S. Diene

J. Rolain, S. Diene, L. Hadjadj, 2021, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Oliver Horlacher, Damian Szklarczyk, Christian von Mering, 2015, Nucleic Acids Res..

Genome analysis of NDM-1 producing Morganella morganii clinical isolate

J. Rolain, Sushim K Gupta, S. Diene, 2014, Expert review of anti-infective therapy.

Characterisation of blaOXA-538, a new variant of blaOXA-48, in Shewanella xiamenensis isolated from river water in Algeria.

J. Rolain, S. Diene, L. Hadjadj, 2017, Journal of global antimicrobial resistance.

Prevalence and Antimicrobial Resistance of Paeniclostridium sordellii in Hospital Settings

J. Rolain, S. Diene, S. Baron, 2021, Antibiotics.

Investigation of antibiotic resistance in the genomic era of multidrug-resistant Gram-negative bacilli, especially Enterobacteriaceae, Pseudomonas and Acinetobacter

J. Rolain, S. Diene, 2013, Expert review of anti-infective therapy.

Molecular characterization of carbapenem-resistant Gram-negative bacilli clinical isolates in Algeria

J. Rolain, S. Diene, S. Bakour, 2018, Infection and drug resistance.

Genome sequence of a multidrug-resistant Campylobacter coli strain isolated from a newborn with severe diarrhea in Lebanon

J. Rolain, S. Diene, I. Kassem, 2022, Folia Microbiologica.

Genomic Characterization of Colistin-Resistant Isolates from the King Fahad Medical City, Kingdom of Saudi Arabia

S. Diene, L. Okdah, M. Marie, 2022, Antibiotics.

Whole-Genome Sequence of Chryseobacterium oranimense, a Colistin-Resistant Bacterium Isolated from a Cystic Fibrosis Patient in France

J. Rolain, Sushim K Gupta, S. Diene, 2015, Antimicrobial Agents and Chemotherapy.

Culturing Ancient Bacteria Carrying Resistance Genes from Permafrost and Comparative Genomics with Modern Isolates

D. Raoult, P. Fournier, J. Rolain, 2020, Microorganisms.

Carbapenem Resistance and Acinetobacter baumannii in Senegal: The Paradigm of a Common Phenomenon in Natural Reservoirs

D. Raoult, J. Rolain, S. Diene, 2012, PloS one.

Temperate Prophages Increase Bacterial Adhesin Expression and Virulence in an Experimental Model of Endocarditis Due to Staphylococcus aureus From the CC398 Lineage

P. François, S. Diene, M. Girard, 2019, Front. Microbiol..

Dual RNase and β-lactamase Activity of a Single Enzyme Encoded in Archaea

D. Raoult, J. Rolain, S. Diene, 2020, Life.

Dual RNase and β-lactamase activity of a single enzyme encoded in most Archaea

D. Raoult, J. Rolain, S. Diene, 2019, bioRxiv.

Dual RNase and β-lactamase activity of a single enzyme encoded in most Archaea

D. Raoult, J. Rolain, S. Diene, 2019, bioRxiv.

Evaluation of different testing tools for the identification of non-gonococcal Neisseria spp. isolated from Lebanese male semen: a strong and significant association with infertility.

J. Rolain, S. Diene, L. Okdah, 2019, Journal of medical microbiology.

12/111phiA Prophage Domestication Is Associated with Autoaggregation and Increased Ability to Produce Biofilm in Streptococcus agalactiae

P. François, S. Diene, H. Gbaguidi-Haore, 2021, Microorganisms.

Genome sequence of a multidrug-resistant Campylobacter coli strain isolated from a newborn with severe diarrhea in Lebanon

J. Rolain, S. Diene, I. Kassem, 2022, Folia Microbiologica.

Carbapenemase genes and genetic platforms in Gram-negative bacilli: Enterobacteriaceae, Pseudomonas and Acinetobacter species.

J. Rolain, S. Diene, 2014, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

Autochthonous case of mobile colistin resistance mcr-1 gene from uropathogenic Escherichia coli isolate in Sétif hospital, Algeria.

J. Rolain, S. Diene, F. Sahli, 2019, Journal of global antimicrobial resistance.

First report of colistin-resistant Klebsiella pneumoniae clinical isolates in Lebanon.

