Weichuan Yu

发表

The complete compositional epistasis detection in genome-wide association studies

Hongyu Zhao, Qiang Yang, X. Wan, 2013, BMC Genetics.

Rotated wedge averaging method for junction characterization

Weichuan Yu, Gerald Sommer, Kostas Daniilidis, 1998, Proceedings. 1998 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Cat. No.98CB36231).

In planta chemical cross‐linking and mass spectrometry analysis of protein structure and interaction in Arabidopsis

Weichuan Yu, Fengchao Yu, Xinliang Zhu, 2016, Proteomics.

Development of in Planta Chemical Cross-Linking-Based Quantitative Interactomics in Arabidopsis.

Weichuan Yu, S. Du, Fengchao Yu, 2018, Journal of proteome research.

Using skew gabor filter in source signal separation and local spectral multi-orientation analysis

Kostas Daniilidis, G. Sommer, Weichuan Yu, 2004, CVPR 2004.

Low-Rank Adaptive Clutter Filtering for Robust Ultrasound Vector Flow Imaging

Weichuan Yu, Mengyi Zhang, Yigang Du, 2018, 2018 IEEE International Ultrasonics Symposium (IUS).

Jointly determining significance levels of primary and replication studies by controlling the false discovery rate in two-stage genome-wide association studies

Wei Jiang, Weichuan Yu, 2017, Statistical methods in medical research.

SNPHarvester : a filtering method for detecting epistatic interactions in genome-wide association studies

Qiang Yang, H. Xue, Zengyou He, 2008 .

Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach

Hongyu Zhao, Weichuan Yu, Baolin Wu, 2006, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Bioinformatic analysis of data generated from MALDI mass spectrometry for biomarker discovery.

Zengyou He, Weichuan Yu, R. Qi, 2013, Topics in current chemistry.

Data imbalance in CRISPR off-target prediction

Qi Liu, Weichuan Yu, Shen Qu, 2019, Briefings Bioinform..

Automatic Detection of 3D Joint Erosion in Hand HR-pQCT: A Level Set-Based Approach

Weichuan Yu, Chenrui Li, Xuechen Zhang, 2021 .

Statistical Issues in Using Mass Spectra for Disease Classification

Hongyu Zhao, Baolin Wu, K. Williams, 2004 .

Establishment of Dimethyl Labeling-based Quantitative Acetylproteomics in Arabidopsis *

Weichuan Yu, Caren Chang, Fengchao Yu, 2018, Molecular & Cellular Proteomics.

SNPHarvester :a filte ring-base dapproac hfo rdetecting epistati cinteraction si ngenome-wid eassociatio nstudies

Qiang Yang, H. Xue, Zengyou He, 2008 .

A Recombination Hotspot in a Schizophrenia-Associated Region of GABRB2

Qiang Yang, H. Xue, Weichuan Yu, 2010, PloS one.

Automatic Detection of 3D Joint Erosion in Hand HR-pQCT: A Level Set-Based Approach

Weichuan Yu, Chenrui Li, Xuechen Zhang, 2021 .

Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information

Chao Yang, Zengyou He, Can Yang, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

A regularized method for peptide quantification.

Can Yang, Weichuan Yu, Chao Yang, 2010, Journal of proteome research.

Image-based Quality Assessment of Middle Cerebral Artery Occlusion using SIFT Descriptor and Support Vector Machine

Huafeng Liu, Weichuan Yu, Chenrui Li, 2020 .

Detection of Structural Variations and Fusion Genes in Breast Cancer Samples Using Third-Generation Sequencing

Toyotaka Ishibashi, Weichuan Yu, Xiaodan Fan, 2021, Frontiers in Cell and Developmental Biology.

Capturing the Hierarchically Assorted Modules of Protein Interaction in the Organized Nucleome

A. Burlingame, G. Zhu, Weichuan Yu, 2022, bioRxiv.

SNPHarvester: a ﬁltering-based approach for detecting epistatic interactions in genome-wide association studies

H. Xue, Zengyou He, X. Wan, 2009 .

BIOINFORMATICS Predictive rule inference for epistatic interaction detection in genome-wide association studies

Qiang Yang, X. Wan, Can Yang, 2022 .

