C. Cuomo

Christina A. Cuomo, Brendan R. Jackson, B. Jackson, 2017, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Landscape of gene expression variation of natural isolates of Cryptococcus neoformans in response to biologically relevant stresses

Christina A. Cuomo, J. Perfect, C. Cuomo, 2019, Microbial genomics.

Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase

J. Pritchard, J. Diedrich, J. Yates, 2019, Cell.

RNAi is a critical determinant of centromere evolution in closely related fungi

Christina A. Cuomo, J. Heitman, Terrance P. Shea, 2018, Proceedings of the National Academy of Sciences.

Comparative Genome Analysis of Trichophyton rubrum and Related Dermatophytes Reveals Candidate Genes Involved in Infection

Christina A. Cuomo, T. C. White, David I Heiman, 2012, mBio.

Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans

Christina A. Cuomo, D. Thompson, Toni M. Delorey, 2019, Nature Communications.

One fungus, one name: defining the genus Fusarium in a scientifically robust way that preserves longstanding use.

A. Logrieco, K. Hammond-Kosack, D. Geiser, 2013, Phytopathology.

Zinc Cluster Transcription Factors Alter Virulence in Candida albicans

Christina A. Cuomo, Rhys A. Farrer, D. Thompson, 2016, Genetics.

Comparative Genomics Integrated with Association Analysis Identifies Candidate Effector Genes Corresponding to Lr20 in Phenotype-Paired Puccinia triticina Isolates from Australia

Christina A. Cuomo, C. Cuomo, Sharadha Sakthikumar, 2017, Front. Plant Sci..

Pas de deux: An Intricate Dance of Anther Smut and Its Host

Christina A. Cuomo, Zehua Chen, C. Cuomo, 2017, G3: Genes, Genomes, Genetics.

A novel rRNA hybridization-based approach to rapid, accurate Candida identification directly from blood culture

R. Bhattacharyya, C. Cuomo, Poppy C. S. Sephton-Clark, 2022, bioRxiv.

Tracking a Global Threat: a New Genotyping Method for Candida auris

Christina A. Cuomo, C. Cuomo, A. Alanio, 2020, mBio.

Genome Sequence of Spizellomyces punctatus

Q. Zeng, Zehua Chen, C. Nusbaum, 2016, Genome Announcements.

Hsf1 and Hsp90 orchestrate temperature-dependent global transcriptional remodelling and chromatin architecture in Candida albicans

Christina A. Cuomo, Rhys A. Farrer, C. Cuomo, 2016, Nature Communications.

whole-genome assembly of a wild type yeast isolate De novo using nanopore sequencing

C. Cuomo, Hayan Lee, 2017 .

Application of an optimized annotation pipeline to the Cryptococcus deuterogattii genome reveals dynamic primary metabolic gene clusters and genomic impact of RNAi loss

Christina A. Cuomo, J. Heitman, C. Cuomo, 2020, bioRxiv.

Evolutionary Persistence of DNA Methylation for Millions of Years after Ancient Loss of a De Novo Methyltransferase

Christina A. Cuomo, J. Pritchard, J. Diedrich, 2020, Cell.

Intracellular Action of a Secreted Peptide Required for Fungal Virulence.

Christina A. Cuomo, J. Diedrich, J. Yates, 2016, Cell host & microbe.

Degeneration of the Nonrecombining Regions in the Mating-Type Chromosomes of the Anther-Smut Fungi

Christina A. Cuomo, Zehua Chen, J. Poulain, 2014, Molecular biology and evolution.

LINKAGE TO THE MATING‐TYPE LOCUS ACROSS THE GENUS MICROBOTRYUM: INSIGHTS INTO NONRECOMBINING CHROMOSOMES

J. Poulain, P. Wincker, T. Giraud, 2012, Evolution; international journal of organic evolution.

Rapid genome sequencing for outbreak analysis of the emerging human fungal pathogen Candida auris

Christina A. Cuomo, Rhys A. Farrer, D. Aanensen, 2017, bioRxiv.

kb 19-gene dataset resolves a monophyletic Fusarium that includes the 2 Fusarium solani Species Complex 3 4

Christina A. Cuomo, S. Ranque, J. Stajich, 2020 .