J. Rolain, S. Diene, A. O. Olaitan, 2017, Journal of global antimicrobial resistance.

Spread of Carbapenem and Colistin-Resistant Klebsiella pneumoniae ST512 Clinical Isolates in Israel: A Cause for Vigilance.

J. Rolain, S. Diene, S. Bakour, 2019, Microbial drug resistance.

Colistin- and Carbapenem-Resistant Klebsiella pneumoniae Clinical_Isolates: Algeria.

J. Rolain, S. Diene, S. Baron, 2019, Microbial drug resistance.

Enigmatic occurrence of NDM-7 enzyme in the community.

P. François, S. Diene, F. Chopin, 2016, International journal of antimicrobial agents.

Phenotypic and genotypic properties of Microbacterium yannicii, a recently described multidrug resistant bacterium isolated from a lung transplanted patient with cystic fibrosis in France

V. Roux, J. Rolain, S. Diene, 2013, BMC Microbiology.

Non-contiguous finished genome sequence and description of Paucisalibacillus algeriensis sp. nov.

J. Rolain, S. Diene, C. Michelle, 2014, Standards in genomic sciences.

Detection of a new variant of OXA-23 carbapenemase in Acinetobacter radioresistens isolates from urban animals in Marseille, France.

J. Rolain, S. Diene, E. Ngaiganam, 2019, Journal of Global Antimicrobial Resistance.

Epidemiology, Phenotypic and Genotypic Characterization of Carbapenem-Resistant Gram-Negative Bacteria from a Libyan Hospital.

J. Rolain, S. Diene, N. Mathlouthi, 2023, Microbial drug resistance.

Genomic Plasticity of Multidrug-Resistant NDM-1 Positive Clinical Isolate of Providencia rettgeri

J. Rolain, S. Diene, A. O. Olaitan, 2015, Genome biology and evolution.

Investigation of multidrug-resistant ST2 Acinetobacter baumannii isolated from Saint George hospital in Lebanon

J. Rolain, S. Diene, S. Chabou, 2019, BMC Microbiology.

Genomic characterisation of an mcr-1 and mcr-3-producing Escherichia coli strain isolated from pigs in France.

J. Rolain, S. Diene, B. Davoust, 2022, Journal of global antimicrobial resistance.

Massive analysis of 64’628 bacterial genomes to decipher a water reservoir and origin of mobile colistin resistance (mcr) gene variants: is there another role for this family of enzymes?

J. Rolain, S. Diene, R. Ruimy, 2019, bioRxiv.

First Description of Extended-Spectrum β-Lactamases and OXA-48 Carbapenemase in Enterobacteriaceae Isolates in Brazzaville, Congo

S. Diene, S. Kobawila, C. A. Kayath, 2020 .

Limosilactobacillus caccae sp. nov., a new bacterial species isolated from the human gut microbiota.

D. Raoult, P. Fournier, S. Diene, 2021, FEMS microbiology letters.

Reply to Planet et al.

P. François, J. Schrenzel, S. Diene, 2016, The Journal of infectious diseases.

Annaba, Algeria from a Hospital Intensive Care Unit in Pseudomonas aeruginosa Clinical Isolates Carrying VIM-2 Carbapenemase in Dissemination of a Class I Integron

J. Rolain, S. Diene, M. Dekhil, 2013 .

Genomic features of an isolate of Empedobacter falsenii harbouring a novel variant of metallo-β-lactamase, blaEBR-4 gene.

J. Rolain, S. Diene, L. Z. Nabti, 2022, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

First whole genome sequence of Peanalcaligenes suwonensis bearing blaVIM-5 Metallo-β-lactamase: A clinical isolate responsible for acute gastroenteritis.

J. Rolain, S. Diene, J. Ehinmidu, 2020, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

How to discover new antibiotic resistance genes?

Seydina M. Diene, Jean-Marc Rolain, J. Rolain, 2019, Expert review of molecular diagnostics.

Emergence of the OXA-23 carbapenemase-encoding gene in multidrug-resistant Acinetobacter baumannii clinical isolates from the Principal Hospital of Dakar, Senegal.

