J. R. van der Meer

发表

Information from single-cell bacterial biosensors: what is it good for?

R. Tecon, J. R. van der Meer, 2006, Current opinion in biotechnology.

Microbial Composition and Structure of a Rotating Biological Contactor Biofilm Treating Ammonium-Rich Wastewater without Organic Carbon

J. R. van der Meer, K. Egli, F. Bosshard, 2003, Microbial Ecology.

Molecular mechanisms of genetic adaptation to xenobiotic compounds

Vos, Meer, W. D. de Vos, 1992, Microbiological reviews.

Bacterial Transcriptional Regulators for Degradation Pathways of Aromatic Compounds

Jan Roelof van der Meer, J. R. van der Meer, D. Tropel, 2004, Microbiology and Molecular Biology Reviews.

Genomic islands and the evolution of catabolic pathways in bacteria.

J. R. van der Meer, V. Sentchilo, 2003, Current opinion in biotechnology.

Genomic islands: tools of bacterial horizontal gene transfer and evolution

D. Crook, R. Harding, J. R. van der Meer, 2008, FEMS microbiology reviews.

Immediate ecotoxicological effects of short-lived oil spills on marine biota

J. Huisman, J. R. van der Meer, B. van der Burg, 2016, Nature Communications.

Development and characterization of a whole-cell bioluminescent sensor for bioavailable middle-chain alkanes in contaminated groundwater samples

J. R. van der Meer, H. Harms, M. Jaspers, 1997, Applied and environmental microbiology.

Illuminating the detection chain of bacterial bioreporters.

J. R. van der Meer, D. Tropel, M. Jaspers, 2004, Environmental microbiology.

Bacterial Biosensors for Measuring Availability of Environmental Pollutants

R. Tecon, J. R. van der Meer, 2008, Sensors.

Development of a multistrain bacterial bioreporter platform for the monitoring of hydrocarbon contaminants in marine environments.

R. Tecon, J. R. van der Meer, V. Sentchilo, 2010, Environmental science & technology.

Development of bioreporter assays for the detection of bioavailability of long-chain alkanes based on the marine bacterium Alcanivorax borkumensis strain SK2.

R. Tecon, J. R. van der Meer, J. S. Arey, 2011, Environmental microbiology.

Challenges in microbial ecology: building predictive understanding of community function and dynamics

Orkun S. Soyer, Otto X. Cordero, Sam P. Brown, 2016, The ISME Journal.

Local Environmental Factors Drive Divergent Grassland Soil Bacterial Communities in the Western Swiss Alps

J. R. van der Meer, A. Guisan, H. Niculita‐Hirzel, 2016, Applied and Environmental Microbiology.

Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models

Anush Chiappino-Pepe, J. R. van der Meer, V. Sentchilo, 2019, npj Systems Biology and Applications.

Development of a set of simple bacterial biosensors for quantitative and rapid measurements of arsenite and arsenate in potable water.

Jan Roelof van der Meer, Sylvia Daunert, Hauke Harms, 2003, Environmental science & technology.

Development of a microfluidics biosensor for agarose-bead immobilized Escherichia coli bioreporter cells for arsenite detection in aqueous samples.

Jan Roelof van der Meer, Nina Buffi, Harald van Lintel, 2011, Lab on a chip.

Internal arsenite bioassay calibration using multiple bioreporter cell lines

Hauke Harms, Antonis Chatzinotas, J. R. van der Meer, 2007, Microbial biotechnology.

Development of a Set of Simple Bacterial Biosensors for Quantitative and Rapid Measurements of Arsenite and Arsenate in Potable Water.

Jan Roelof van der Meer, Sylvia Daunert, Jessika Feliciano, 2004, Environmental Science and Technology.

Effect of Groundwater Composition on Arsenic Detection by Bacterial Biosensors

Jan Roelof van der Meer, Hauke Harms, Stephan J. Hug, 2005 .

Bacterial bioassay for rapid and accurate analysis of arsenic in highly variable groundwater samples.

Michael Berg, Pham Hung Viet, P. Viet, 2005, Environmental science & technology.

Mutant HbpR transcription activator isolation for 2‐chlorobiphenyl via green fluorescent protein‐based flow cytometry and cell sorting

J. R. van der Meer, S. Beggah, C. Vogne, 2007, Microbial biotechnology.

Unlike PAHs from Exxon Valdez crude oil, PAHs from Gulf of Alaska coals are not readily bioavailable.

R. Tecon, J. R. van der Meer, J. Short, 2010, Environmental science & technology.

Enrichment, phylogenetic analysis and detection of a bacterium that performs enhanced biological phosphate removal in activated sludge.

J. R. van der Meer, C. Werlen, A. Zehnder, 1999, Systematic and applied microbiology.

Bioreporters and biosensors for arsenic detection. Biotechnological solutions for a world-wide pollution problem.

Jan Roelof van der Meer, Martial Geiser, Nina Buffi, 2013, Current opinion in biotechnology.