Genomic insights into the host specific adaptation of the Pneumocystis genus and emergence of the human pathogen Pneumocystis jirovecii

Christina A. Cuomo, J. Stajich, J. Kovacs, 2020, bioRxiv.

Use of Multiple Sequencing Technologies To Produce a High-Quality Genome of the Fungus Pseudogymnoascus destructans, the Causative Agent of Bat White-Nose Syndrome

R. Sebra, J. Foster, C. Cuomo, 2016, Genome Announcements.

Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi

Christina A. Cuomo, C. Cuomo, J. McEwen, 2017, Scientific Reports.

Genomic basis of multidrug-resistance, mating, and virulence in Candida auris and related emerging species

Rhys A. Farrer, C. Cuomo, E. Berkow, 2018, bioRxiv.

Whole genome sequence of the heterozygous clinical isolate Candida 1 krusei 81-B-5 2 3

Bo Yang, Terrance P. Shea, C. Cuomo, 2017 .

Complete Genome Sequences from Three Genetically Distinct Strains Reveal High Intraspecies Genetic Diversity in the Microsporidian Encephalitozoon cuniculi

Christina A. Cuomo, David I Heiman, David I. Heiman, 2013, Eukaryotic Cell.

Cryptococcus neoformans Recovered From Olive Trees (Olea europaea) in Turkey Reveal Allopatry With African and South American Lineages

J. Heitman, S. Seyedmousavi, C. Cuomo, 2019, Frontiers in cellular and infection microbiology.

Diploid-dominant life cycles characterize the early evolution of Fungi

Christina A. Cuomo, Nicolas E. Buchler, J. Stajich, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies

J. Stajich, B. Lang, C. Cuomo, 2022, iScience.

Author Correction: Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris

Rhys A. Farrer, D. Aanensen, C. Cuomo, 2018, Emerging Microbes & Infections.

Advances in Cryptococcus genomics: insights into the evolution of pathogenesis

Christina A. Cuomo, C. Cuomo, C. Desjardins, 2018, Memorias do Instituto Oswaldo Cruz.

Identification of the Mating-Type (MAT) Locus That Controls Sexual Reproduction of Blastomyces dermatitidis

Christina A. Cuomo, J. Heitman, C. Cuomo, 2012, Eukaryotic Cell.

The Case for Adopting the “Species Complex” Nomenclature for the Etiologic Agents of Cryptococcosis

Christina A. Cuomo, A. Casadevall, J. Perfect, 2017, mSphere.

The importance of antimicrobial resistance in medical mycology

Christina A. Cuomo, J. Berman, C. Cuomo, 2022, Nature Communications.

First Patient-to-Patient Intrahospital Transmission of Clade I Candida auris in France Revealed after a Two-Month Incubation Period

C. Cuomo, A. Alanio, F. Dépret, 2022, Microbiology spectrum.

Genomic Variation across a Clinical Cryptococcus Population Linked to Disease Outcome

Christina A. Cuomo, J. Perfect, C. Cuomo, 2021, bioRxiv.

Transcriptional analysis of mating and pre-infection stages of the anther smut, Microbotryum lychnidis-dioicae.

Christina A. Cuomo, Zehua Chen, C. Cuomo, 2017, Microbiology.

The future of fungi: threats and opportunities

Christina A. Cuomo, J. Heitman, J. Segre, 2022, G3.

Human blastomycosis in South Africa caused by Blastomyces percursus and 1 Blastomyces africanus sp . nov . , 1967 – 2014 2 3

Christina A. Cuomo, C. Cuomo, N. Govender, 2020 .

Identification of Candida auris by Use of the Updated Vitek 2 Yeast Identification System, Version 8.01: a Multilaboratory Evaluation Study

C. Cuomo, E. Berkow, S. Lockhart, 2019, Journal of Clinical Microbiology.

TEXT S1 Materials and Methods text and supplemental figures. Download

René L. Warren, Sohrab P. Shah, James E. Galagan, 2011 .

