Can Yang

Wanzeng Kong, Yanfang Long, Can Yang, 2019, 2019 IEEE International Conference on Computational Intelligence and Virtual Environments for Measurement Systems and Applications (CIVEMSA).

Ac-pca Adjusts for Confounding Variation in Transcriptome Data and Recovers the Anatomical Structure of Neocortex

John C. Duchi, W. Wong, Hongyu Zhao, 2022 .

A tissue-specific collaborative mixed model for jointly analyzing multiple tissues in transcriptome-wide association studies

Jian Huang, Yuling Jiao, Jin Liu, 2020, Nucleic acids research.

A tissue-specific collaborative mixed model for jointly analyzing multiple tissues in transcriptome-wide association studies

Jian Huang, Yuling Jiao, Jin Liu, 2019, bioRxiv.

Editorial: Genetic Pleiotropy in Complex Traits and Diseases

Can Yang, Yu-Fang Pei, Qian Xu, 2022, Frontiers in Genetics.

SNPHarvester :a filte ring-base dapproac hfo rdetecting epistati cinteraction si ngenome-wid eassociatio nstudies

Qiang Yang, H. Xue, Zengyou He, 2008 .

Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information

Chao Yang, Zengyou He, Can Yang, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A regularized method for peptide quantification.

Can Yang, Weichuan Yu, Chao Yang, 2010, Journal of proteome research.

A tissue-speciﬁc collaborative mixed model for jointly analyzing multiple tissues in transcriptome-wide association studies

Yuling Jiao, Can Yang, Xingjie Shi, 2020 .

SNPHarvester: a ﬁltering-based approach for detecting epistatic interactions in genome-wide association studies

H. Xue, Zengyou He, X. Wan, 2009 .

BIOINFORMATICS Predictive rule inference for epistatic interaction detection in genome-wide association studies

Qiang Yang, X. Wan, Can Yang, 2022 .

XPXP: improving polygenic prediction by cross-population and cross-phenotype analysis

X. Wan, Can Yang, Gang Chen, 2022, Bioinform..

Improving genetic risk prediction by leveraging pleiotropy

Hongyu Zhao, J. Gelernter, Can Yang, 2013, Human Genetics.

Genome-wide Association Study Identifies New Susceptibility Loci for Posttraumatic Stress Disorder

Hongyu Zhao, L. Farrer, J. Gelernter, 2013, Biological Psychiatry.

Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso

Qiang Yang, Can Yang, Xiang Wan, 2010, BMC Bioinformatics.

Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation

Xiaowei Zhou, Can Yang, Weichuan Yu, 2011, IEEE Transactions on Pattern Analysis and Machine Intelligence.

Efficient Drug-Pathway Association Analysis via Integrative Penalized Matrix Decomposition

Hongyu Zhao, Can Yang, Cong Li, 2016, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Mendelian randomization for causal inference accounting for pleiotropy and sample structure using genome-wide summary statistics

Hongyu Zhao, Yang Wang, Heng Peng, 2022, bioRxiv.

MR-APSS: a unified approach to Mendelian Randomization accounting for pleiotropy and sample structure using genome-wide summary statistics

Hongyu Zhao, Yang Wang, Heng Peng, 2021 .

Bayesian weighted Mendelian randomization for causal inference based on summary statistics

Can Yang, Jingsi Ming, Jia Zhao, 2018, Bioinform..

LPM: a latent probit model to characterize the relationship among complex traits using summary statistics from multiple GWASs and functional annotations.

Tao Wang, Can Yang, Jingsi Ming, 2019, Bioinformatics.

VIMCO: variational inference for multiple correlated outcomes in genome-wide association studies

Yi Yang, Jin Liu, Can Yang, 2018, Bioinform..

LPM: a latent probit model to characterize the relationship among complex traits using summary statistics from multiple GWASs and functional annotations

Jingsi Ming, Tao Wang, Can Yang, 2018, bioRxiv.

LLR: a latent low‐rank approach to colocalizing genetic risk variants in multiple GWAS

Chao Yang, Jin Liu, Xiaowei Zhou, 2017, Bioinform..

EPS: an empirical Bayes approach to integrating pleiotropy and tissue-specific information for prioritizing risk genes

Jin Liu, Can Yang, Xiang Wan, 2016, Bioinform..

Implications of pleiotropy: challenges and opportunities for mining Big Data in biomedicine

Qian Wang, Can Yang, Hongyu Zhao, 2015, Front. Genet..

Mediated pleiotropy between psychiatric disorders and autoimmune disorders revealed by integrative analysis of multiple GWAS

Can Yang, Qian Wang, Hongyu Zhao, 2015, bioRxiv.