Engineering of Sensory Proteins with New Ligand-Binding Capacities

J. R. van der Meer, Diogo Tavares, Vitali Maffenbeier, 2019, Handbook of Cell Biosensors.

Delft University of Technology Quantitative chemical biosensing by bacterial chemotaxis in microfluidic chips

C. Mazza, C. Picioreanu, H. van Lintel, 2018 .

cis-Chlorobenzene Dihydrodiol Dehydrogenase (TcbB) from Pseudomonas sp. Strain P51, Expressed in Escherichia coli DH5α(pTCB149), Catalyzes Enantioselective Dehydrogenase Reactions

J. R. van der Meer, H. E. Kohler, H. Raschke, 1999, Applied and Environmental Microbiology.

An analog to digital converter controls bistable transfer competence development of a widespread bacterial integrative and conjugative element

C. Mazza, J. R. van der Meer, Nicolas Carraro, 2020, bioRxiv.

A four-step regulatory cascade controls bistable transfer competence development of the integrative and conjugative element ICEclc in Pseudomonas

C. Mazza, J. R. van der Meer, Nicolas Carraro, 2019, bioRxiv.

The urgent need for microbiology literacy in society.

A. Danchin, V. de Lorenzo, W. Verstraete, 2019, Environmental microbiology.

Sequence analysis of the Pseudomonas sp. strain P51 tcb gene cluster, which encodes metabolism of chlorinated catechols: evidence for specialization of catechol 1,2-dioxygenases for chlorinated substrates

Meer, W. D. de Vos, J. R. van der Meer, 1991, Journal of bacteriology.

Characterization of HbpR binding by site‐directed mutagenesis of its DNA‐binding site and by deletion of the effector domain

J. R. van der Meer, D. Tropel, 2005, The FEBS journal.

Transcriptome and membrane fatty acid analyses reveal different strategies for responding to permeating and non-permeating solutes in the bacterium Sphingomonas wittichii

H. Heipieper, J. R. van der Meer, David R. Johnson, 2011, BMC Microbiology.

Comparison of naphthalene bioavailability determined by whole-cell biosensing and availability determined by extraction with Tenax.

R. Tecon, J. R. van der Meer, H. Harms, 2008, Environmental pollution.

The hidden life of integrative and conjugative elements

J. R. van der Meer, Nicolas Carraro, Ryo Miyazaki, 2017, FEMS microbiology reviews.

The TetR-Type MfsR Protein of the Integrative and Conjugative Element (ICE) ICEclc Controls both a Putative Efflux System and Initiation of ICE Transfer

J. R. van der Meer, Ryo Miyazaki, S. Sulser, 2014, Journal of bacteriology.

Cloning and characterization of plasmid-encoded genes for the degradation of 1,2-dichloro-, 1,4-dichloro-, and 1,2,4-trichlorobenzene of Pseudomonas sp. strain P51

W. D. de Vos, J. R. van der Meer, A. Zehnder, 1991, Journal of bacteriology.

Community shifts in a seeded 3-chlorobenzoate degrading membrane biofilm reactor: indications for involvement of in situ horizontal transfer of the clc-element from inoculum to contaminant bacteria.

M. Mergeay, C. Vandecasteele, J. R. van der Meer, 2002, Environmental microbiology.

Dynamics of Multiple lin Gene Expression in Sphingomonas paucimobilis B90A in Response to Different Hexachlorocyclohexane Isomers

M. Suar, R. Lal, J. R. van der Meer, 2004, Applied and Environmental Microbiology.

Cloning and Characterization of lin Genes Responsible for the Degradation of Hexachlorocyclohexane Isomers by Sphingomonas paucimobilis Strain B90

M. Suar, R. Lal, J. R. van der Meer, 2002, Applied and Environmental Microbiology.

Archaeorhizomycetes Spatial Distribution in Soils Along Wide Elevational and Environmental Gradients Reveal Co-abundance Patterns With Other Fungal Saprobes and Potential Weathering Capacities

J. R. van der Meer, A. Guisan, H. Niculita‐Hirzel, 2019, Frontiers in Microbiology.

Close-Range Interactions Favor Growth in Random-Paired Extracted Soil Bacteria

J. R. van der Meer, S. Pelet, David R. Johnson, 2019, bioRxiv.

The Genome of the Toluene-Degrading Pseudomonas veronii Strain 1YdBTEX2 and Its Differential Gene Expression in Contaminated Sand

L. Pillard, A. Goesmann, K. Harshman, 2016, PloS one.

Quantification of bacterial mRNA involved in degradation of 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 from liquid culture and from river sediment by reverse transcriptase PCR (RT/PCR).

J. R. van der Meer, R. Meckenstock, M. Snozzi, 1998, FEMS microbiology letters.

Biosensors in Monitoring Water Quality and Safety: An Example of a Miniaturizable Whole-Cell Based Sensor for Hg2+ Optical Detection in Water

J. R. van der Meer, E. Sciuto, S. Libertino, 2019, Water.

Draft Genome Sequence of Microbacterium foliorum Strain 122 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site

J. R. van der Meer, V. Sentchilo, R. Fulthorpe, 2017, Genome Announcements.

Draft Genome Sequence of Plantibacter flavus Strain 251 Isolated from a Plant Growing in a Chronically Hydrocarbon-Contaminated Site

J. R. van der Meer, V. Sentchilo, R. Fulthorpe, 2017, Genome Announcements.

First day of an oil spill on the open sea: early mass transfers of hydrocarbons to air and water.