High-density lipoprotein subclasses and cardiovascular disease and mortality in type 2 diabetes: analysis from the Hong Kong Diabetes Biobank

R. Ozaki, A. Kong, W. So, 2022, Cardiovascular Diabetology.

Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso

Qiang Yang, Can Yang, Xiang Wan, 2010, BMC Bioinformatics.

Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation

Xiaowei Zhou, Can Yang, Weichuan Yu, 2011, IEEE Transactions on Pattern Analysis and Machine Intelligence.

Low-Rank Modeling and Its Applications in Image Analysis

Hongyu Zhao, Xiaowei Zhou, Can Yang, 2014, ACM Comput. Surv..

Controlling the joint local false discovery rate is more powerful than meta‐analysis methods in joint analysis of summary statistics from multiple genome‐wide association studies

Wei Jiang, Weichuan Yu, Wei Jiang, 2016, Bioinform..

Low-rank modeling and its applications in medical image analysis

Xiaowei Zhou, Weichuan Yu, Weichuan Yu, 2013, Defense, Security, and Sensing.

Isotopically Dimethyl Labeling-Based Quantitative Proteomic Analysis of Phosphoproteomes of Soybean Cultivars

A. Burlingame, Weichuan Yu, Fengchao Yu, 2021, Biomolecules.

The choice of null distributions for detecting gene-gene interactions in genome-wide association studies

Qiang Yang, Zengyou He, Can Yang, 2011, BMC Bioinformatics.

MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study

Qiang Yang, Can Yang, Xiang Wan, 2009, BMC Bioinformatics.

BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies

Qiang Yang, Can Yang, Xiang Wan, 2010, American journal of human genetics.

A network approach to exploring the functional basis of gene‐gene epistatic interactions in disease susceptibility

Wei Jiang, Weichuan Yu, Nelson L. S. Tang, 2018, Bioinform..

Semi-supervised protein subcellular localization

Qiang Yang, Weichuan Yu, Hong Xue, 2009, BMC Bioinformatics.

Piecewise-constant and low-rank approximation for identification of recurrent copy number variations

Jiming Liu, Xiaowei Zhou, Xiang Wan, 2014, Bioinform..

Development of genome-wide polygenic risk scores for lipid traits and clinical applications for dyslipidemia, subclinical atherosclerosis, and diabetes cardiovascular complications among East Asians

R. Ozaki, A. Kong, J. Chan, 2021, Genome medicine.

Exhaustive Cross-linking Search with Protein Feedback

Weichuan Yu, Ning Li, Shuaijian Dai, 2022, bioRxiv.

Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis

Chao Yang, Zengyou He, Weichuan Yu, 2009, BMC Bioinformatics.

Identifying disease-associated SNP clusters via contiguous outlier detection

Qiang Yang, Xiaowei Zhou, Can Yang, 2011, Bioinform..

Approximate orientation steerability based on angular Gaussians

Weichuan Yu, Gerald Sommer, Kostas Daniilidis, 2001, IEEE Trans. Image Process..

Local orientation analysis in images and image sequences using steerable filters

Weichuan Yu, Weichuan Yu, 2000 .

Xolik: finding cross-linked peptides with maximum paired scores in linear time

Wei Jiang, Weichuan Yu, Jiaan Dai, 2017, bioRxiv.

Understanding the limit of open search in the identification of peptides with post-translational modifications — A simulation-based study

Weichuan Yu, Jiaan Dai, Fengchao Yu, 2018, bioRxiv.

Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity

Ning Li, Weichuan Yu, Fengchao Yu, 2016, bioRxiv.

Exhaustively Identifying Cross-Linked Peptides with a Linear Computational Complexity

Ning Li, Weichuan Yu, Fengchao Yu, 2016, bioRxiv.

PIPI: PTM-Invariant Peptide Identification Using Coding Method

Weichuan Yu, Fengchao Yu, Ning Li, 2016, bioRxiv.

PIPI: PTM-Invariant Peptide Identification Using Coding Method

Weichuan Yu, Fengchao Yu, Ning Li, 2016, bioRxiv.

ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database

Ning Li, Weichuan Yu, Fengchao Yu, 2016, BMC Bioinformatics.

Stable Feature Selection for Biomarker Discovery

Zengyou He, Weichuan Yu, Zengyou He, 2010, Comput. Biol. Chem..

Protein inference: a review

Zengyou He, Weichuan Yu, Jingjing Wang, 2012, Briefings Bioinform..

