D. Wells

发表

Characterization of Pearl Millet Root Architecture and Anatomy Reveals Three Types of Lateral Roots

Beatriz Moreno Ortega, Y. Guédon, S. Passot, 2016, Front. Plant Sci..

From jellyfish to biosensors: the use of fluorescent proteins in plants.

D. Wells, U. Voß, A. Larrieu, 2013, The International journal of developmental biology.

Field Phenotyping for the Future

J. Atkinson, D. Wells, A. Bentley, 2018, Annual Plant Reviews online.

Approaches to three-dimensional reconstruction of plant shoot topology and geometry.

Michael P. Pound, A. French, T. Pridmore, 2016, Functional plant biology : FPB.

X-Ray Computed Tomography of Crop Plant Root Systems Grown in Soil.

S. Mooney, T. Pridmore, M. Bennett, 2017, Current protocols in plant biology.

Systems Analysis of Auxin Transport in the Arabidopsis Root Apex[W][OPEN]

Michael P. Pound, John A. Fozard, Michael H. Wilson, 2014, Plant Cell.

Shaping 3D Root System Architecture

S. Mooney, M. Bennett, D. Wells, 2017, Current Biology.

The circadian clock rephases during lateral root organ initiation in Arabidopsis thaliana

Michael H. Wilson, Fiona C. Robertson, K. Ljung, 2015, Nature Communications.

Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending

Michael H. Wilson, A. French, T. Pridmore, 2014, The New phytologist.

Root hydrotropism is controlled via a cortex-specific growth mechanism

John A. Fozard, S. Mooney, M. Owen, 2017, Nature Plants.

Branching Out in Roots: Uncovering Form, Function, and Regulation1

S. Mooney, J. Atkinson, M. Bennett, 2014, Plant Physiology.

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence

M. Owen, A. French, T. Pridmore, 2013, Molecular systems biology.

Auxin regulates aquaporin function to facilitate lateral root emergence

John R. King, Darren M. Wells, Oliver E. Jensen, 2012, Nature Cell Biology.

Recovering the dynamics of root growth and development using novel image acquisition and analysis methods

Tony P. Pridmore, Andrew P. French, Omer Ishaq, 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.

X‐ray CT reveals 4D root system development and lateral root responses to nitrate in soil

Michael P. Pound, S. Mooney, T. Pridmore, 2022, The Plant Phenome Journal.

Recovering the dynamics of root growth and development using novel image acquisition and analysis methods

A. French, T. Pridmore, Asad Naeem, 2012, Philosophical Transactions of the Royal Society B: Biological Sciences.

CellSeT: Novel Software to Extract and Analyze Structured Networks of Plant Cells from Confocal Images[W]

Tony P. Pridmore, Michael P. Pound, Andrew P. French, 2012, Plant Cell.

An Updated Protocol for High Throughput Plant Tissue Sectioning

Darren M. Wells, Jonathan A. Atkinson, J. Atkinson, 2017, Front. Plant Sci..

Quiescent center initiation in the Arabidopsis lateral root primordia is dependent on the SCARECROW transcription factor

S. Guyomarc’h, M. Bennett, D. Wells, 2016, Development.

Quantification of fluorescent reporters in plant cells.

Michael P. Pound, A. French, D. Wells, 2015, Methods in molecular biology.

A novel sensor to map auxin response and distribution at high spatio-temporal resolution

Tom Beeckman, Teva Vernoux, Vincent Mirabet, 2012, Nature.

Root Gravitropism: Quantification, Challenges, and Solutions.

M. Bennett, D. Wells, R. Swarup, 2018, Methods in molecular biology.

Combining semi-automated image analysis techniques with machine learning algorithms to accelerate large scale genetic studies

Darren M. Wells, Guillaume Lobet, Jonathan A. Atkinson, 2017, bioRxiv.

Nitrate transport and signalling.