J. Huisman, J. R. van der Meer, C. Reddy, 2014, Environmental science & technology.

Generalist hydrocarbon-degrading bacterial communities in the oil-polluted water column of the North Sea

K. Timmis, J. R. van der Meer, T. McGenity, 2014, Microbial biotechnology.

Evolution of a Pathway for Chlorobenzene Metabolism Leads to Natural Attenuation in Contaminated Groundwater

J. R. van der Meer, C. Werlen, J. Spain, 1998, Applied and Environmental Microbiology.

Identification of genes potentially involved in solute stress response in Sphingomonas wittichii RW1 by transposon mutant recovery

J. R. van der Meer, Clémence Roggo, E. Coronado, 2014, Front. Microbiol..

Toxicity of triclosan, penconazole and metalaxyl on Caulobacter crescentus and a freshwater microbial community as assessed by flow cytometry.

J. R. van der Meer, David R. Johnson, K. Czechowska, 2009, Environmental microbiology.

The Broad Substrate Chlorobenzene Dioxygenase and cis-Chlorobenzene Dihydrodiol Dehydrogenase of Pseudomonas sp. Strain P51 Are Linked Evolutionarily to the Enzymes for Benzene and Toluene Degradation (*)

J. R. van der Meer, C. Werlen, H. Kohler, 1996, The Journal of Biological Chemistry.

Enantioselective Transformation of α-Hexachlorocyclohexane by the Dehydrochlorinases LinA1 and LinA2 from the Soil Bacterium Sphingomonas paucimobilis B90A

M. Suar, R. Lal, J. R. van der Meer, 2005, Applied and Environmental Microbiology.

Comparison of differential gene expression to water stress among bacteria with relevant pollutant-degradation properties.

J. R. van der Meer, S. Beggah, E. Rojas, 2016, Environmental microbiology reports.

Genome-wide analysis of Sphingomonas wittichii RW1 behaviour during inoculation and growth in contaminated sand

J. R. van der Meer, Silvia K. Moreno-Forero, 2014, The ISME Journal.

Molecular Diversity of Plasmids Bearing Genes That Encode Toluene and Xylene Metabolism in Pseudomonas Strains Isolated from Different Contaminated Sites in Belarus

J. R. van der Meer, A. Zehnder, V. Sentchilo, 2000, Applied and Environmental Microbiology.

Complete alanine scanning of the Escherichia coli RbsB ribose binding protein reveals residues important for chemoreceptor signaling and periplasmic abundance

J. R. van der Meer, V. Sentchilo, S. Beggah, 2017, Scientific Reports.

Mechanistic Modeling of Genetic Circuits for ArsR Arsenic Regulation.

V. Hatzimanikatis, J. R. van der Meer, Davide Merulla, 2017, ACS synthetic biology.

Novel use of a whole cell E. coli bioreporter as a urinary exposure biomarker.

J. Readman, J. R. van der Meer, C. Lewis, 2009, Environmental science & technology.

Transcriptional profiling of Gram-positive Arthrobacter in the phyllosphere: induction of pollutant degradation genes by natural plant phenolic compounds.

J. R. van der Meer, Jochen A. Müller, J. Leveau, 2014, Environmental microbiology.

Influence of amino acid substitutions in the nisin leader peptide on biosynthesis and secretion of nisin by Lactococcus lactis.

W. D. de Vos, R. Siezen, J. R. van der Meer, 1994, The Journal of biological chemistry.

A Miniaturized Microbe-Silicon-Chip Based on Bioluminescent Engineered Escherichia coli for the Evaluation of Water Quality and Safety

J. R. van der Meer, E. Sciuto, S. Libertino, 2021, International journal of environmental research and public health.

Exposure to Solute Stress Affects Genome-Wide Expression but Not the Polycyclic Aromatic Hydrocarbon-Degrading Activity of Sphingomonas sp. Strain LH128 in Biofilms

H. Heipieper, J. Hofkens, J. R. van der Meer, 2012, Applied and Environmental Microbiology.

Characterisation of the Putative Effector Interaction Site of the Regulatory HbpR Protein from Pseudomonas azelaica by Site-Directed Mutagenesis

R. Lal, J. R. van der Meer, S. Arias, 2011, PloS one.

Burkholderia sartisoli sp. nov., isolated from a polycyclic aromatic hydrocarbon-contaminated soil.

P. Vandamme, J. R. van der Meer, J. Salles, 2008, International journal of systematic and evolutionary microbiology.

Computational redesign of the Escherichia coli ribose-binding protein ligand binding pocket for 1,3-cyclohexanediol and cyclohexanol

Shantanu Roy, J. R. van der Meer, V. Sentchilo, 2019, Scientific Reports.

Reversible and irreversible pollutant-induced bacterial cellular stress effects measured by ethidium bromide uptake and efflux.

