S. Tomić

发表

PSAIA – Protein Structure and Interaction Analyzer

M. Šikić, K. Vlahovicek, Josip Mihel, 2008, BMC Structural Biology.

In vitro antiproliferative study of novel adamantyl pyridin-4-ones

S. Tomić, T. Opačak-Bernardi, V. Petrović Peroković, 2017, Molecular Diversity.

COMBINE analysis of the specificity of binding of Ras proteins to their effectors

Ting Wang, Sanja Tomić, R. Wade, 2007, Proteins.

How optimal are the binding energetics of barnase and barstar?

Ting Wang, Rebecca C Wade, Sanja Tomic, 2004, Biophysical journal.

Ab initio RHF investigation of mono- and dichlorinated indole-3-acetic acid (IAA) phytohormones

Michael Ramek, Sanja Tomić, S. Tomić, 1998 .

Auxin activity and molecular structure of 2-alkylindole-3-acetic acids

S. Tomić, B. Kojić-Prodić, M. Ramek, 2004, Plant Growth Regulation.

Ab initio Hartree-Fock investigation of 1-H-pyrrolo[3,2-b]pyridine-3-yl acetic acid.

S. Tomić, M. Ramek, 2001, Spectrochimica acta. Part A, Molecular and biomolecular spectroscopy.

Structure/activity correlations for auxins

S. Tomić, B. Kojić-Prodić, B. Salopek-Sondi, 1999 .

Quantum chemical conformational analysis of the auxin phytohormone 4‐methyl‐3‐indole acetic acid

Michael Ramek, Sanja Tomić, S. Tomić, 1999 .

COMBINE analysis of nuclear receptor-DNA binding specificity: Comparison of two sets of data

R. Wade, S. Tomić, 2001 .

Oxidase or peptidase? A computational insight into a putative aflatoxin oxidase from Armillariella tabescens

S. Tomić, M. Tomin, 2019, Proteins.

Novel amino substituted tetracyclic imidazo[4,5-b]pyridine derivatives: Design, synthesis, antiproliferative activity and DNA/RNA binding study.

S. Tomić, M. Hranjec, M. Kralj, 2021, European journal of medicinal chemistry.

A novel Porphyromonas gingivalis enzyme: An atypical dipeptidyl peptidase III with an ARM repeat domain

S. Tomić, K. Gruber, M. Oberer, 2017, PloS one.

Pyrazolone-fused combretastatins and their precursors: synthesis, cytotoxicity, antitubulin activity and molecular modeling studies.

S. Tomić, M. Osmak, M. Kočevar, 2010, Bioorganic & medicinal chemistry.

Novel symmetric bis-benzimidazoles: Synthesis, DNA/RNA binding and antitrypanosomal activity.

S. Tomić, L. Krstulović, I. Stolić, 2019, European journal of medicinal chemistry.

Small molecule probes finely differentiate between various ds- and ss-DNA and RNA by fluorescence, CD and NMR response.

S. Tomić, J. Plavec, T. Deligeorgiev, 2016, Analytica chimica acta.

Sensing of Double-Stranded DNA/RNA Secondary Structures by Water Soluble Homochiral Perylene Bisimide Dyes.

S. Tomić, I. Piantanida, F. Würthner, 2015, Chemistry.

Kinetic differentiation between homo- and alternating AT DNA by sterically restricted phosphonium dyes.

S. Tomić, T. Deligeorgiev, A. Vasilev, 2012, Chemistry.

Guanidiniocarbonyl-pyrrole-aryl conjugates as inhibitors of human dipeptidyl peptidase III: combined experimental and computational study

S. Tomić, I. Piantanida, C. Schmuck, 2016 .

Molecular simulations reveal that the long range fluctuations of human DPP III change upon ligand binding.

R. Wade, S. Tomić, A. Tomić, 2015, Molecular bioSystems.

Importance of the three basic residues in the vicinity of the zinc-binding motifs for the activity of the yeast dipeptidyl peptidase III.

S. Tomić, M. Abramić, N. Jajčanin-Jozić, 2014, Journal of biochemistry.

Anilides and quinolones with nitrogen-bearing substituents from benzothiophene and thienothiophene series: synthesis, photochemical synthesis, cytostatic evaluation, 3D-derived QSAR analysis and DNA-binding properties.