Region-based interaction detection in genome-wide case-control studies

Weichuan Yu, Sen Zhang, Wei Jiang, 2019, BMC Medical Genomics.

Apical constriction is driven by a pulsatile apical myosin network in delaminating Drosophila neuroblasts

Toyotaka Ishibashi, Weichuan Yu, Yan Yan, 2017, Development.

Power estimation and sample size determination for replication studies of genome-wide association studies

Wei Jiang, Weichuan Yu, Wei Jiang, 2016, BMC Genomics.

Automatic 3D joint erosion detection for the diagnosis and monitoring of rheumatoid arthritis using hand HR-pQCT images

Jing-Hao Xue, Weichuan Yu, Xuechen Zhang, 2023, Comput. Medical Imaging Graph..

HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies

Qiang Yang, Hongyu Zhao, Can Yang, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Combinative Multi-scale Level Set Framework for Echocardiographic Image Segmentation

James S. Duncan, Weichuan Yu, Ning Lin, 2002, MICCAI.

Bayesian Mass Spectra Peak Alignment from Mass Charge Ratios

Weichuan Yu, Baolin Wu, Hongyu Zhao, 2008 .

Multiple motion analysis: in spatial or in spectral domain?

Weichuan Yu, Gerald Sommer, Kostas Daniilidis, 2003, Comput. Vis. Image Underst..

Detection and characterization of multiple motion points

Weichuan Yu, Steven S. Beauchemin, Gerald Sommer, 1999, Proceedings. 1999 IEEE Computer Society Conference on Computer Vision and Pattern Recognition (Cat. No PR00149).

FPGA Implementation of the Coupled Filtering Method and the Affine Warping Method

Weichuan Yu, Chen Zhang, Philip K. T. Mok, 2017, IEEE Transactions on NanoBioscience.

FPGA implementation of the coupled filtering method

Chen Zhang, Weichuan Yu, Philip K. T. Mok, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data

Zengyou He, Can Yang, Weichuan Yu, 2011, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification

Chao Yang, Zengyou He, Can Yang, 2008, RECOMB.

Statistical Methods In Proteomics

Hongyu Zhao, Baolin Wu, Xiaoye Li, 2006 .

Motif-All: discovering all phosphorylation motifs

Zengyou He, Ning Li, Can Yang, 2011, BMC Bioinformatics.

Predictive rule inference for epistatic interaction detection in genome-wide association studies

Qiang Yang, Can Yang, Xiang Wan, 2010, Bioinform..

SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies

Qiang Yang, Zengyou He, Can Yang, 2009, Bioinform..

Three dimensional orientation signatures with conic kernel filtering for multiple motion analysis

Weichuan Yu, Gerald Sommer, Kostas Daniilidis, 2003, Image Vis. Comput..

3D-orientation signatures with conic kernel filtering for multiple motion analysis

Weichuan Yu, Gerald Sommer, Kostas Daniilidis, 2001, Proceedings of the 2001 IEEE Computer Society Conference on Computer Vision and Pattern Recognition. CVPR 2001.

Automatic mitral leaflet tracking in echocardiography by outlier detection in the low-rank representation

Xiaowei Zhou, Can Yang, Weichuan Yu, 2012, 2012 IEEE Conference on Computer Vision and Pattern Recognition.

GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies

Can Yang, Xiang Wan, Weichuan Yu, 2011, Bioinform..

Using MicroPET Imaging in Quantitative Verification of the Acupuncture Effect in Ischemia Stroke Treatment

Huafeng Liu, Weichuan Yu, Xiaoyan Shen, 2010, Scientific Reports.

Identification of a Common Variant for Coronary Heart Disease at PDE1A Contributes to Individualized Treatment Goals and Risk Stratification of Cardiovascular Complications in Chinese Patients With Type 2 Diabetes

A. Keech, R. Ozaki, A. Kong, 2023, Diabetes care.

On Feature Motion Decorrelation in Ultrasound Speckle Tracking

Weichuan Yu, Tianzhu Liang, Ling Sing Yung, 2013, IEEE Transactions on Medical Imaging.

Active Contours with Group Similarity

James S. Duncan, Xiaowei Zhou, Weichuan Yu, 2013, 2013 IEEE Conference on Computer Vision and Pattern Recognition.