J. R. van der Meer, K. Czechowska, 2012, Environmental science & technology.

Quantification of bacterial mRNA involved in degradation of 1,2,4-trichlorobenzene by Pseudomonas sp. strain P51 from liquid culture and from river sediment by reverse transcriptase PCR (RT/PCR).

J. R. van der Meer, R. Meckenstock, M. Snozzi, 1998, FEMS microbiology letters.

Inhibition of denitrification activity but not of mRNA induction in Paracoccus denitrificans by nitrite at a suboptimal pH

J. R. van der Meer, A. Zehnder, M. Snozzi, 1997, Antonie van Leeuwenhoek.

Analytics with engineered bacterial bioreporter strains and systems.

J. R. van der Meer, 2006, Current opinion in biotechnology.

Examining chemical compound biodegradation at low concentrations through bacterial cell proliferation.

J. R. van der Meer, V. Sentchilo, S. Beggah, 2013, Environmental science & technology.

Field testing of arsenic in groundwater samples of Bangladesh using a test kit based on lyophilized bioreporter bacteria.

Hauke Harms, Carola Endes, Antonis Chatzinotas, 2012, Environmental science & technology.

Electrochemical As(III) whole-cell based biochip sensor.

Jan Roelof van der Meer, Hubert H Girault, H. Girault, 2013, Biosensors & bioelectronics.

Community-wide plasmid gene mobilization and selection

Ryo Miyazaki, Kerrie Barry, Marc Robinson-Rechavi, 2012 .

Genetic Analysis of Phenoxyalkanoic Acid Degradation in Sphingomonas herbicidovorans MH

J. R. van der Meer, C. Werlen, H. Kohler, 2004, Applied and Environmental Microbiology.

TfdDII, one of the two chloromuconate cycloisomerases of Ralstonia eutropha JMP134 (pJP4), cannot efficiently convert 2-chloro-cis,cis-muconate to trans-dienelactone to allow growth on 3-chlorobenzoate

J. R. van der Meer, A. Zehnder, M. Suter, 2002, Archives of Microbiology.

Characterization of a Second tfd Gene Cluster for Chlorophenol and Chlorocatechol Metabolism on Plasmid pJP4 in Ralstonia eutropha JMP134(pJP4)

J. Leveau, J. R. van der Meer, A. Zehnder, 2000, Journal of bacteriology.

Dynamics of multigene expression during catabolic adaptation of Ralstonia eutropha JMP134 (pJP4) to the herbicide 2,4‐dichlorophenoxyacetate

J. Leveau, J. R. van der Meer, C. Werlen, 1999, Molecular microbiology.

The tfdR gene product can successfully take over the role of the insertion element-inactivated TfdT protein as a transcriptional activator of the tfdCDEF gene cluster, which encodes chlorocatechol degradation in Ralstonia eutropha JMP134(pJP4)

Meer, J. Leveau, J. R. van der Meer, 1996, Journal of bacteriology.

Genetic adaptation of bacteria to chlorinated aromatic compounds.

J. R. van der Meer, 1994, FEMS microbiology reviews.

Characterization of the Pseudomonas sp. strain P51 gene tcbR, a LysR-type transcriptional activator of the tcbCDEF chlorocatechol oxidative operon, and analysis of the regulatory region

W. D. de Vos, J. Leveau, J. R. van der Meer, 1991, Journal of bacteriology.

Comparative genome analysis of Pseudomonas knackmussii B13, the first bacterium known to degrade chloroaromatic compounds.

A. Goesmann, L. Falquet, Shantanu Roy, 2015, Environmental microbiology.

Evolution of a chlorobenzene degradative pathway among bacteria in a contaminated groundwater mediated by a genomic island in Ralstonia.

J. R. van der Meer, C. Werlen, J. Spain, 2003, Environmental Microbiology.

The tfdK Gene Product Facilitates Uptake of 2,4-Dichlorophenoxyacetate by Ralstonia eutrophaJMP134(pJP4)

J. Leveau, J. R. van der Meer, A. Zehnder, 1998, Journal of bacteriology.

Chromosomal Integration, Tandem Amplification, and Deamplification in Pseudomonas putida F1 of a 105-Kilobase Genetic Element Containing the Chlorocatechol Degradative Genes from Pseudomonas sp. Strain B13

J. R. van der Meer, A. Zehnder, D. Springael, 1998, Journal of bacteriology.

Genetic characterization of insertion sequence ISJP4 on plasmid pJP4 from Ralstonia eutropha JMP134.

J. Leveau, J. R. van der Meer, Jan Roelof van der Meer, 1997, Gene.

Low-Frequency Horizontal Transfer of an Element Containing the Chlorocatechol Degradation Genes fromPseudomonas sp. Strain B13 to Pseudomonas putidaF1 and to Indigenous Bacteria in Laboratory-Scale Activated-Sludge Microcosms

J. R. van der Meer, A. Zehnder, R. Ravatn, 1998, Applied and Environmental Microbiology.

Genome-wide gene expression changes of Pseudomonas veronii 1YdBTEX2 during bioaugmentation in polluted soils

J. R. van der Meer, V. Sentchilo, N. Hadadi, 2021, Environmental microbiome.

Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes

Meer, J. R. van der Meer, A. Zehnder, 1996, Journal of bacteriology.