Lower prevalence but similar fitness in a parasitic fungus at higher radiation levels near Chernobyl

A. Møller, T. Giraud, C. Cuomo, 2016, Molecular ecology.

Understanding the Emergence of Multidrug-Resistant Candida: Using Whole-Genome Sequencing to Describe the Population Structure of Candida haemulonii Species Complex

Brendan R. Jackson, B. Jackson, C. Cuomo, 2020, Frontiers in Genetics.

Genome Sequence of the Black Yeast Exophiala lecanii-corni

C. Cuomo, Z. Schultzhaus, Zheng Wang, 2019, Microbiology Resource Announcements.

Fungi on the skin: dermatophytes and Malassezia.

T. C. White, C. Cuomo, A. Scheynius, 2014, Cold Spring Harbor perspectives in medicine.

Threats Posed by the Fungal Kingdom to Humans, Wildlife, and Agriculture

Christina A. Cuomo, J. Heitman, A. Casadevall, 2020, mBio.

Human Blastomycosis in South Africa Caused by Blastomyces percursus and Blastomyces emzantsi sp. nov., 1967 to 2014

Christina A. Cuomo, C. Cuomo, S. de Hoog, 2020, Journal of Clinical Microbiology.

Novel taxa of thermally dimorphic systemic pathogens in the Ajellomycetaceae (Onygenales)

Christina A. Cuomo, C. Cuomo, J. McEwen, 2017, Mycoses.

Amoeba Predation of Cryptococcus neoformans Results in Pleiotropic Changes to Traits Associated with Virulence

Christina A. Cuomo, A. Casadevall, J. Perfect, 2020, mBio.

Genomic diversity of the human pathogen Paracoccidioides across the South American continent.

Christina A. Cuomo, C. Cuomo, B. Barker, 2020, Fungal genetics and biology : FG & B.

50 Years of Emmonsia Disease in Humans: The Dramatic Emergence of a Cluster of Novel Fungal Pathogens

Christina A. Cuomo, C. Cuomo, A. Stchigel, 2015, PLoS pathogens.

Genome Diversity, Recombination, and Virulence across the Major Lineages of Paracoccidioides

Christina A. Cuomo, Rhys A. Farrer, S. Sykes, 2016, mSphere.

SREB, a GATA Transcription Factor That Directs Disparate Fates in Blastomyces dermatitidis Including Morphogenesis and Siderophore Biosynthesis

G. Suen, C. Cuomo, R. May, 2010, PLoS pathogens.

Blastomycosis in Africa and the Middle East: A Comprehensive Review of Reported Cases and Reanalysis of Historical Isolates Based on Molecular Data

Christina A. Cuomo, C. Cuomo, J. McEwen, 2020, Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.

Experimental Evolution Identifies Adaptive Aneuploidy as a Mechanism of Fluconazole Resistance in Candida auris

Christina A. Cuomo, Guanghua Huang, C. Cuomo, 2020, Antimicrobial Agents and Chemotherapy.

Comparative Population Genomics Analysis of the Mammalian Fungal Pathogen Pneumocystis

R. Lempicki, Xilong Deng, M. Pagni, 2018, mBio.

Emergomyces: The global rise of new dimorphic fungal pathogens

C. Cuomo, S. de Hoog, A. Botha, 2019, PLoS pathogens.

A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands

Christina A. Cuomo, Michael J. Davis, Rhys A. Farrer, 2019, mBio.

The Dynamic Genome and Transcriptome of the Human Fungal Pathogen Blastomyces and Close Relative Emmonsia

Christina A. Cuomo, Q. Zeng, Zehua Chen, 2015, PLoS genetics.

Isolation of Blastomyces dermatitidis yeast from lung tissue during murine infection for in vivo transcriptional profiling.

C. Cuomo, M. Wüthrich, B. Klein, 2013, Fungal genetics and biology : FG & B.

Global analysis of mutations driving microevolution of a heterozygous diploid fungal pathogen

Richard J. Bennett, Christina A. Cuomo, Rhys A. Farrer, 2018, Proceedings of the National Academy of Sciences.

A Global Analysis of Mutations Accompanying Microevolution in the Heterozygous Diploid Pathogen Candida albicans

Christina A. Cuomo, Rhys A. Farrer, C. Cuomo, 2018, bioRxiv.