Ultrasound bio-microscopic image segmentation for evaluation of zebrafish cardiac function

Weichuan Yu, K. K. Shung, Lei Sun, 2013, IEEE Transactions on Ultrasonics, Ferroelectrics and Frequency Control.

Accurate segmentation of ultrasound images using the motion cue

Xiaowei Zhou, Weichuan Yu, Tianzhu Liang, 2010, 2010 IEEE International Symposium on Biomedical Imaging: From Nano to Macro.

What is the probability of replicating a statistically significant association in genome-wide association studies?

Wei Jiang, Weichuan Yu, Jing-Hao Xue, 2016, Briefings Bioinform..

Estimating Reproducibility in Genome-Wide Association Studies

Weichuan Yu, Jing-Hao Xue, Wei Jiang, 2015, 1508.06715.

DOA Estimation Ambiguity Resolution Method for Near Field Distributed Array

Weichuan Yu, Peiyu He, Ao Cui, 2021, 2021 6th International Conference on Intelligent Computing and Signal Processing (ICSP).

Detecting two-locus associations allowing for interactions in genome-wide association studies

Qiang Yang, Can Yang, Xiang Wan, 2010, Bioinform..

Comments on 'An empirical comparison of several recent epistatic interaction detection methods'

Can Yang, Xiang Wan, Weichuan Yu, 2012, Bioinform..

A Combinatorial Perspective of the Protein Inference Problem

Chao Yang, Zengyou He, Weichuan Yu, 2012, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Multisample aCGH Data Analysis via Total Variation and Spectral Regularization

Hongyu Zhao, Xiaowei Zhou, Can Yang, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Using skew Gabor filter in source signal separation and local spectral orientation analysis

James S. Duncan, Weichuan Yu, Gerald Sommer, 2005, Image Vis. Comput..

Using skew Gabor filter in source signal separation and local spectral multi-orientation analysis

Kostas Daniilidis, G. Sommer, Weichuan Yu, 2004, Proceedings of the 2004 IEEE Computer Society Conference on Computer Vision and Pattern Recognition, 2004. CVPR 2004..

Skewness of Gabor Wavelets and Source Signal Separation

Weichuan Yu, Gerald Sommer, Kostas Daniilidis, 2001, WAA.

MALDI-MS data analysis for disease biomarker discovery.

Weichuan Yu, Hongyu Zhao, Kenneth R Williams, 2006, Methods in molecular biology.

Detecting and aligning peaks in mass spectrometry data with applications to MALDI

Hongyu Zhao, Weichuan Yu, Baolin Wu, 2006, Comput. Biol. Chem..

A hidden two-locus disease association pattern in genome-wide association studies

Qiang Yang, Can Yang, Xiang Wan, 2011, BMC Bioinformatics.

SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies

Qiang Yang, H. Xue, Zengyou He, 2009, Bioinform..

A brief review of signal processing issues in mass spectrometry-based proteomics studies

Chao Yang, Weichuan Yu, Weichuan Yu, 2011, 2011 Conference Record of the Forty Fifth Asilomar Conference on Signals, Systems and Computers (ASILOMAR).

An Array Interpolation Based Compressive Sensing DOA Method for Sparse Array

Ao Cui, Weichuang Yu, Peiyu He, 2019, 2019 3rd International Conference on Imaging, Signal Processing and Communication (ICISPC).

Oriented Structure of the Occlusion Distortion: Is It Reliable?

Kostas Daniilidis, G. Sommer, S. Beauchemin, 2002, IEEE Trans. Pattern Anal. Mach. Intell..

Approximate orientation steerability based on angular Gaussians

Kostas Daniilidis, G. Sommer, Weichuan Yu, 2001, IEEE Trans. Image Process..

Understanding the Limit of Open Search in the Identification of Peptides With Post-translational Modifications — A Simulation-Based Study

Jiaan Dai, Fengchao Yu, Chen Zhou, 2020, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Score regularization for peptide identification

Zengyou He, Hongyu Zhao, Weichuan Yu, 2011, BMC Bioinformatics.

Improving peptide identification with single-stage mass spectrum peaks

Zengyou He, Weichuan Yu, Zengyou He, 2009, Bioinform..

Development of in Planta Chemical Cross-Linking-Based Quantitative Interactomics in Arabidopsis.

Weichuan Yu, Fengchao Yu, Shichang Liu, 2018, Journal of proteome research.