Enrichment and characterization of an anammox bacterium from a rotating biological contactor treating ammonium-rich leachate

P. Alvarez, J. R. van der Meer, K. Egli, 2001, Archives of Microbiology.

The clc Element of Pseudomonas sp. Strain B13, a Genomic Island with Various Catabolic Properties

A. Pühler, T. Vallaeys, J. R. van der Meer, 2006, Journal of bacteriology.

Insights into Mobile Genetic Elements of the Biocide-Degrading Bacterium Pseudomonas nitroreducens HBP-1

J. R. van der Meer, Nicolas Carraro, C. Bertelli, 2020, Genes.

Characterization of a MexAB-OprM efflux system necessary for productive metabolism of Pseudomonas azelaica HBP1 on 2-hydroxybiphenyl

J. R. van der Meer, C. Reimmann, K. Czechowska, 2013, Front. Microbiol..

HbpR, a New Member of the XylR/DmpR Subclass within the NtrC Family of Bacterial Transcriptional Activators, Regulates Expression of 2-Hydroxybiphenyl Metabolism in Pseudomonas azelaica HBP1

J. R. van der Meer, M. Jaspers, David A. M. Goslings, 2000, Journal of bacteriology.

Use of flow cytometric methods for single-cell analysis in environmental microbiology.

J. R. van der Meer, David R. Johnson, K. Czechowska, 2008, Current opinion in microbiology.

An Operon of Three Transcriptional Regulators Controls Horizontal Gene Transfer of the Integrative and Conjugative Element ICEclc in Pseudomonas knackmussii B13

J. R. van der Meer, Ryo Miyazaki, S. Sulser, 2014, PLoS genetics.

Bacterial community structure of a pesticide-contaminated site and assessment of changes induced in community structure during bioremediation.

J. R. van der Meer, D. Paul, R. Jain, 2006, FEMS microbiology ecology.

Genome-Wide Analysis of Salicylate and Dibenzofuran Metabolism in Sphingomonas Wittichii RW1

J. R. van der Meer, David R. Johnson, Clémence Roggo, 2012, Front. Microbio..

Intracellular excision and reintegration dynamics of the ICEclc genomic island of Pseudomonas knackmussii sp. strain B13

J. R. van der Meer, M. Minoia, V. Sentchilo, 2009, Molecular microbiology.

Prospects for harnessing biocide resistance for bioremediation and detoxification

H. Heipieper, S. Atashgahi, A. Stams, 2018, Science.

Bridging the Holistic-Reductionist Divide in Microbial Ecology

Jan Roelof van der Meer, David R Johnson, Dani Or, 2019, mSystems.

Subcellular Localization Defects Characterize Ribose-Binding Mutant Proteins with New Ligand Properties in Escherichia coli

J. R. van der Meer, Diogo Tavares, 2021, Applied and environmental microbiology.

Host diet mediates a negative relationship between abundance and diversity of Drosophila gut microbiota

T. Kawecki, J. R. van der Meer, E. Yashiro, 2018, Ecology and evolution.

Reproducible Propagation of Species-Rich Soil Bacterial Communities Suggests Robust Underlying Deterministic Principles of Community Formation

C. von Mering, J. R. van der Meer, V. Sentchilo, 2022, mSystems.

Reproducible Propagation of Species-Rich Soil Microbiomes Suggests Robust Underlying Deterministic Principles of Community Formation

C. von Mering, J. R. van der Meer, V. Sentchilo, 2021 .

Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data

J. R. van der Meer, A. F. Babu, N. Hadadi, 2020, Communications Biology.

Rapid detection of microbiota cell type diversity using machine-learned classification of flow cytometry data

Birge D. Özel Duygan, Noushin Hadadi, Ambrin Farizah Babu, 2020, Communications Biology.

Environmental connectivity controls diversity in soil microbial communities

J. R. van der Meer, S. Pelet, David R. Johnson, 2021, Communications biology.

Regulatable and Modulable Background Expression Control in Prokaryotic Synthetic Circuits by Auxiliary Repressor Binding Sites.

Jan Roelof van der Meer, J. R. van der Meer, Davide Merulla, 2016, ACS synthetic biology.

Recent advances in microbial community analysis from machine learning of multiparametric flow cytometry data.

J. R. van der Meer, B. D. Özel Duygan, 2022, Current opinion in biotechnology.

Physiological and transcriptome changes induced by Pseudomonas putida acquisition of an integrative and conjugative element

J. R. van der Meer, H. Yano, V. Sentchilo, 2018, Scientific Reports.

Improved Statistical Analysis of Low Abundance Phenomena in Bimodal Bacterial Populations

J. R. van der Meer, Friedrich B M Reinhard, 2013, PloS one.

A bistable prokaryotic differentiation system underlying development of conjugative transfer competence

J. R. van der Meer, Nicolas Carraro, V. Sentchilo, 2022, PLoS genetics.

A bistable orthogonal prokaryotic differentiation system underlying development of conjugative transfer competence

J. R. van der Meer, Nicolas Carraro, V. Sentchilo, 2021, bioRxiv.

Characterization of an atypical but widespread type IV secretion system for transfer of the integrative and conjugative element (ICEclc) in Pseudomonas putida