S. Tomić, M. Kralj, G. Karminski-Zamola,, 2014, European journal of medicinal chemistry.

The guanidiniocarbonylpyrrole–fluorophore conjugates as theragnostic tools for dipeptidyl peptidase III monitoring and inhibition

I. Jerić, S. Tomić, I. Piantanida, 2019, Journal of biomolecular structure & dynamics.

Dke1—structure, dynamics, and function: a theoretical and experimental study elucidating the role of the binding site shape and the hydrogen-bonding network in catalysis

S. Tomić, H. Brkić, M. Ramek, 2012, JBIC Journal of Biological Inorganic Chemistry.

Neuropeptides, substrates and inhibitors of human dipeptidyl peptidase III, experimental and computational study - A new substrate identified.

L. Brkljacic, S. Tomić, Filip Šupljika, 2022, International journal of biological macromolecules.

Experimental and computational evaluation of dipeptidyl peptidase III inhibitors based on quinazolinone-Schiff’s bases

S. Tomić, D. Agić, D. Bešlo, 2022, Journal of biomolecular structure & dynamics.

Dke1—structure, dynamics, and function: a theoretical and experimental study elucidating the role of the binding site shape and the hydrogen-bonding network in catalysis

S. Tomić, H. Brkić, M. Ramek, 2012, JBIC Journal of Biological Inorganic Chemistry.

Combine and Free-Wilson QSAR Analysis of Nuclear Receptor-DNA Binding

R. Wade, L. Nilsson, S. Tomić, 2000 .

Identifying Protein Flexibility by NMA

Branko Jeren, Sanja Tomic, Kresimir Sikic, 2008, BIOCOMP.

Pyrimido-Pyrimidines: A Novel Class of Dihydrofolate Reductase Inhibitors

S. Tomić, M. Banjanac, Iva Tatić, 2009 .

Novel cyano- and amidinobenzothiazole derivatives: synthesis, antitumor evaluation, and X-ray and quantitative structure-activity relationship (QSAR) analysis.

S. Tomić, K. Pavelić, M. Kralj, 2009, Journal of medicinal chemistry.

Influence of the rigid spacer to macrocyclization of poly(thialactones): synthesis and computational analysis

S. Tomić, K. Mlinarić-Majerski, I. Vujasinović, 2009 .

A Quadrupolar Bis‐Triarylborane Chromophore as a Fluorimetric and Chirooptic Probe for Simultaneous and Selective Sensing of DNA, RNA and Proteins

S. Tomić, I. Piantanida, Stefanie Griesbeck, 2019, Chemistry.

Novel substituted benzothiophene and thienothiophene carboxanilides and quinolones: synthesis, photochemical synthesis, DNA-binding properties, antitumor evaluation and 3D-derived QSAR analysis.

Maja Aleksić, Sanja Tomić, Raja Nhili, 2012, Journal of medicinal chemistry.

QSAR analysis of antitumor active amides and quinolones from thiophene series.

S. Tomić, M. Aleksić, B. Bertoša, 2010, International journal of pharmaceutics.

Recognition of ATT Triplex and DNA:RNA Hybrid Structures by Benzothiazole Ligands

S. Tomić, Filip Šupljika, Lidija-Marija Tumir, 2022, Biomolecules.

The bis-phenanthridinium system flexibility and position of covalently bound uracil finely tunes the interaction with polynucleotides.

S. Tomić, I. Piantanida, Lidija-Marija Tumir, 2013, Molecular bioSystems.

The interactions of bis-phenanthridinium–nucleobase conjugates with nucleotides: adenine-conjugate recognizes UMP in aqueous medium

S. Tomić, I. Piantanida, Lidija-Marija Tumir, 2010 .

Aryl-bis-(scorpiand)-aza receptors differentiate between nucleotide monophosphates by a combination of aromatic, hydrogen bond and electrostatic interactions.

S. Tomić, I. Piantanida, E. Garcı́a-España, 2015, Organic & biomolecular chemistry.

Triarylborane Dyes as a Novel Non-Covalent and Non-Inhibitive Fluorimetric Markers for DPP III Enzyme

S. Tomić, I. Piantanida, H. Amini, 2021, Molecules.

Mechanism of auxin interaction with Auxin Binding Protein (ABP1): a molecular dynamics simulation study.

Rebecca C Wade, Biserka Kojić-Prodić, Branimir Bertosa, 2008, Biophysical journal.