Human and murine Cryptococcus neoformans infection selects for common genomic changes in an environmental isolate

Christina A. Cuomo, A. Casadevall, C. Cuomo, 2022, bioRxiv.

Genomic epidemiology of a Cryptococcus neoformans case cluster in Glasgow, Scotland, 2018

Rhys A. Farrer, C. Cuomo, M. Fisher, 2021, Microbial genomics.

Chromosome-Level Genome Assembly of a Human Fungal Pathogen Reveals Synteny among Geographically Distinct Species

Terrance P. Shea, T. Michael, W. Goldman, 2021, bioRxiv.

Draft Genome Sequence of the Cellulolytic Fungus Chaetomium globosum

M. Grabherr, B. Birren, C. Cuomo, 2015, Genome Announcements.

Whole-Genome Analysis Illustrates Global Clonal Population Structure of the Ubiquitous Dermatophyte Pathogen Trichophyton rubrum

Christina A. Cuomo, T. C. White, G. F. Persinoti, 2018, Genetics.

Genomic characterization of recurrent mold infections in thoracic transplant recipients

Christina A. Cuomo, J. Perfect, B. Alexander, 2018, Transplant infectious disease : an official journal of the Transplantation Society.

Genome Sequence of the Pathogenic Fungus Sporothrix schenckii (ATCC 58251)

Q. Zeng, B. Birren, S. Young, 2014, Genome Announcements.

Paracoccidioides spp. catalases and their role in antioxidant defense against host defense responses.

Christina A. Cuomo, C. Cuomo, J. McEwen, 2017, Fungal genetics and biology : FG & B.

Phenotypic Characterization and Comparative Genomics of the Melanin-Producing Yeast Exophiala lecanii-corni Reveals a Distinct Stress Tolerance Profile and Reduced Ribosomal Genetic Content

C. Cuomo, W. J. Hervey, Hashanthi K. Abeyratne-Perera, 2021, Journal of fungi.

Comparative Genomics Yields Insights into Niche Adaptation of Plant Vascular Wilt Pathogens

Christina A. Cuomo, David I Heiman, Q. Zeng, 2011, PLoS pathogens.

Genomic Understanding of an Infectious Brain Disease from the Desert

Christina A. Cuomo, C. Cuomo, Abdalla Ahmed, 2018, G3: Genes, Genomes, Genetics.

Adaptation of the Black Yeast Wangiella dermatitidis to Ionizing Radiation: Molecular and Cellular Mechanisms

Z. Wang, C. Cuomo, Kelly L. Robertson, 2012, PloS one.

Phylogenomic analysis of a 55.1 kb 19-gene dataset resolves a monophyletic Fusarium that includes the Fusarium solani Species Complex.

Christina A. Cuomo, S. Ranque, J. Stajich, 2020, Phytopathology.

Genome Sequence of the Microsporidian Species Nematocida sp1 Strain ERTm6 (ATCC PRA-372)

M. Priest, S. Young, C. Cuomo, 2014, Genome Announcements.

Tracing the Evolutionary History and Global Expansion of Candida auris Using Population Genomic Analyses

Christina A. Cuomo, A. Bharat, C. Cuomo, 2020, mBio.

Genomic epidemiology of the UK outbreak of the emerging human fungal pathogen Candida auris

Christina A. Cuomo, Rhys A. Farrer, D. Aanensen, 2018, Emerging Microbes & Infections.

In vivo emergence of high-level resistance during treatment reveals the first identified mechanism of amphotericin B resistance in Candida auris.

S. Kelly, C. Cuomo, K. Barker, 2021, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Cryptococcus neoformans Recovered From Olive Trees (Olea europaea) in Turkey Reveal Allopatry With African and South American Lineages

J. Heitman, S. Seyedmousavi, C. Cuomo, 2019, bioRxiv.

Complete Genome Sequences for Two Talaromyces marneffei Clinical Isolates from Northern and Southern Vietnam

P. Ashton, J. Perfect, Terrance P. Shea, 2020, Microbiology Resource Announcements.

Correction: Ubiquitin-Mediated Response to Microsporidia and Virus Infection in C. elegans

Scott A. Rifkin, Christina A. Cuomo, S. Rifkin, 2014, PLoS Pathogens.