Leveraging the local genetic structure for trans-ancestry association mapping

X. Wan, Can Yang, Gang Chen, 2022, bioRxiv.

Adversarial domain translation networks for fast and accurate integration of large-scale atlas-level single-cell datasets

Gefei Wang, Yang Wang, A. Wu, 2021, bioRxiv.

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge

Adam P. DeLuca, Matthew S. Lebo, Janeen L Andorf, 2014, Genome Biology.

An international effort towards developing standards for best practices in analysis, interpretation and reporting of clinical genome sequencing results in the CLARITY Challenge

Daniel Nilsson, Peter Szolovits, Karen Eilbeck, 2014, Genome Biology.

CoMM: a collaborative mixed model to dissecting genetic contributions to complex traits by leveraging regulatory information

Jin Liu, Xiang Zhou, Can Yang, 2018, Bioinform..

CoMM-S2: a collaborative mixed model using summary statistics in transcriptome-wide association studies

Yi Yang, Xiang Zhou, Lei Sun, 2019, bioRxiv.

FIRM: Fast Integration of single-cell RNA-sequencing data across Multiple platforms

Xiang Wan, Can Yang, Zhixiang Lin, 2020 .

Tabula Microcebus: A transcriptomic cell atlas of mouse lemur, an emerging primate model organism

N. Neff, L. Penland, I. Weissman, 2021, bioRxiv.

Using Collaborative Mixed Models to Account for Imputation Uncertainty in Transcriptome-Wide Association Studies.

Jin Liu, Can Yang, Xingjie Shi, 2021, Methods in molecular biology.

LEP: A Statistical Method Integrating Individual-Level and Summary-Level Data of the Same Trait From Different Populations

Can Yang, Jin Liu, Mingwei Dai, 2019, Biomedical informatics insights.

Joint analysis of individual-level and summary-level GWAS data by leveraging pleiotropy

Jin Liu, Zongben Xu, Can Yang, 2018, Bioinform..

Accurate genetic and environmental covariance estimation with composite likelihood in genome-wide association studies

Xiaoping Zhou, Jin Liu, Can Yang, 2021, PLoS genetics.

Direct-to-consumer genetic testing in China and its role in GWAS discovery and replication

Can Yang, Xiaotian Yao, Senwei Tang, 2020, Quantitative Biology.

FIRM: Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets

A. Wu, X. Wan, Can Yang, 2020, bioRxiv.

Prediction analysis for microbiome sequencing data

Tao Wang, Can Yang, Hongyu Zhao, 2017, Biometrics.

The choice of null distributions for detecting gene-gene interactions in genome-wide association studies

Qiang Yang, Zengyou He, Can Yang, 2011, BMC Bioinformatics.

MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study

Qiang Yang, Can Yang, Xiang Wan, 2009, BMC Bioinformatics.

BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies

Qiang Yang, Can Yang, Xiang Wan, 2010, American journal of human genetics.

On high-dimensional misspecified mixed model analysis in genome-wide association study

Can Yang, Debashis Paul, Hongyu Zhao, 2016 .

High-dimensional genome-wide association study and misspecified mixed model analysis

Can Yang, Debashis Paul, Hongyu Zhao, 2014, 1404.2355.

Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies

Can Yang, Xiangyu Luo, Yingying Wei, 2018, Nature Communications.

Simultaneous dimension reduction and adjustment for confounding variation

Can Yang, Bai Jiang, Yong Wang, 2016, Proceedings of the National Academy of Sciences.

A unified framework for cross-population trait prediction by leveraging the genetic correlation of polygenic traits.

Hongyu Zhao, X. Wan, Can Yang, 2021, American journal of human genetics.

Detection of cell-type-specific risk-CpG sites in epigenome-wide association studies

Can Yang, Xiangyu Luo, Yingying Wei, 2018, bioRxiv.

Testing and controlling for horizontal pleiotropy with probabilistic Mendelian randomization in transcriptome-wide association studies

Xiang Zhou, Can Yang, Ping Zeng, 2019, Nature Communications.

Identifying disease-associated SNP clusters via contiguous outlier detection

Qiang Yang, Xiaowei Zhou, Can Yang, 2011, Bioinform..

Exploring the Relationship Between Psychiatric Traits and the Risk of Mouth Ulcers Using Bi-Directional Mendelian Randomization

Chaolong Wang, Can Yang, Kai Wang, 2020, Frontiers in Genetics.

IGREX for quantifying the impact of genetically regulated expression on phenotypes

Lin S. Chen, Jin Liu, Can Yang, 2019, bioRxiv.

Accounting for non-genetic factors by low-rank representation and sparse regression for eQTL mapping

Lin Wang, Hongyu Zhao, Can Yang, 2013, Bioinform..