Classification of auxin plant hormones by interaction property similarity indices

Razif R. Gabdoulline, Rebecca C. Wade, Sanja Tomic, 1998, J. Comput. Aided Mol. Des..

Comparative ab initio SCF conformational study of 4-chloro-indole-3-acetic acid and indole-3-acetic acid phytohormones (auxins)

Biserka Kojić-Prodić, Michael Ramek, Sanja Tomić, 1996 .

Auxin amidohydrolases from Brassica rapa cleave the alanine conjugate of indolepropionic acid as a preferable substrate: a biochemical and modeling approach.

K. Gruden, S. Tomić, J. Ludwig-Müller, 2009, Plant & cell physiology.

Complex of Burkholderia cepacia lipase with transition state analogue of 1-phenoxy-2-acetoxybutane: biocatalytic, structural and modelling study.

S. Tomić, W. Saenger, B. Kojić-Prodić, 2001, European journal of biochemistry.

Stereoselectivity of Burkholderia cepacia lipase towards secondary alcohols: molecular modelling and 3D QSAR approach

Biserka Kojić-Prodić, Sanja Tomić, S. Tomić, 2004 .

A quantitative model for predicting enzyme enantioselectivity: application to Burkholderia cepacia lipase and 3-(aryloxy)-1,2-propanediol derivatives.

Biserka Kojić-Prodić, Sanja Tomić, S. Tomić, 2002, Journal of molecular graphics & modelling.

Structural Studies on Monohalogenated Derivatives of the Phytohormone Indole-3-acetic Acid (Auxin)

Biserka Kojić-Prodić, Biljana Nigović, Sanja Tomić, 1996 .

Homooligomerization is needed for stability: a molecular modelling and solution study of Escherichia coli purine nucleoside phosphorylase

S. Tomić, B. Wielgus-Kutrowska, A. Bzowska, 2014, The FEBS journal.

The first dipeptidyl peptidase III from a thermophile: Structural basis for thermal stability and reduced activity

S. Tomić, M. Abramić, Iva Sučec, 2018, PLoS ONE.

Coumarin Derivatives Act as Novel Inhibitors of Human Dipeptidyl Peptidase III: Combined In Vitro and In Silico Study

S. Tomić, M. Lisjak, D. Agić, 2021, Pharmaceuticals.

Both SH2 Domains Are Involved in Interaction of SHP-1 with the Epidermal Growth Factor Receptor but Cannot Confer Receptor-directed Activity to SHP-1/SHP-2 Chimera*

A. Ullrich, S. Tomić, T. Tenev, 1997, The Journal of Biological Chemistry.

Combined X-ray diffraction and QM/MM study of the Burkholderia cepacia lipase-catalyzed secondary alcohol esterification.

D. Janežič, S. Tomić, M. Hodošček, 2008, The journal of physical chemistry. B.

In vitro antiproliferative study of novel adamantyl pyridin-4-ones

S. Tomić, T. Opačak-Bernardi, V. Petrović Peroković, 2017, Molecular Diversity.

Systematic Comparison of Crystal and NMR Protein Structures Deposited in the Protein Data Bank

Oliviero Carugo, Sanja Tomic, Kresimir Sikic, 2010, The open biochemistry journal.

The Large Scale Conformational Change of the Human DPP III-Substrate Prefers the "Closed" Form

Miguel González, Sanja Tomic, Antonija Tomic, 2012, J. Chem. Inf. Model..

Dynamic properties of dipeptidyl peptidase III from Bacteroides thetaiotaomicron and the structural basis for its substrate specificity - a computational study.

S. Tomić, M. Tomin, 2017, Molecular bioSystems.

SOCS-1, -2, -3: selective targets and functions downstream of the prolactin receptor

S. Tomić, S. Ali, N. Chughtai, 1999, Molecular and Cellular Endocrinology.

Binding behavior of amino acid conjugates of indole-3-acetic acid to immobilized human serum albumin.