D. Raoult, J. Rolain, S. Diene, 2013, International Journal of Infectious Diseases.

fosM, a New Family of Fosfomycin Resistance Genes Identified in Bacterial Species Isolated from Human Microbiota

J. Rolain, S. Diene, V. Merhej, 2020, Antimicrobial Agents and Chemotherapy.

Comparative Genome Analysis of Staphylococcus lugdunensis Shows Clonal Complex-Dependent Diversity of the Putative Virulence Factor, ess/Type VII Locus

P. François, S. Diene, I. Tournier, 2019, Front. Microbiol..

Real-Time PCR Assay for Rapid and Simultaneous Detection of vanA and vanB Genes in Clinical Strains

J. Rolain, S. Diene, L. Hadjadj, 2021, Diagnostics.

Characterization of Staphylococcus aureus Isolated from Food Products in Western Algeria.

J. Rolain, S. Diene, M. Kihal, 2018, Foodborne pathogens and disease.

Heteroresistance to Colistin in Clinical Isolates of Klebsiella pneumoniae Producing OXA-48

E. Pérez-Nadales, J. Rolain, S. Diene, 2023, Antibiotics.

New Delhi Metallo-beta-lactamase around the world: an eReview using Google Maps.

D. Raoult, J. Rolain, S. Diene, 2014, Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin.

Origin, Diversity, and Multiple Roles of Enzymes with Metallo-β-Lactamase Fold from Different Organisms

J. Rolain, S. Diene, P. Pontarotti, 2023, Cells.

Transcriptional Modulation of Penicillin-Binding Protein 1b, Outer Membrane Protein P2 and Efflux Pump (AcrAB-TolC) during Heat Stress Is Correlated to Enhanced Bactericidal Action of Imipenem on Non-typeable Haemophilus influenzae

P. François, J. Schrenzel, S. Diene, 2018, Front. Microbiol..

Ampicillin-resistant Haemophilus influenzae isolates in Geneva: serotype, antimicrobial susceptibility, and β-lactam resistance mechanisms

P. François, J. Schrenzel, S. Diene, 2015, European Journal of Clinical Microbiology & Infectious Diseases.

Comparative Genomics of Community-Associated Methicillin-Resistant Staphylococcus aureus Shows the Emergence of Clone ST8-USA300 in Geneva, Switzerland.

P. François, J. Schrenzel, S. Diene, 2016, The Journal of infectious diseases.

D. Raoult, J. Rolain, S. Morand, 2014, International journal of antimicrobial agents.

First Genome Description of Providencia vermicola Isolate Bearing NDM-1 from Blood Culture

J. Rolain, S. Diene, J. Lavigne, 2021, Microorganisms.

Analysis of the prophages carried by human infecting isolates provides new insight into the evolution of Group B Streptococcus species.

P. François, S. Diene, A. Valentin, 2017, Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases.

ARG-ANNOT, a New Bioinformatic Tool To Discover Antibiotic Resistance Genes in Bacterial Genomes

J. Rolain, Sushim K Gupta, Babu roshan Padmanabhan, 2013, Antimicrobial Agents and Chemotherapy.

Emergence of Carbapenem-Resistant Gram-Negative Isolates in Hospital Settings in Djibouti

J. Rolain, S. Diene, Ayan Ali Ragueh, 2023, Antibiotics.

Dual infections of two carbapenemase-producing Acinetobacter baumannii clinical strains isolated from the same blood culture sample of a patient in Iran

J. Rolain, S. Diene, S. Shoja, 2018, Antimicrobial Resistance & Infection Control.

Extensive Comparative Genomic Analysis of Enterococcus faecalis and Enterococcus faecium Reveals a Direct Association between the Absence of CRISPR–Cas Systems, the Presence of Anti-Endonuclease (ardA) and the Acquisition of Vancomycin Resistance in E. faecium

J. Rolain, S. Diene, P. Colson, 2021, Microorganisms.

The SIB Swiss Institute of Bioinformatics’ resources: focus on curated databases

Joshua L. Payne, Christian J. A. Sigrist, Brian J. Stevenson, 2015, Nucleic Acids Res..

Emergence of plasmid-encoded VIM-2–producing Pseudomonas aeruginosa isolated from clinical samples in Lebanon

J. Rolain, S. Diene, C. Al-Bayssari, 2019, New microbes and new infections.

Using MALDI-TOF MS typing method to decipher outbreak: the case of Staphylococcus saprophyticus causing urinary tract infections (UTIs) in Marseille, France

D. Raoult, J. Rolain, S. Diene, 2017, European Journal of Clinical Microbiology & Infectious Diseases.

Non-contiguous finished genome sequence and description of Paucisalibacillus algeriensis sp. nov.

J. Rolain, S. Diene, C. Michelle, 2014, Standards in genomic sciences.