J. R. van der Meer, Andrea Daveri, Valentina Benigno, 2023, Nucleic acids research.

STrack: A Tool to Simply Track Bacterial Cells in Microscopy Time-Lapse Images

J. R. van der Meer, H. Todorov, Tania Miguel Trabajo, 2022, bioRxiv.

Transient Replication in Specialized Cells Favors Transfer of an Integrative and Conjugative Element

J. R. van der Meer, François Delavat, Roxane Moritz, 2019, mBio.

Highly variable individual donor cell fates characterize robust horizontal gene transfer of an integrative and conjugative element

Sara Mitri, J. R. van der Meer, S. Pelet, 2016, Proceedings of the National Academy of Sciences.

Cellular Variability of RpoS Expression Underlies Subpopulation Activation of an Integrative and Conjugative Element

J. R. van der Meer, M. Minoia, Friedrich B M Reinhard, 2012, PLoS genetics.

A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13

J. R. van der Meer, Ryo Miyazaki, 2011, Molecular microbiology.

Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13

J. R. van der Meer, M. Minoia, David R. Johnson, 2010, BMC Microbiology.

Stochasticity and bistability in horizontal transfer control of a genomic island in Pseudomonas

J. R. van der Meer, M. Minoia, V. Sentchilo, 2008, Proceedings of the National Academy of Sciences.

Unusual Integrase Gene Expression on the clc Genomic Island in Pseudomonas sp. Strain B13

J. R. van der Meer, C. Werlen, A. Zehnder, 2003, Journal of bacteriology.

Characterization of two alternative promoters for integrase expression in the clc genomic island of Pseudomonas sp. strain B13

J. R. van der Meer, A. Zehnder, V. Sentchilo, 2003, Molecular microbiology.

Measuring mass transfer processes of octane with the help of an alkSalkB::gfp-tagged Escherichia coli.

J. R. van der Meer, A. Zehnder, H. Harms, 2001, Environmental microbiology.

Assessing Antibiotics Biodegradation and Effects at Sub-inhibitory Concentrations by Quantitative Microbial Community Deconvolution

J. R. van der Meer, K. Fenner, B. D. Özel Duygan, 2021, Frontiers in Environmental Science.

Colonization of aerobic biofilms by sulfate‐reducing bacteria

M. Power, J. R. van der Meer, H. Harms, 2001 .

Adaptation to Chronic Nutritional Stress Leads to Reduced Dependence on Microbiota in Drosophila melanogaster

T. Kawecki, J. R. van der Meer, B. Erkosar, 2017, mBio.

Adaptation to chronic malnutrition leads to reduced dependence on microbiota in Drosophila

T. Kawecki, J. R. van der Meer, B. Erkosar, 2017, bioRxiv.

Assessing Biodegradability of Chemical Compounds from Microbial Community Growth Using Flow Cytometry

J. R. van der Meer, B. D. Özel Duygan, L. Baroux, 2021, mSystems.

Sequencing and characterizing the genome of Estrella lausannensis as an undergraduate project: training students and biological insights

L. Farinelli, A. Goesmann, L. Falquet, 2015, Front. Microbiol..

Predicting spatial patterns of soil bacteria under current and future environmental conditions

Heidi K. Mod, N. Guex, M. Pagni, 2021, The ISME Journal.

Meta-scale mountain grassland observatories uncover commonalities as well as specific interactions among plant and non-rhizosphere soil bacterial communities

J. R. van der Meer, A. Guisan, H. Niculita‐Hirzel, 2018, Scientific Reports.

Fitness-Conditional Genes for Soil Adaptation in the Bioaugmentation Agent Pseudomonas veronii 1YdBTEX2

J. R. van der Meer, Nicolas Carraro, V. Sentchilo, 2023, mSystems.

Genome-wide transposon insertion scanning of environmental survival functions in the polycyclic aromatic hydrocarbon degrading bacterium Sphingomonas wittichii RW1.

Clémence Roggo, Jan Roelof van der Meer, Johann Weber, 2013, Environmental microbiology.

Identification of a novel composite transposable element, Tn5280, carrying chlorobenzene dioxygenase genes of Pseudomonas sp. strain P51

W. D. de Vos, J. R. van der Meer, A. Zehnder, 1991, Journal of bacteriology.

Analysis of bioavailable arsenic in rice with whole cell living bioreporter bacteria.

Jan Roelof van der Meer, J. R. van der Meer, Barbara Baumann, 2007, Journal of agricultural and food chemistry.

Bacterial bioreporter detection of arsenic associated with iron oxides.

J. R. van der Meer, Amanda J. Finger, J. Peña, 2018, Environmental science. Processes & impacts.

Miniaturized electrochemical biosensor based on whole‐cell for heavy metal ions detection in water

J. R. van der Meer, S. Petralia, E. Sciuto, 2020, Biotechnology and bioengineering.

Community Analysis of Ammonia and Nitrite Oxidizers during Start-Up of Nitritation Reactors

M. Wagner, J. R. van der Meer, K. Egli, 2003, Applied and Environmental Microbiology.

Sphingomonas wittichii RW1 gene reporters interrogating the dibenzofuran metabolic network highlight conditions for early successful development in contaminated microcosms.