Ubiquitin-Mediated Response to Microsporidia and Virus Infection in C. elegans

Scott A. Rifkin, Christina A. Cuomo, S. Rifkin, 2014, PLoS pathogens.

species genetic diversity in the microsporidian Encephalitozoon cuniculi 2

Christina A. Cuomo, David I Heiman, David I. Heiman, 2013 .

Microsporidian Encephalitozoon cuniculi Intraspecies Genetic Diversity in the Genetically Distinct Strains Reveal High Complete Genome Sequences from Three

Christina A. Cuomo, S. Young, C. Cuomo, 2013 .

Contrasting host–pathogen interactions and genome evolution in two generalist and specialist microsporidian pathogens of mosquitoes

Christina A. Cuomo, David I Heiman, Q. Zeng, 2015, Nature Communications.

Genomics of Sclerotinia sclerotiorum

C. Cuomo, M. Dickman, L. Kohn, 2014 .

CandidaDB: a multi-genome database for Candida species and related Saccharomycotina

Tristan Rossignol, Pierre Lechat, Christina Cuomo, 2007, Nucleic Acids Res..

Genetic Analysis of Candida auris Implicates Hsp90 in Morphogenesis and Azole Tolerance and Cdr1 in Azole Resistance

C. Cuomo, L. Cowen, K. H. Wong, 2019, mBio.

Obligate sexual reproduction of a homothallic fungus closely related to the Cryptococcus pathogenic species complex

Christina A. Cuomo, J. Heitman, Terrance P. Shea, 2022, bioRxiv.

Clade-specific chromosomal rearrangements and loss of subtelomeric adhesins in Candida auris

Christina A. Cuomo, Terrance P. Shea, C. Cuomo, 2021, Genetics.

Chromosomal rearrangements and loss of subtelomeric adhesins linked to clade-specific phenotypes in Candida auris

Terrance P. Shea, C. Cuomo, D. Batra, 2019, bioRxiv.

DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage

David C. Schwartz, Jane Loveland, Eric S. Lander, 2006, Nature.

Comparative genomics of white and opaque cell states supports an epigenetic mechanism of phenotypic switching in Candida albicans

Christina A. Cuomo, C. Cuomo, R. Bennett, 2021, G3.

Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single, Candida albicans infected macrophages

Christina A. Cuomo, D. Thompson, Toni M. Delorey, 2018, bioRxiv.

Finding a Missing Gene: EFG1 Regulates Morphogenesis in Candida tropicalis

Allison M. Porman, C. Cuomo, R. Bennett, 2015, G3: Genes, Genomes, Genetics.

Genomic insights into the host specific adaptation of the Pneumocystis genus

Christina A. Cuomo, J. Stajich, J. Kovacs, 2021, Communications biology.

Chaos of Rearrangements in the Mating-Type Chromosomes of the Anther-Smut Fungus Microbotryum lychnidis-dioicae

Jérôme Gouzy, Christina A Cuomo, Christina A. Cuomo, 2015, Genetics.

Whole Genome Sequence of the Heterozygous Clinical Isolate Candida krusei 81-B-5

Bo Yang, Terrance P. Shea, C. Cuomo, 2017, G3: Genes, Genomes, Genetics.

Harnessing Whole Genome Sequencing in Medical Mycology

Christina A. Cuomo, C. Cuomo, 2017, Current Fungal Infection Reports.

Genome Report : Whole genome sequence of the heterozygous clinical isolate Candida 1 krusei

Bo Yang, Terrance P. Shea, C. Cuomo, 2017 .

Genomics of the fungal kingdom: Insights into eukaryotic biology

James E. Galagan, Li-Jun Ma, Matthew R. Henn, 2005 .

Best practices on the differential expression analysis of multi-species RNA-seq

Christina A. Cuomo, D. Rasko, J. Livny, 2021, Genome Biology.

