermodynamic stability.

P. Vallone, A. S. Benight, P M Vallone, 1999, Biopolymers.

Beyond the STRs: A comprehensive view of current forensic DNA markers characterized in the PCR-based DNA profiling standard SRM 2391D

P. Vallone, L. Borsuk, C. Steffen, 2017 .

A multi-dimensional evaluation of the ‘NIST 1032’ sample set across four forensic Y-STR multiplexes

P. Vallone, K. Gettings, L. Borsuk, 2021, Forensic science international. Genetics.

Sequencing of full mitochondrial genomes for NIST population samples

P. Vallone, J. D. Ring, Charla Marshall, 2019 .

The impact of additional Y-STR loci on resolving common haplotypes and closely related individuals.

J. Butler, P. Vallone, A. Decker, 2007, Forensic science international. Genetics.

Sequence-based allelic variations and frequencies for 22 autosomal STR loci in the Lebanese population.

R. Mahfouz, P. Vallone, Susan Walsh, 2023, Forensic science international. Genetics.

Multiplexed Assays for Evaluation of Y-SNP Markers in U.S. Populations | NIST

J. Butler, P. Vallone, 2004 .

High-throughput Y-STR typing of U.S. populations with 27 regions of the Y chromosome using two multiplex PCR assays.

Peter M Vallone, Richard Schoske, Margaret C Kline, 2004, Forensic science international.

Capillary electrophoresis as a tool for optimization of multiplex PCR reactions

Christian M. Ruitberg, J. Butler, P. Vallone, 2001, Fresenius' journal of analytical chemistry.

SNP genotyping using multiplex single base primer extension assays.

P. Vallone, D. Podini, 2009, Methods in molecular biology.

Identification of West Eurasian mitochondrial haplogroups by mtDNA SNP screening: results of the 2006-2007 EDNAP collaborative exercise.

Á. Carracedo, A. Salas, W. Parson, 2008, Forensic science international. Genetics.

An Introductory Overview of Open-Source and Commercial Software Options for the Analysis of Forensic Sequencing Data

P. Vallone, K. Gettings, T. Huszar, 2021, Genes.

Understanding the characteristics of sequence-based single-source DNA profiles.

Peter M Vallone, Lisa A Borsuk, Sarah Riman, 2019, Forensic science international. Genetics.

The Coronavirus Standards Working Group’s roadmap for improved population testing

M. Salit, J. Vandesompele, J. Sninsky, 2022, Nature Biotechnology.

Melting studies of short DNA hairpins containing the universal base 5-nitroindole.

P. Vallone, A. S. Benight, 1999, Nucleic acids research.

Estimation of extraction efficiency by droplet digital PCR

Erica L. Romsos, P. Vallone, 2019 .

Comparison of base composition analysis and Sanger sequencing of mitochondrial DNA for four U.S. population groups.

P. Vallone, T. Hall, M. Coble, 2014, Forensic science international. Genetics.

Mitochondrial DNA typing screens with control region and coding region SNPs.

J. Butler, P. Vallone, Cassandra D. Calloway, 2005, Journal of forensic sciences.

Setting standards and developing technology to aid the human identity testing community

J. Butler, P. Vallone, M. Coble, 2006 .

A Multiplex Primer Extension Assay for Probing 11 SNPs Located in the Mitochondrial Genome

P. Vallone, 2003 .

Examining Discrimination Performance and Likelihood Ratio Values for Two Different Likelihood Ratio Systems Using the Provedit Dataset

P. Vallone, Hariharan Iyer, Sarah Riman, 2021, bioRxiv.

Examining performance and likelihood ratios for two likelihood ratio systems using the PROVEDIt dataset

P. Vallone, Hariharan Iyer, Sarah Riman, 2021, PloS one.

Unleashing novel STRS via characterization of genome in a bottle reference samples

Justin M. Zook, Peter M. Vallone, Katherine Butler Gettings, 2019 .

STRSeq: A catalog of sequence diversity at human identification Short Tandem Repeat loci.

W. Parson, P. Vallone, B. Budowle, 2017, Forensic science international. Genetics.

Are reported likelihood ratios well calibrated?

Jan Hannig, Peter M. Vallone, Hari K. Iyer, 2019 .

Corrigendum to 'U.S. Population Data for 29 Autosomal STR Loci' [Forensic Sci. Int. Genet. 7 (2013) e82-e83].

Peter M Vallone, Michael D Coble, P. Vallone, 2017, Forensic science international. Genetics.

Effective strategies for forensic analysis in the mitochondrial DNA coding region

T. Parsons, P. Vallone, R. Just, 2005, International Journal of Legal Medicine.

D5S2500 is an ambiguously characterized STR: Identification and description of forensic microsatellites in the genomics age.

W Parson, M D Coble, C Phillips, 2016, Forensic science international. Genetics.

Reducing Bias and Quantifying Uncertainty in Fluorescence Produced by PCR

Anthony J. Kearsley, Erica L. Romsos, P. Vallone, 2023, Bulletin of Mathematical Biology.

Developmental validation of the DNAscan™ Rapid DNA Analysis™ instrument and expert system for reference sample processing.

Peter M Vallone, Eugene Tan, Michael Mann, 2016, Forensic science international. Genetics.

Rapid DNA maturity assessment

Erica L. Romsos, P. Vallone, Sanae Lembirick, 2015 .

Developmental validation of the PowerPlex® 18D System, a rapid STR multiplex for analysis of reference samples.

Benjamin E. Krenke, Martin G. Ensenberger, Patricia M. Fulmer, 2013, Forensic science international. Genetics.

NIST validation studies on the 3500 Genetic Analyzer

J. Butler, P. Vallone, D. Duewer, 2011 .

Deep Sequencing and Molecular Characterisation of BK Virus and JC Virus WHO International Reference Materials for Clinical Diagnostic Use

P. Vallone, N. Almond, A. Jenkins, 2023, Viruses.

Rapid production and free distribution of a synthetic RNA material to support SARS-CoV-2 molecular diagnostic testing

Nathan D. Olson, Erica L. Romsos, Stephanie L. Servetas, 2023, Biologicals (Print).

Certification of standard reference material 2365 BK virus DNA quantitative standard

B. Toman, P. Vallone, N. Farkas, 2018 .