J. R. van der Meer, Annabelle Valtat, E. Coronado, 2015, Environmental microbiology reports.

University of Groningen Characterization of the Lactococcus lactis Nisin A Operon Genes nisP , Encoding a Subtilisin-Like Serine Protease Involved in Precursor Processing , and nisR , Encoding a Regulatory Protein Involved in Nisin Biosynthesis

W. D. de Vos, R. Siezen, J. R. van der Meer, 2019 .

Miniaturized bacterial biosensor system for arsenic detection holds great promise for making integrated measurement device

Jan Roelof van der Meer, Nina Buffi, Harald van Lintel, 2011, Bioengineered bugs.

Measurement of Biologically Available Naphthalene in Gas and Aqueous Phases by Use of a Pseudomonas putida Biosensor

Jan Roelof van der Meer, J. R. van der Meer, C. Werlen, 2004, Applied and Environmental Microbiology.

Ribose-Binding Protein Mutants With Improved Interaction Towards the Non-natural Ligand 1,3-Cyclohexanediol

J. R. van der Meer, Diogo Tavares, 2021, Frontiers in Bioengineering and Biotechnology.

Population dynamics of an introduced bacterium degrading chlorinated benzenes in a soil column and in sewage sludge

J. R. van der Meer, R. Meckenstock, P. Steinle, 1999, Biodegradation.

Regulated bacterial interaction networks: A mathematical framework to describe competitive growth under inclusion of metabolite cross-feeding

C. Mazza, J. R. van der Meer, Manupriyam Dubey, 2023, bioRxiv.

Organization of lin Genes and IS6100 among Different Strains of Hexachlorocyclohexane-Degrading Sphingomonas paucimobilis: Evidence for Horizontal Gene Transfer

M. Suar, R. Lal, J. R. van der Meer, 2004, Journal of bacteriology.

Towards improved biomonitoring tools for an intensified sustainable multi‐use environment

J. R. van der Meer, 2016, Microbial biotechnology.

Identification of opsA, a Gene Involved in Solute Stress Mitigation and Survival in Soil, in the Polycyclic Aromatic Hydrocarbon-Degrading Bacterium Novosphingobium sp. Strain LH128

J. R. van der Meer, D. Springael, R. Lavigne, 2014, Applied and Environmental Microbiology.

Analysis of the binding site of the LysR-type transcriptional activator TcbR on the tcbR and tcbC divergent promoter sequences

W. D. de Vos, J. Leveau, J. R. van der Meer, 1994, Journal of bacteriology.

Miniaturized and integrated whole cell living bacterial sensors in field applicable autonomous devices.

Clémence Roggo, Jan Roelof van der Meer, J. R. van der Meer, 2017, Current opinion in biotechnology.

Host and invader impact of transfer of the clc genomic island into Pseudomonas aeruginosa PAO1

J. R. van der Meer, O. Hagenbüchle, M. Gaillard, 2008, Proceedings of the National Academy of Sciences.

Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Cells Chemotactic to Aromatic Compounds

R. Stocker, J. R. van der Meer, Nicolas Carraro, 2018, Applied and Environmental Microbiology.

Purification and Characterization of Two Enantioselective α-Ketoglutarate-Dependent Dioxygenases, RdpA and SdpA, from Sphingomonas herbicidovorans MH

J. R. van der Meer, H. Kohler, T. Fleischmann, 2006, Applied and Environmental Microbiology.

Double-tagged fluorescent bacterial bioreporter for the study of polycyclic aromatic hydrocarbon diffusion and bioavailability.

R. Tecon, J. R. van der Meer, Olivier Binggeli, 2009, Environmental microbiology.

An automated microreactor for semi-continuous biosensor measurements.

Jan Roelof van der Meer, Martial Geiser, Frederic Truffer, 2016, Lab on a chip.

Ultrasensitive reporter protein detection in genetically engineered bacteria.

Jan Roelof van der Meer, Theo Lasser, Hauke Harms, 2005, Analytical chemistry.

Diversity and Evolution of an Abundant ICEclc-Family of Integrative and Conjugative Elements in Pseudomonas aeruginosa

J. R. van der Meer, Nicolas Carraro, S. Romano-Bertrand, 2023, bioRxiv.

Transient Replication in Specialized Cells Favors Conjugative Transfer of a Selfish DNA Element

J. R. van der Meer, François Delavat, Roxane Moritz, 2018, bioRxiv.

Life History Analysis of Integrative and Conjugative Element Activation in Growing Microcolonies of Pseudomonas

J. R. van der Meer, Friedrich B M Reinhard, 2014, Journal of bacteriology.

A New Large-DNA-Fragment Delivery System Based on Integrase Activity from an Integrative and Conjugative Element

J. R. van der Meer, Ryo Miyazaki, 2013, Applied and Environmental Microbiology.

How can a dual oriT system contribute to efficient transfer of an integrative and conjugative element?

J. R. van der Meer, Ryo Miyazaki, 2011, Mobile Genetic Elements.

A new green fluorescent protein-based bacterial biosensor for analysing phenanthrene fluxes.