S. Tomić, B. Bertoša, V. Magnus, 2007, Journal of chromatography. A.

Synthesis and conformational analysis of plant hormone (auxin) related compound 2-(indol-3-yl) ethyl β-d-galactopyranoside and its 2,3,4,6-tetra-O-acetyl derivative

H. Duddeck, S. Tomić, B. Kojić-Prodić, 1995 .

Synthesis and conformational analysis of 2-(indol-3-yl)ethyl α-l-arabinopyranoside and its 2,3,4-tri-O-acetyl derivative

H. Duddeck, S. Tomić, J. Kroon, 1994 .

New Zinc Ion Parameters Suitable for Classical MD Simulations of Zinc Metallopeptidases

Dejan Agić, Michael Ramek, Antonija Tomić, 2019, J. Chem. Inf. Model..

SHH-N non-canonically sustains androgen receptor activity in androgen-independent prostate cancer cells

S. Tomić, P. Ozretić, S. Levanat, 2021, Scientific Reports.

Metals in proteins: correlation between the metal-ion type, coordination number and the amino-acid residues involved in the coordination.

M. Šikić, Ivan Dokmanić, S. Tomić, 2008, Acta crystallographica. Section D, Biological crystallography.

Prediction of Protein–Protein Interaction Sites in Sequences and 3D Structures by Random Forests

Kristian Vlahovicek, Mile Sikic, Sanja Tomic, 2009, PLoS Comput. Biol..

Influence of Mutations of Conserved Arginines on Neuropeptide Binding in the DPP III Active Site

S. Tomić, A. Tomić, Zrinka Karačić, 2023, Molecules.

Demystifying DPP III Catalyzed Peptide Hydrolysis—Computational Study of the Complete Catalytic Cycle of Human DPP III Catalyzed Tynorphin Hydrolysis

S. Tomić, A. Tomić, 2022, International journal of molecular sciences.

Concerted nitrogen inversion and hydrogen bonding to Glu451 are responsible for protein-controlled suppression of the reverse reaction in human DPP III.

S. Tomić, B. Kovačević, A. Tomić, 2016, Physical chemistry chemical physics : PCCP.

Hunting the human DPP III active conformation: combined thermodynamic and QM/MM calculations.

S. Tomić, A. Tomić, 2014, Dalton transactions.

Fluorescent cyanine-guanidiniocarbonyl-pyrrole conjugate with pH-dependent DNA/RNA recognition and DPP III fluorescent labelling and inhibition properties

S. Tomić, I. Piantanida, C. Schmuck, 2018, Monatshefte für Chemie - Chemical Monthly.

Interdisciplinary Study of the Effects of Dipeptidyl-Peptidase III Cancer Mutations on the KEAP1-NRF2 Signaling Pathway

S. Tomić, S. Sobočanec, M. Matovina, 2022, International journal of molecular sciences.

Human dipeptidyl peptidase III: insights into ligand binding from a combined experimental and computational approach

S. Tomić, D. Agić, M. Abramić, 2011, Journal of molecular recognition : JMR.

Conservation of the conformational dynamics and ligand binding within M49 enzyme family

S. Tomić, D. Agić, M. Dadlez, 2018, RSC advances.

New findings about human dipeptidyl peptidase III based on mutations found in cancer

S. Tomić, D. Agić, M. Abramić, 2017 .

Validation of flavonoids as potential dipeptidyl peptidase III inhibitors: Experimental and computational approach

S. Tomić, Marija Špoljarević, M. Lisjak, 2017, Chemical biology & drug design.

The Mechanism of Peptide Hydrolysis Catalysed by Dipeptidyl Peptidase III from Bacteroides thetaiotaomicron

S. Tomić, B. Kovačević, A. Tomić, 2018 .

Human DPP III – Keap1 Interactions : A Combined Experimental And Computational study

R. Wade, S. Tomić, Saša Kazazić, 2016 .

Quantum mechanical study of Burkholderia cepacia lipase enantioselectivity

S. Tomić, M. Ramek, 2006 .

Nuclear receptor-DNA binding specificity: A COMBINE and Free-Wilson QSAR analysis.

R C Wade, R. Wade, L. Nilsson, 2000, Journal of medicinal chemistry.

Enantioselectivity of the Pseudomonas cepacia lipase towards 2-methyl-3-(or 4)-arylalkanols: an approach based on stereoelectronic theory and the molecular modeling

S. Tomić, B. Kojić-Prodić, V. Sunjic, 2001 .

Binding of dipeptidyl peptidase III to the oxidative stress cell sensor Kelch-like ECH-associated protein 1 is a two-step process

S. Tomić, T. Madl, K. Gruber, 2020, Journal of biomolecular structure & dynamics.

BioMe: biologically relevant metals

Mile Sikic, Alan Tus, Alen Rakipovic, 2012, Nucleic Acids Res..