The evolution of drug resistance in clinical isolates of Candida albicans

T. C. White, D. Thompson, A. Regev, 2015, eLife.

Genome Sequence for Candida albicans Clinical Oral Isolate 529L

Q. Zeng, A. Mitchell, S. Gujja, 2019, Microbiology Resource Announcements.

Comparative proteomics of extracellular proteins in vitro and in planta from the pathogenic fungus Fusarium graminearum

C. Cuomo, J. Walton, Neil D. Adhikari, 2007, Proteomics.

The molecular and genetic basis of antifungal resistance in the emerging fungal pathogen Candida auris

Christina A. Cuomo, C. Cuomo, J. Rybak, 2022, Current opinion in microbiology.

Genome-Wide Analysis of Experimentally Evolved Candida auris Reveals Multiple Novel Mechanisms of Multidrug Resistance

Christina A. Cuomo, C. Cuomo, P. van Dijck, 2020, mBio.

Sex and parasites: genomic and transcriptomic analysis of Microbotryum lychnidis-dioicae, the biotrophic and plant-castrating anther smut fungus

Q. Zeng, Zehua Chen, B. Henrissat, 2015, BMC Genomics.

Analysis of the Genome and Transcriptome of Cryptococcus neoformans var. grubii Reveals Complex RNA Expression and Microevolution Leading to Virulence Attenuation

Jacqueline E. Schein, Ian A. Wood, Tristan Rossignol, 2014, PLoS genetics.

Fungal genome and mating system transitions facilitated by chromosomal translocations involving intercentromeric recombination

Christina A. Cuomo, J. Heitman, P. Wincker, 2017, PLoS biology.

Genomic innovations linked to infection strategies across emerging pathogenic chytrid fungi

Christina A. Cuomo, Rhys A. Farrer, A. Abouelleil, 2017, Nature Communications.

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

Christina A. Cuomo, Rhys A. Farrer, J. Heitman, 2015, mBio.

Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii

Christina A. Cuomo, Rhys A. Farrer, J. Heitman, 2015 .

Titan cells formation in Cryptococcus neoformans is finely tuned by environmental conditions and modulated by positive and negative genetic regulators

Christina A. Cuomo, A. Casadevall, J. Perfect, 2017, bioRxiv.

Diversity, multifaceted evolution, and facultative saprotrophism in the European Batrachochytrium salamandrivorans epidemic

Christina A. Cuomo, Terrance P. Shea, C. Cuomo, 2021, Nature Communications.

The breakpoint region of the most common isochromosome, i(17q), in human neoplasia is characterized by a complex genomic architecture with large, palindromic, low-copy repeats.

Christina A. Cuomo, C. Nusbaum, P. Stankiewicz, 2004, American journal of human genetics.

Gene Expression of Diverse Cryptococcus Isolates during Infection of the Human Central Nervous System

Christina A. Cuomo, J. Perfect, C. Cuomo, 2021, mBio.

Genomic insights into multidrug-resistance, mating and virulence in Candida auris and related emerging species

Christina A. Cuomo, Rhys A. Farrer, C. Cuomo, 2018, Nature Communications.

Rch1, a protein that specifically interacts with the RAG-1 recombination-activating protein.

Christina A. Cuomo, R. Brent, C. Cuomo, 1994, Proceedings of the National Academy of Sciences of the United States of America.

Host-pathogen transcriptomics of macrophages, Mucorales and their endosymbionts: a polymicrobial pas de trois

Christina A. Cuomo, C. Cuomo, Kerstin Voelz, 2019 .

Pathways of Pathogenicity: Transcriptional Stages of Germination in the Fatal Fungal Pathogen Rhizopus delemar

Christina A. Cuomo, C. Cuomo, Kerstin Voelz, 2018, mSphere.

Using transcription of six Puccinia triticina races to identify the effective secretome during infection of wheat

Christina A. Cuomo, C. Cuomo, Shichen Wang, 2014, Front. Plant Sci..