D. Wells, Susan J. Smith, A. Miller, 2007, Journal of experimental botany.

Electrochemical Methods and Measuring Transmembrane Ion Gradients

D. Wells, A. Miller, 2006 .

Preparation, Scanning and Analysis of Duckweed Using X-Ray Computed Microtomography

D. Wells, C. Sturrock, B. Atkinson, 2021, Frontiers in Plant Science.

Phenotyping pipeline reveals major seedling root growth QTL in hexaploid wheat

Michael P. Pound, Darren M. Wells, Simon Griffiths, 2015, Journal of experimental botany.

Identification of QTL and Underlying Genes for Root System Architecture associated with Nitrate Nutrition in Hexaploid Wheat

Michael P. Pound, Michael H. Wilson, J. Atkinson, 2019, bioRxiv.

Linear discriminant analysis reveals differences in root architecture in wheat seedlings related to nitrogen uptake efficiency

I. Dryden, J. Atkinson, M. Bennett, 2017, Journal of experimental botany.

Novel sensors for measuring soil nitrogen, water availability and strength.

L. J. Clark, W. R. Whalley, D. Wells, 2003 .

Traffic exposure increases natural 15N and heavy metal concentrations in mosses

D. Wells, A. Bennett, M. Ingrouille, 2000 .

Feeling UPBEAT about growth: linking ROS gradients and cell proliferation.

Michael H. Wilson, M. Bennett, D. Wells, 2010, Developmental cell.

Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

K. Ljung, A. Hartmann, M. Bennett, 2018, Nature Communications.

A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

K. Ljung, A. Hartmann, M. Bennett, 2018, Nature Communications.

Systems approaches reveal that ABCB and PIN proteins mediate co-dependent auxin efflux

M. Bennett, D. Wells, U. Voß, 2022, The Plant cell.

Intracellular measurement of ammonium in Chara corallina using ion-selective microelectrodes

D. Wells, A. Miller, 2000, Plant and Soil.

The auxin signalling network translates dynamic input into robust patterning at the shoot apex

Christophe Godin, Etienne Farcot, Jonathan Legrand, 2011, Molecular systems biology.

Plant Phenotyping: An Active Vision Cell for Three-Dimensional Plant Shoot Reconstruction1[OPEN]

Michael P. Pound, Tony Pridmore, Darren M Wells, 2018, Plant Physiology.

Uncovering the hidden half of plants using new advances in root phenotyping

Michael P. Pound, Jonathan A Atkinson, Darren M Wells, 2019, Current opinion in biotechnology.

Auxin fluxes through plasmodesmata modify root-tip auxin distribution

M. Bennett, D. Wells, U. Voß, 2020, Development.

Root gravitropism is regulated by a transient lateral auxin gradient controlled by a tipping-point mechanism

Kris Vissenberg, Tom Beeckman, Teva Vernoux, 2012, Proceedings of the National Academy of Sciences.

Biosensors for phytohormone quantification: challenges, solutions, and opportunities.

M. Bennett, D. Wells, L. Laplaze, 2013, Trends in plant science.

Update on Root Branching Branching Out in Roots : Uncovering Form , Function , and Regulation 1

S. Mooney, J. Atkinson, M. Bennett, 2014 .

Identification of nitrogen-dependent QTL and underlying genes for root system architecture in hexaploid wheat

Michael P. Pound, Michael H. Wilson, J. Atkinson, 2019 .

The use of microelectrodes to investigate compartmentation and the transport of metabolized inorganic ions in plants.

D. Wells, S. Cookson, S. J. Smith, 2001, Journal of experimental botany.

MicroFilament Analyzer, an image analysis tool for quantifying fibrillar orientation, reveals changes in microtubule organization during gravitropism.

Kris Vissenberg, Darren M Wells, Joris Dirckx, 2013, The Plant journal : for cell and molecular biology.

Glutaredoxin regulation of primary root growth confers early drought stress tolerance in pearl millet

Y. Guédon, S. Passot, S. Guyomarc’h, 2023, bioRxiv.

Deep machine learning provides state-of-the-art performance in image-based plant phenotyping

Tony P. Pridmore, Michael P. Pound, Andrew P. French, 2016, bioRxiv.