Human Dipeptidyl Peptidase III : the Role of Asn406 in Ligand Binding and Hydrolysis

S. Tomić, D. Agić, B. Salopek-Sondi, 2011 .

RHF conformational analysis of the auxin phytohormones n‐ethyl–indole‐3‐acetic acid (n=4, 5, 6)

Michael Ramek, Sanja Tomić, S. Tomić, 1998 .

Synthesis and conformational analysis of the plant hormone (auxin) related 2-(indol-3-yl)ethyl and 2-phenylethyl β-d-xylopyranosides and their 2,3,4-tri-O-acetyl derivatives

H. Duddeck, S. Tomić, J. Kroon, 1995 .

Human 3-hydroxyanthranilate 3,4-dioxygenase () dynamics and reaction, a multilevel computational study.

S. Tomić, B. Kovačević, H. Brkić, 2015, Molecular bioSystems.

Combined ab initio SCF and molecular mechanics studies of propionic and isobutyric acids and their indole derivatives related to the phytohormone auxin (indole-3-acetic acid)

Biserka Kojić-Prodić, Michael Ramek, Sanja Tomić, 1998 .

Mechanism and thermodynamics of ligand binding to auxin amidohydrolase

S. Tomić, M. Simunovic, B. Žagrović, 2011, Journal of molecular recognition : JMR.

Classification of auxin related compounds based on similarity of their interaction fields: extension to a new set of compounds.

R. Wade, R. Gabdoulline, S. Tomić, 1998 .

The first dipeptidyl peptidase III from a thermophile: Structural basis for thermal stability and reduced activity

S. Tomić, M. Abramić, Iva Sučec, 2018, PloS one.

Systematic ab initioSCF conformational analysis of indol-3-ylacetic acid phytohormone (auxin): Comparison with experiment and molecular mechanics calculations†

Biserka Kojić-Prodić, Michael Ramek, Sanja Tomić, 1995 .

Guanidiniocarbonyl-pyrrole-aryl conjugates as nucleic acid sensors: switch of binding mode and spectroscopic responses by introducing additional binding sites into the linker.

S. Tomić, I. Piantanida, M. Kralj, 2011, Organic & biomolecular chemistry.

A novel pyrene-guanidiniocarbonyl-pyrrole cation efficiently differentiates between ds-DNA and ds-RNA by two independent, sensitive spectroscopic methods.

S. Tomić, I. Piantanida, C. Schmuck, 2008, Bioorganic & medicinal chemistry letters.

Recognition of homo-polynucleotides containing adenine by a phenanthridinium bis-uracil conjugate in aqueous media.

S. Tomić, I. Piantanida, M. Žinić, 2005, Chemical communications.

Synthesis of phenanthridinium-bis-nucleobase conjugates, interactions with poly U, nucleotides and in vitro antitumour activity of mono- and bis-nucleobase conjugates.

S. Tomić, I. Piantanida, M. Kralj, 2006, European journal of medicinal chemistry.

Crystal and Molecular Structure of (4S,5S)-6-Ammonium-6-deoxy-3- O -ascorbate

S. Tomić, B. Kojić-Prodić, B. Šušković, 1991 .

The Protein Secondary Structure Flexibility

Branko Jeren, Sanja Tomic, Kresimir Sikic, 2008, BIOCOMP.

Identification of an Additional Metal-Binding Site in Human Dipeptidyl Peptidase III

S. Tomić, Filip Šupljika, Zrinka Karačić, 2023, International journal of molecular sciences.

Molecular simulations reveal that the long range fluctuations of human DPP III change upon ligand binding.

R. Wade, S. Tomić, A. Tomić, 2015, Molecular bioSystems.

Hunting the human DPP III active conformation: combined thermodynamic and QM/MM calculations.

S. Tomić, A. Tomić, 2014, Dalton transactions.

Structural studies on 5-(n-alkyl)-substituted derivatives of the plant hormone indole-3-acetic acid

S. Tomić, W. Duax, B. Kojić-Prodić, 1991 .

A single amino acid substitution affects the substrate specificity of the seryl-tRNA synthetase homologue.

S. Tomić, A. Maršavelski, Ivana Weygand-Đurašević, 2014, Molecular bioSystems.