Analysis of a Food-Borne Fungal Pathogen Outbreak: Virulence and Genome of a Mucor circinelloides Isolate from Yogurt

J. Heitman, P. Mieczkowski, S. Sykes, 2014, mBio.

Analysis of a Food-Borne Fungal Pathogen Outbreak: Virulence and Genome of a Mucor circinelloides Isolate from Yogurt

J. Heitman, P. Mieczkowski, S. Sykes, 2014 .

DNA sequence and analysis of human chromosome 8

Stephen C. J. Parker, Sinead B. O'Leary, Christina A. Cuomo, 2006, Nature.

Analysis of the DNA sequence and duplication history of human chromosome 15

Sinead B. O'Leary, Christina A. Cuomo, Jean L. Chang, 2006, Nature.

Epigenetic maintenance of DNA methylation after evolutionary loss of the de novo methyltransferase

H. Madhani, C. Cuomo, J. Burke, 2017 .

Novel, panzootic and hybrid genotypes of amphibian chytridiomycosis associated with the bullfrog trade

P. Daszak, C. Cuomo, L. F. Toledo, 2012, Molecular ecology.

First Patient-to-Patient Intrahospital Transmission of Clade I Candida auris in France Revealed after a Two-Month Incubation Period

C. Cuomo, A. Alanio, F. Dépret, 2022, Microbiology spectrum.

Highly Recombinant VGII Cryptococcus gattii Population Develops Clonal Outbreak Clusters through both Sexual Macroevolution and Asexual Microevolution

Christina A. Cuomo, J. Heitman, P. Mieczkowski, 2014, mBio.

Analysis of regions of RAG-2 important for V(D)J recombination.

C. Cuomo, M. Oettinger, M A Oettinger, 1994, Nucleic acids research.

Future-Proofing Your Microbiology Resource Announcements Genome Assembly for Reproducibility and Clarity

David A Baltrus, Christina A Cuomo, John J Dennehy, 2019, Microbiology Resource Announcements.

DNA sequence and analysis of human chromosome 18

Sinead B. O'Leary, Christina A. Cuomo, Jean L. Chang, 2005, Nature.

Dissecting the first phased dikaryotic genomes of the wheat rust pathogen Puccinia triticina reveals the mechanisms of somatic exchange in nature

Christina A. Cuomo, C. Cuomo, R. Park, 2019, bioRxiv.

Genome analysis reveals evolutionary mechanisms of adaptation in systemic dimorphic fungi

C. Cuomo, J. McEwen, J. Muñoz, 2017, bioRxiv.

Tracing Genetic Exchange and Biogeography of Cryptococcus neoformans var. grubii at the Global Population Level

Christina A. Cuomo, J. Heitman, D. Lawson, 2017, Genetics.

Population genomics of Cryptococcus neoformans var. grubii reveals new biogeographic relationships and finely maps hybridization

Christina A. Cuomo, J. Heitman, D. Lawson, 2017, bioRxiv.

Genome Update of the Dimorphic Human Pathogenic Fungi Causing Paracoccidioidomycosis

Christina A. Cuomo, Q. Zeng, M. Priest, 2014, PLoS neglected tropical diseases.

Microevolutionary traits and comparative population genomics of the emerging pathogenic fungus Cryptococcus gattii

Christina A. Cuomo, Rhys A. Farrer, C. Cuomo, 2016, Philosophical Transactions of the Royal Society B: Biological Sciences.

Antagonistic paralogs control a switch between growth and pathogen resistance in C. elegans

M. Barkoulas, C. Cuomo, E. Troemel, 2018, bioRxiv.

EFSA statement on the requirements for whole genome sequence analysis of microorganisms intentionally used in the food chain

P. Ashton, A. Chesson, C. Cuomo, 2021, EFSA journal. European Food Safety Authority.

Coordinated host-pathogen transcriptional dynamics revealed using sorted subpopulations and single macrophages infected with Candida albicans

Toni M. Delorey, C. Cuomo, J. Muñoz, 2019, Nature Communications.

Whole-genome sequencing of multiple isolates of Puccinia triticina reveals asexual lineages evolving by recurrent mutations

Christina A. Cuomo, C. Cuomo, Sharadha Sakthikumar, 2020, bioRxiv.

Comparative genomics of Australian isolates of the wheat stem rust pathogen Puccinia graminis f. sp. tritici reveals extensive polymorphism in candidate effector genes

Christina A. Cuomo, C. Cuomo, P. Dodds, 2015, Front. Plant Sci..

