A. Shimada

发表

Crystal structure of the C-terminal globular domain of the third paralog of the Archaeoglobus fulgidus oligosaccharyltransferases

S. Matsumoto, A. Shimada, D. Kohda, 2013, BMC Structural Biology.

LPT1 Encodes a Membrane-bound O-Acyltransferase Involved in the Acylation of Lysophospholipids in the Yeast Saccharomyces cerevisiae*

A. Shimada, H. Miyagawa, H. Kumagai, 2007, Journal of Biological Chemistry.

Structural Basis for Double-Sieve Discrimination of L-Valine from L-Isoleucine and L-Threonine by the Complex of tRNAVal and Valyl-tRNA Synthetase

Shigeyuki Yokoyama, Osamu Nureki, O. Nureki, 2000, Cell.

Trimethylguanosine synthase 1 (Tgs1) is involved in Swi6/HP1‐independent siRNA production and establishment of heterochromatin in fission yeast

A. Shimada, Y. Murakami, S. Takahata, 2021, Genes to cells : devoted to molecular & cellular mechanisms.

Mapping of the basic amino‐acid residues responsible for tubulation and cellular protrusion by the EFC/F‐BAR domain of pacsin2/Syndapin II

T. Umehara, S. Yokoyama, A. Shimada, 2010, FEBS letters.

Regulation of ectopic heterochromatin-mediated epigenetic diversification by the JmjC family protein Epe1

Yutaka Suzuki, Y. Hiraoka, Chie Mori, 2019, PLoS genetics.

Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study.

F. Tama, O. Miyashita, A. Shimada, 2020, Biochimica et biophysica acta. General subjects.

Loss of RanGEF/Pim1 activity abolishes the orchestration of Ran‐mediated mitotic cellular events in S. pombe

A. Shimada, T. Nishimoto, H. Nishitani, 2005, Genes to cells : devoted to molecular & cellular mechanisms.

Curved EFC/F-BAR-Domain Dimers Are Joined End to End into a Filament for Membrane Invagination in Endocytosis

Sumio Sugano, Masaki Yamamoto, Shigeyuki Yokoyama, 2007, Cell.

PCR-based site-directed mutagenesis.

A. Shimada, 1996, Methods in molecular biology.

Effects of targeting signal mutations in a mitochondrial presequence on the spatial distribution of the conformational ensemble in the binding site of Tom20

A. Shimada, D. Kohda, N. Maita, 2022, Protein science : a publication of the Protein Society.

Ca2+‐induced structural changes and intramolecular interactions in N‐terminal region of diacylglycerol kinase alpha

A. Shimada, T. Ueda, Daisuke Takahashi, 2022, Protein science : a publication of the Protein Society.

Small RNA Function in Plants: From Chromatin to the Next Generation.

R. Martienssen, A. Shimada, F. Borges, 2020, Cold Spring Harbor symposia on quantitative biology.

Enzyme structure with two catalytic sites for double-sieve selection of substrate.

D G Vassylyev, O. Nureki, S. Yokoyama, 1998, Science.

THE PRESERVATION AND UTILIZATION OF WILD POPULATIONS OF THE MEDAKA ORYZIAS LATIPES

A. Shimada, A. Shima, K. Naruse, 1985 .

The core FH2 domain of diaphanous-related formins is an elongated actin binding protein that inhibits polymerization.

I. Vetter, A. Wittinghofer, S. Narumiya, 2004, Molecular cell.

Mechanism of molecular interactions for tRNA(Val) recognition by valyl-tRNA synthetase.

Shigeyuki Yokoyama, Osamu Nureki, O. Nureki, 2003, RNA.

Phosphorylation of Swi6/HP1 regulates transcriptional gene silencing at heterochromatin.

A. Shimada, T. Urano, J. Nakayama, 2009, Genes & development.

Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7

A. Kitao, A. Shimada, D. Kohda, 2019, Nature Communications.

TRPV4 channel activity is modulated by direct interaction of the ankyrin domain to PI(4,5)P2

A. Kitao, Y. Mori, A. Shimada, 2014, Nature Communications.

The maturation of reticulocytes. I. Following introduction of reticulocytes into polycythemic and normocythemic animals.

A. Shimada, 1975, Acta medica Okayama.

The maturation of reticulocytes. II. Life-span of red cells originating from stress reticulocytes.

A. Shimada, A Shimada, 1975, Acta medica Okayama.

Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation

S. Matsumoto, A. Shimada, D. Kohda, 2013, Proceedings of the National Academy of Sciences.

Structural basis for anticodon recognition by discriminating glutamyl-tRNA synthetase

Shigeyuki Yokoyama, Osamu Nureki, O. Nureki, 2001, Nature Structural Biology.

Actin filament bundling and different nucleating effects of mouse Diaphanous-related formin FH2 domains on actin/ADF and actin/cofilin complexes.

H. Mannherz, A. Wittinghofer, G. Machaidze, 2010, Journal of molecular biology.

Dynamic regulation of heterochromatin function via phosphorylation of HP1-family proteins

A. Shimada, Y. Murakami, 2010, Epigenetics.

CHLOROPLAST UNUSUAL POSITIONING 1 is a new type of actin nucleation factor in plants

K. Hirose, A. Shimada, D. Kohda, 2020, bioRxiv.

Structural basis for the recognition of two consecutive mutually interacting DPF motifs by the SGIP1 μ homology domain

A. Shimada, D. Kohda, A. Yamaguchi, 2016, Scientific Reports.

Structural and mutational studies of the recognition of the arginine tRNA-specific major identity element, A20, by arginyl-tRNA synthetase

O. Nureki, S. Yokoyama, A. Shimada, 2001, Proceedings of the National Academy of Sciences of the United States of America.

Tethering an N-Glycosylation Sequon-Containing Peptide Creates a Catalytically Competent Oligosaccharyltransferase Complex.

S. Matsumoto, A. Shimada, D. Kohda, 2017, Biochemistry.

Crucial Role of the HIGH-loop Lysine for the Catalytic Activity of Arginyl-tRNA Synthetase*

O. Nureki, S. Yokoyama, D. Moras, 2001, The Journal of Biological Chemistry.

Retrotransposon addiction promotes centromere function via epigenetically activated small RNAs

T. Kakutani, A. Shimada, Jonathan Cahn, 2023, bioRxiv.

The 2.0 A crystal structure of Thermus thermophilus methionyl-tRNA synthetase reveals two RNA-binding modules.

R Giegé, B Lorber, O. Nureki, 2000, Structure.

Functional Structures of Class-I Aminoacyl-tRNA Synthetases

O. Nureki, S. Yokoyama, D. Moras, 1999 .