Visualizing Emotional States: A Method Based on Human Brain Activity

Wanzeng Kong, Yanfang Long, Xuanyu Jin, 2019, HBAI@IJCAI.

HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies

Qiang Yang, Hongyu Zhao, Can Yang, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Exploring the Genetic Patterns of Complex Diseases via the Integrative Genome-Wide Approach

Jiming Liu, Can Yang, Xiang Wan, 2015, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

BOLT-SSI: A Statistical Approach to Screening Interaction Effects for Ultra-High Dimensional Data

Heng Peng, Jin Liu, Can Yang, 2019, Statistica Sinica.

GPC Algorithm and Queuing-selecting for Networked Level Control

Wanzeng Kong, Shan-an Zhu, Can Yang, 2007, 2007 IEEE International Conference on Control and Automation.

A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data

Zengyou He, Can Yang, Weichuan Yu, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Motif-All: discovering all phosphorylation motifs

Zengyou He, Ning Li, Can Yang, 2011, BMC Bioinformatics.

Predictive rule inference for epistatic interaction detection in genome-wide association studies

Qiang Yang, Can Yang, Xiang Wan, 2010, Bioinform..

SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies

Qiang Yang, Zengyou He, Can Yang, 2009, Bioinform..

Exploring the genetic architecture of alcohol dependence in African-Americans via analysis of a genomewide set of common variants

Hongyu Zhao, L. Farrer, J. Gelernter, 2014, Human Genetics.

Automatic mitral leaflet tracking in echocardiography by outlier detection in the low-rank representation

Xiaowei Zhou, Can Yang, Weichuan Yu, 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies

Can Yang, Xiang Wan, Weichuan Yu, 2011, Bioinform..

Identification of methylation quantitative trait loci (mQTLs) influencing promoter DNA methylation of alcohol dependence risk genes

Hongyu Zhao, Zuoheng Wang, J. Gelernter, 2014, Human Genetics.

ProteinLasso: A Lasso regression approach to protein inference problem in shotgun proteomics

Zengyou He, Can Yang, Ting Huang, 2013, Comput. Biol. Chem..

PALM: A Powerful and Adaptive Latent Model for Prioritizing Risk Variants with Functional Annotations

Yuling Jiao, X. Wan, Can Yang, 2023, Bioinformatics.

LSMM: a statistical approach to integrating functional annotations with genome-wide association studies

Jin Liu, Can Yang, Xiang Wan, 2017, Bioinform..

Detecting two-locus associations allowing for interactions in genome-wide association studies

Qiang Yang, Can Yang, Xiang Wan, 2010, Bioinform..

Comments on 'An empirical comparison of several recent epistatic interaction detection methods'

Can Yang, Xiang Wan, Weichuan Yu, 2012, Bioinform..

Multisample aCGH Data Analysis via Total Variation and Spectral Regularization

Hongyu Zhao, Xiaowei Zhou, Can Yang, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Empirical Bayes Correction for the Winner's Curse in Genetic Association Studies

Hongyu Zhao, Can Yang, John P Ferguson, 2013, Genetic epidemiology.

On joint estimation of Gaussian graphical models for spatial and temporal data

Tao Wang, Can Yang, Hongyu Zhao, 2015, Biometrics.

A hidden two-locus disease association pattern in genome-wide association studies

Qiang Yang, Can Yang, Xiang Wan, 2011, BMC Bioinformatics.

IGESS: a statistical approach to integrating individual‐level genotype data and summary statistics in genome‐wide association studies

Jin Liu, Zongben Xu, Can Yang, 2017, Bioinform..

Learning Hybrid Representations for Automatic 3D Vessel Centerline Extraction pdf

Yang Wang, Xiaowei Zhou, Yizhou Yu, 2020, MICCAI.

SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies

Qiang Yang, H. Xue, Zengyou He, 2009, Bioinform..

Bayesian weighted Mendelian randomization for causal inference based on summary statistics

Jin Liu, Can Yang, Gang Chen, 2018, Bioinform..

PALM: a powerful and adaptive latent model for prioritizing risk variants with functional annotations

Yuling Jiao, X. Wan, Can Yang, 2023, Bioinformatics.

BIVAS: A Scalable Bayesian Method for Bi-Level Variable Selection With Applications

Jin Liu, Can Yang, Mingwei Dai, 2018, Journal of Computational and Graphical Statistics.

Analyzing Association Mapping in Pedigree‐Based GWAS Using a Penalized Multitrait Mixed Model

Jin Liu, Can Yang, Jian Huang, 2016, Genetic epidemiology.

A penalized linear mixed model for genomic prediction using pedigree structures

Can Yang, Hongyu Zhao, Mengjie Chen, 2014, BMC Proceedings.