Jan Roelof van der Meer, R. Tecon, J. R. van der Meer, 2006, Environmental microbiology.

Genomic Islands Confer Heavy Metal Resistance in Mucilaginibacter kameinonensis and Mucilaginibacter rubeus Isolated from a Gold/Copper Mine

Q. Saquib, J. R. van der Meer, C. Rensing, 2018, Genes.

Cloning and characterization of the genes encoding nitrilotriacetate monooxygenase of Chelatobacter heintzii ATCC 29600

T. Egli, J. R. van der Meer, H. Knobel, 1996, Journal of bacteriology.

Bioluminescence-Triggered Photoswitchable Bacterial Adhesions enable Higher Sensitivity and Dual-readout Bacterial Biosensors for Mercury.

J. R. van der Meer, S. Wegner, Fei Chen, 2020, ACS sensors.

A flow cytometry based oligotrophic pollutant exposure test to detect bacterial growth inhibition and cell injury.

J. R. van der Meer, K. Czechowska, 2011, Environmental science & technology.

Probing chemotaxis activity in Escherichia coli using fluorescent protein fusions

J. R. van der Meer, Clémence Roggo, 2018, bioRxiv.

Complete alanine scanning of the Escherichia coli RbsB ribose binding protein reveals residues important for chemoreceptor signaling and periplasmic abundance

J. R. van der Meer, V. Sentchilo, S. Beggah, 2017, Scientific Reports.

Escherchia coli ribose binding protein based bioreporters revisited

Shantanu Roy, J. R. van der Meer, S. Yagur‐Kroll, 2014, Scientific Reports.

Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Chemotactic to Aromatic Compounds

R. Stocker, J. R. van der Meer, Nicolas Carraro, 2018, bioRxiv.

Effect of integration of a GFP reporter gene on fitness of Ralstonia eutropha during growth with 2,4-dichlorophenoxyacetic acid.

T. Egli, J. R. van der Meer, I. Rüegg, 2003, Environmental microbiology.

Response Characteristics of Arsenic-Sensitive Bioreporters Expressing the gfp Reporter Gene

J. R. van der Meer, H. Harms, Mona Wells, 2005 .

Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13

J. R. van der Meer, M. Minoia, David R. Johnson, 2010, BMC Microbiology.

Author Correction: Mechanistic insights into bacterial metabolic reprogramming from omics-integrated genome-scale models

Anush Chiappino-Pepe, J. R. van der Meer, V. Sentchilo, 2020, npj Systems Biology and Applications.

Bioremediation, a broad perspective

T. Wood, J. R. van der Meer, P. van Dillewijn, 2009, Microbial biotechnology.

Design of new promoters and of a dual-bioreporter based on cross-activation by the two regulatory proteins XylR and HbpR.

Jan Roelof van der Meer, J. R. van der Meer, D. Tropel, 2004, Environmental microbiology.

Unusual location of two nearby pairs of upstream activating sequences for HbpR, the main regulatory protein for the 2-hydroxybiphenyl degradation pathway of "Pseudomonas azelaica" HBP1.

J. R. van der Meer, M. Jaspers, M. Sturme, 2001, Microbiology.

Compact portable biosensor for arsenic detection in aqueous samples with Escherichia coli bioreporter cells.

Jan Roelof van der Meer, Martial Geiser, Frederic Truffer, 2014, The Review of scientific instruments.

Transcriptome analysis of the mobile genome ICEclc in Pseudomonas knackmussii B13

J. R. van der Meer, M. Minoia, David R. Johnson, 2010, BMC Microbiology.

Miniaturized electrochemical biosensor based on whole‐cell for heavy metal ions detection in water

J. R. van der Meer, S. Petralia, E. Sciuto, 2020, Biotechnology and bioengineering.

Heterologous Expression of Pseudomonas putida Methyl-Accepting Chemotaxis Proteins Yields Escherichia coli Cells Chemotactic to Aromatic Compounds

R. Stocker, J. R. van der Meer, Nicolas Carraro, 2018, Applied and Environmental Microbiology.

Probing chemotaxis activity in Escherichia coli using fluorescent protein fusions

J. R. van der Meer, Nicolas Carraro, Clémence Roggo, 2019, Scientific Reports.

Probing chemotaxis activity in Escherichia coli using fluorescent protein fusions

J. R. van der Meer, Clémence Roggo, 2018, bioRxiv.

Miniaturized and integrated whole cell living bacterial sensors in field applicable autonomous devices.

J. R. van der Meer, Clémence Roggo, 2017, Current opinion in biotechnology.

A dual functional origin of transfer in the ICEclc genomic island of Pseudomonas knackmussii B13

J. R. van der Meer, Ryo Miyazaki, 2011, Molecular microbiology.

Prospects for harnessing biocide resistance for bioremediation and detoxification

H. Heipieper, S. Atashgahi, A. Stams, 2018, Science.

Impact of mycelia on the accessibility of fluorene to PAH-degrading bacteria.

R. Tecon, J. R. van der Meer, H. Harms, 2013, Environmental science & technology.