Sensing the physical and nutritional status of the root environment in the field: a review of progress and opportunities

Andrew P. Whitmore, Darren M. Wells, R. M. Lark, 2005, The Journal of Agricultural Science.

RootNav 2.0: Deep learning for automatic navigation of complex plant root architectures

Tony P. Pridmore, Michael P. Pound, Darren M. Wells, 2019, bioRxiv.

MALDI-MSI: a new tool for metab olite analysis in forensic science

Darren M. Wells, Simona Francese, Malcolm R. Clench, 2014 .

Root system size and root hair length are key phenes for nitrate acquisition and biomass production across natural variation in Arabidopsis.

D. Inzé, M. Bennett, D. Wells, 2022, Journal of experimental botany.

Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation

J. Atkinson, D. Wells, J. Gray, 2019, Scientific Reports.

Deep Learning for Multi-task Plant Phenotyping

Tony P. Pridmore, Michael P. Pound, Andrew P. French, 2017, bioRxiv.

Dual expression and anatomy lines allow simultaneous visualization of gene expression and anatomy

Paul T. Tarr, J. Atkinson, D. Wells, 2021, Plant Physiology.

Loss of ancestral function in duckweed roots is accompanied by progressive anatomical reduction and a re-distribution of nutrient transporters

J. Atkinson, D. Wells, L. Yant, 2023, Current Biology.

Laboratory and field techniques for measuring root distribution and architecture.

S. Mooney, T. Pridmore, M. Bennett, 2015 .

Active Vision and Surface Reconstruction for 3D Plant Shoot Modelling

Michael P. Pound, Jonathon Ashley Gibbs, Tony Pridmore, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Multi-omics analysis identifies genes mediating the extension of cell walls in the Arabidopsis thaliana root elongation zone

Kris Vissenberg, Darren M. Wells, Michael H. Wilson, 2015, Front. Cell Dev. Biol..

RootNav: Navigating Images of Complex Root Architectures1[C][W]

Michael P. Pound, Andrew P. French, Darren M. Wells, 2013, Plant Physiology.

Loss of ancestral function in duckweed roots is accompanied by progressive anatomical reduction and a re-distribution of nutrient transporters

J. Atkinson, D. Wells, L. Yant, 2023, Current Biology.

Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape

Michael H. Wilson, A. French, T. Pridmore, 2012, Plant Methods.

Bioinformatics Applications Note Systems Biology High-throughput Feature Counting and Measurement of Roots

Tony P. Pridmore, Andrew P. French, Darren M. Wells, 2022 .

Positioning the Root Elongation Zone Is Saltatory and Receives Input from the Shoot

T. Baskin, M. Bennett, D. Wells, 2020, iScience.

Tissue-level segmentation and tracking of cells in growing plant roots

Tony P. Pridmore, Andrew P. French, Darren M. Wells, 2012, Machine Vision and Applications.

Identifying biological landmarks using a novel cell measuring image analysis tool: Cell-o-Tape

Michael H Wilson, Tony P Pridmore, Darren M Wells, 2012, Plant Methods.

A European perspective on opportunities and demands for field-based crop phenotyping

Emilie J. Millet, O. Muller, D. Wells, 2022, Field Crops Research.

Low-Cost Automated Vectors and Modular Environmental Sensors for Plant Phenotyping

Stuart A Bagley, Jonathan A Atkinson, Henry Hunt, 2020, Sensors.

Non-invasive hydrodynamic imaging in plant roots at cellular resolution

C. Maurel, X. Draye, M. Bennett, 2021, Nature Communications.

Mechanical properties of epidermal cells of whole living roots of Arabidopsis thaliana: an atomic force microscopy study.

Clive J Roberts, Darren M Wells, D. Wells, 2012, Physical review. E, Statistical, nonlinear, and soft matter physics.

