C. Raley

发表

Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads

Qiang Sun, Bin Zhou, Xin Zheng, 2016, BioData Mining.

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

Brad T. Sherman, Robert M. Stephens, Christina A. Cuomo, 2016, Nature Communications.

PacBio library preparation using blunt-end adapter ligation produces significant artefactual fusion DNA sequences

M. Mehta, C. Raley, Bao Tran, 2018, bioRxiv.

Towards Better Precision Medicine: PacBio Single-Molecule Long Reads Resolve the Interpretation of HIV Drug Resistant Mutation Profiles at Explicit Quasispecies (Haplotype) Level

Liang Ma, Castle Raley, Brad T. Sherman, 2015, Journal of data mining in genomics & proteomics.

A Benchmark Study on Error Assessment and Quality Control of CCS Reads Derived from the PacBio RS.

Robert Stephens, Qiang Sun, Xin Zheng, 2013, Journal of data mining in genomics & proteomics.

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust

Marisa E. Miller, Jennifer M. Taylor, C. Raley, 2018, mBio.

De Novo Assembly and Phasing of Dikaryotic Genomes from Two Isolates of Puccinia coronata f. sp. avenae, the Causal Agent of Oat Crown Rust

Marisa E. Miller, Jennifer M. Taylor, C. Raley, 2017, mBio.

Emergence of the Ug99 lineage of the wheat stem rust pathogen through somatic hybridisation

Marisa E. Miller, K. Silverstein, C. Raley, 2019, Nature Communications.

Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors

Michele D. Sobolewski, Wei-Shau Hu, S. Hughes, 2019, Proceedings of the National Academy of Sciences.

Genome Assembly and Annotation of the Trichoplusia ni Tni-FNL Insect Cell Line Enabled by Long-Read Technologies

R. Stephens, D. Esposito, J. Shetty, 2019, Genes.

Preparation of next-generation DNA sequencing libraries from ultra-low amounts of input DNA: Application to single-molecule, real-time (SMRT) sequencing on the Pacific Biosciences RS II

J. Korlach, C. Heiner, R. Stephens, 2014, bioRxiv.

Targeted Gene Addition to a Safe Harbor locus in human CD34+ Hematopoietic Stem Cells for Correction of X-linked Chronic Granulomatous Disease

Castle Raley, Pei-Qi Liu, Fyodor D Urnov, 2016, Nature Biotechnology.

Expression of LIM domain-binding 3 (LDB3), a striated muscle Z-band alternatively spliced PDZ-motif protein in the nervous system

C. Raley, Bao Tran, A. Mankodi, 2023, Scientific Reports.

Distinguishing highly similar gene isoforms with a clustering-based bioinformatics analysis of PacBio single-molecule long reads

Robert M. Stephens, B. Sherman, W. Lau, 2016, BioData Mining.

Genome analysis of three Pneumocystis species reveals adaptation mechanisms to life exclusively in mammalian hosts

Brad T. Sherman, Robert M. Stephens, Christina A. Cuomo, 2016, Nature Communications.

The Helicobacter pylori Genome Project: insights into H. pylori population structure from analysis of a worldwide collection of complete genomes

James G. Fox, D. Falush, C. Abnet, 2023, Nature communications.

Hospital antimicrobial stewardship: profiling the oral microbiome after exposure to COVID-19 and antibiotics

C. Raley, Keith A. Crandall, A. Rahnavard, 2024, Frontiers in microbiology.