Comparative Analysis Highlights Variable Genome Content of Wheat Rusts and Divergence of the Mating Loci

Christina A. Cuomo, J. Levin, X. Adiconis, 2016, G3: Genes, Genomes, Genetics.

Inter-species geographic signatures for tracing horizontal gene transfer and long-term persistence of carbapenem resistance

Christina A. Cuomo, R. Bhattacharyya, Terrance P. Shea, 2021, Genome Medicine.

In vivo emergence of high-level resistance during treatment reveals the first identified mechanism of amphotericin B resistance in Candida auris

Christina A. Cuomo, S. Kelly, C. Cuomo, 2021, bioRxiv.

Mutations in TAC1B: a Novel Genetic Determinant of Clinical Fluconazole Resistance in Candida auris

Christina A. Cuomo, T. C. White, S. Kelly, 2020, mBio.

Corrigendum: DNA sequence and analysis of human chromosome 18

Sinead B. O'Leary, Jean L. Chang, T. Mikkelsen, 2005, Nature.

DNA sequence and structure requirements for cleavage of V(D)J recombination signal sequences

Christina A. Cuomo, C. Cuomo, C. Mundy, 1996, Molecular and cellular biology.

Bacterial endosymbionts influence fungal transcriptional profiles with implications for host response in the human fungal pathogens Rhizopus microsporus and Rhizopus delemar

Christina A. Cuomo, C. Cuomo, Kerstin Voelz, 2019, bioRxiv.

Phenotypic Variability Correlates with Clinical Outcome in Cryptococcus Isolates Obtained from Botswanan HIV/AIDS Patients

Christina A. Cuomo, J. Perfect, C. Cuomo, 2018, mBio.

Identification of environmental and genetic factors important for Cryptococcus neoformans titan cell formation using new in vitro inducing conditions

Christina A. Cuomo, A. Casadevall, J. Perfect, 2017 .

Transcriptional Heterogeneity of Cryptococcus gattii VGII Compared with Non-VGII Lineages Underpins Key Pathogenicity Pathways

Rhys A. Farrer, F. Balloux, Toni M. Delorey, 2018, mSphere.

Population genetics and microevolution of clinical Candida glabrata reveals recombinant sequence types and hyper-variation within mitochondrial genomes, virulence genes, and drug targets

Christina A. Cuomo, Rhys A. Farrer, C. Cuomo, 2022, Genetics.

Sequencing and characterization of the complete mitochondrial genomes of three Pneumocystis species provide new insights into divergence between human and rodent Pneumocystis

Brad T. Sherman, Christina A. Cuomo, D. Huang, 2013, FASEB journal : official publication of the Federation of American Societies for Experimental Biology.

Conserved loci of leaf and stem rust fungi of wheat share synteny interrupted by lineage-specific influx of repeat elements

Christina A. Cuomo, C. Cuomo, B. Soltani, 2013, BMC Genomics.

Multimodal analysis of the COVID‐19‐associated mucormycosis outbreak in Delhi, India indicates the convergence of clinical and environmental risk factors

C. Cuomo, A. Chowdhary, D. Kontoyiannis, 2023, Mycoses.

Genome Sequence of Lichtheimia ornata, an Emerging Opportunistic Mucorales Pathogen

A. Gnirke, J. Stajich, J. Livny, 2023, Microbiology resource announcements.

Christina A. Cuomo, A. Casadevall, W. Timp, 2023, Proceedings of the National Academy of Sciences of the United States of America.

Mutations in TAC1B: a novel genetic determinant of clinical fluconazole resistance in C. auris

T. C. White, S. Kelly, C. Cuomo, 2020, bioRxiv.

Identification of Candida auris using the updated 8.01 VITEK®2 yeast identification system: a multi-laboratory evaluation study

C. Cuomo, E. Berkow, J. Muñoz, 2019 .

Comparative Genomic and Transcriptomic Analysis of Wangiella dermatitidis, A Major Cause of Phaeohyphomycosis and a Model Black Yeast Human Pathogen