Chlorophyll fluorescence-based high-throughput phenotyping facilitates the genetic dissection of photosynthetic heat tolerance in African (Oryza glaberrima) and Asian (Oryza sativa) rice

J. Atkinson, D. Wells, A. Price, 2023, Journal of experimental botany.

Sequential induction of auxin efflux and influx carriers regulates lateral root emergence

M. Owen, A. French, T. Pridmore, 2013 .

Breakthrough Technologies RootNav : Navigating Images of Complex Root Architectures 1 [ C ] [ W ]

Michael P. Pound, A. French, T. Pridmore, 2013 .

On the evaluation of methods for the recovery of plant root systems from X-ray computed tomography images.

Stefan Mairhofer, Craig Sturrock, Sacha J Mooney, 2015, Functional plant biology : FPB.

Rice plants overexpressing OsEPF1 show reduced stomatal density and increased root cortical aerenchyma formation

J. Atkinson, D. Wells, J. Gray, 2019, Scientific Reports.

Adding a Piece to the Leaf Epidermal Cell Shape Puzzle.

D. Wells, Daniel von Wangenheim, M. Bennett, 2017, Developmental cell.

Herbicide resistance in black nightshade and Onehunga weed.

D. Wells, K. Harrington, A. Ward, 2001 .

Finite element modelling of cell wall properties for onion epidermis using a fibre-reinforced hyperelastic model.

A. Becker, D. Wells, Arthur Jones, 2010, Journal of structural biology.

The mechanics of Arabidopsis seed germination

Michael H. Wilson, M. Holdsworth, D. Wells, 2007 .

Shaping 3D Root System Architecture

S. Mooney, D. Wells, J. Lynch, 2017, Current Biology.

Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending

John A. Fozard, Michael H. Wilson, A. French, 2014, The New phytologist.

University of Birmingham Mechanical modelling quantifies the functional importance of outer tissue layers during root elongation and bending

John A. Fozard, Michael H. Wilson, T. Pridmore, 2022 .

A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

K. Ljung, A. Hartmann, D. Wells, 2018, Nature Communications.

Abscisic acid controls root hydrotropism 1 via a cortex-specific growth regulatory mechanism 2

John A. Fozard, S. Mooney, T. Pridmore, 2020 .

Branching Out in Roots: Uncovering Form, Function, and Regulation1

S. Mooney, J. Atkinson, D. Wells, 2014, Plant Physiology.

Characterization of pearl millet root architecture and anatomy reveals three types of lateral roots. Frontiers

Beatriz Moreno Ortega, Y. Guédon, S. Passot, 2017 .

Characterization of pearl millet root architecture and anatomy 1 reveals three types of lateral roots 2

Beatriz Moreno Ortega, Y. Guédon, S. Passot, 2016 .

High-Throughput Quantification of Root Growth

Tony P. Pridmore, Darren M. Wells, Andrew P. French, 2012 .

Molecular Systems Biology Peer Review Process File Sequential Induction of Auxin Efflux and Influx Carriers Regulates Lateral Root Emergence Transaction Report

M. Owen, A. French, T. Pridmore, 2022 .

Nitrate transport and signalling.

D. Wells, Susan J. Smith, A. Miller, 2007, Journal of experimental botany.

From jellyfish to biosensors: the use of fluorescent proteins in plants.

D. Wells, U. Voß, Antoine Larrieu, 2013, The International journal of developmental biology.

(2017) Deep learning for multi-task plant phenotyping. In: ICCV 2017 International Conference on Computer Vision, 22-29 October, 2017, Venice, Italy

Michael P. Pound, A. French, T. Pridmore, 2017 .

Author Correction: A mechanistic framework for auxin dependent Arabidopsis root hair elongation to low external phosphate

K. Ljung, A. Hartmann, D. Wells, 2018, Nature Communications.

Imaging and quantitative methods for studying cytoskeletal rearrangements during root development and gravitropism.

D. Wells, E. Jacques, K. Vissenberg, 2015, Methods in molecular biology.