S. Sheppard
发表
M. Gutmann,
J. Corander,
M. Lipsitch,
2017,
Genetics.
D. Falush,
K. Yahara,
X. Didelot,
2015,
Molecular biology and evolution.
Jesse Shapiro,
S. Sheppard,
B. Shapiro,
2014,
Genome Medicine.
Harry A. Thorpe,
E. Feil,
S. Sheppard,
2017,
bioRxiv.
S. Sheppard,
J. Harwood,
2005
.
Keith A. Jolley,
Daniel Falush,
Stephen D. Bentley,
2013,
Proceedings of the National Academy of Sciences.
Jukka Corander,
Keith A. Jolley,
James E. Bray,
2015,
Genome biology and evolution.
Keith A. Jolley,
Alison J. Cody,
Samuel K. Sheppard,
2012,
Microbiology.
S. Sheppard,
P. Patchanee,
B. Pascoe,
2020
.
N. Loman,
M. Pallen,
S. Sheppard,
2016,
bioRxiv.
F. Mégraud,
S. Sheppard,
M. Chemaly,
2019,
Scientific Reports.
S. Sheppard,
D. Guttman,
J. Fitzgerald,
2018,
Nature Reviews Genetics.
Ben Raymond,
Richard J. Ellis,
Michael B. Bonsall,
2010,
PLoS pathogens.
M. Gutmann,
J. Corander,
W. Hanage,
2015,
bioRxiv.
S. Sheppard,
M. Chemaly,
G. Méric,
2018,
Scientific Reports.
B. Pearson,
J. Parkhill,
S. Sheppard,
2019,
bioRxiv.
S. Sheppard,
M. Maiden,
J. Cowden,
2013,
PloS one.
J. Bell,
S. Sheppard,
W. Symondson,
2005,
Molecular ecology.
S. Sheppard,
M. Konvička,
W. Symondson,
2005,
Molecular ecology.
S. Sheppard,
I. Head,
N. Gray,
2005,
Bioresource technology.
B. Raymond,
R. Bowden,
S. Sheppard,
2018,
Molecular ecology.
S. Sheppard,
M. Maiden,
D. Woodcock,
2012,
Applied and Environmental Microbiology.
Aldert L. Zomer,
B. Duim,
S. Sheppard,
2016,
Genome biology and evolution.
S. Sheppard,
G. Méric,
A. Quesada,
2017,
Front. Microbiol..
D. Falush,
D. Lawson,
C. Rizzato,
2017,
PLoS genetics.
D. Falush,
J. Corander,
L. Hurst,
2022,
bioRxiv.
B. Raymond,
S. Sheppard,
M. Vos,
2022,
Molecular ecology.
S. Sheppard,
G. Méric,
H. Fukumasu,
2018,
FEMS microbiology letters.
Jianjun Li,
S. Sheppard,
M. Rossi,
2016,
Journal of bacteriology.
E. Feil,
S. Sheppard,
D. Verner-Jeffreys,
2018,
Microbial genomics.
S. Sheppard,
B. Kasprzyk-Hordern,
Wei Wang,
2022,
International journal of environmental research and public health.
J. Corander,
M. Lipsitch,
W. Hanage,
2017,
Genetics.
M. Dawkins,
S. Sheppard,
M. Maiden,
2008,
Environmental microbiology.
E. Feil,
J. Snape,
S. Sheppard,
2022,
Water research.
E. Feil,
J. Snape,
S. Sheppard,
2021,
Frontiers in Microbiology.
Jason A. Weeks,
S. Sheppard,
B. Kasprzyk-Hordern,
2022,
Water research.
Harry A. Thorpe,
D. Falush,
Siqi Liu,
2021,
bioRxiv.
A. Allepuz,
S. Sheppard,
A. Torralbo,
2014,
Preventive veterinary medicine.
S. Sheppard,
M. Maiden,
J. Cowden,
2013,
PloS one.
L. Matthews,
S. Sheppard,
M. Maiden,
2012,
Epidemiology and Infection.
S. Sheppard,
P. Patchanee,
B. Pascoe,
2020,
bioRxiv.
S. Sheppard,
H. Wimalarathna,
2012
.
S. Sheppard,
M. Maiden,
J. Dallas,
2009,
The Journal of infectious diseases.
D. Falush,
D. Lawson,
C. Rizzato,
2016,
bioRxiv.
S. Sheppard,
D. Lloyd,
2002
.
Jianjun Li,
S. Sheppard,
M. Rossi,
2018
.
Jianjun Li,
S. Sheppard,
M. Rossi,
2016
.
S. Sheppard,
A. Álvarez‐Ordoñez,
J. F. Cobo-Díaz,
2021,
Food microbiology.
S. Sheppard,
E. Sproston,
H. Wimalarathna,
2018,
Microbial genomics.
M. Bruford,
S. Sheppard,
J. Harwood,
2006,
Bulletin of Entomological Research.
S. Sheppard,
B. Pascoe,
V. Post,
2022,
medRxiv.
S. Sheppard,
B. Pascoe,
J. Calland,
2019,
Genome biology and evolution.
R. G. Richards,
S. Sheppard,
G. Méric,
2017
.
S. Sheppard,
S. Dunn,
J. Turton,
2018,
Microbial genomics.
S. Sheppard,
B. Pascoe,
Shaimaa F. Mouftah,
2021,
bioRxiv.
S. Sheppard,
M. Maiden,
2015,
Cold Spring Harbor perspectives in biology.
S. Sheppard,
C. Bayliss,
Luke R. Green,
2018,
Microbial genomics.
S. Sheppard,
D. Lloyd,
2002,
Bioresource technology.
J. Corander,
S. Sheppard,
A. Pessia,
2018
.
S. Sheppard,
Haitham A. Elmarakeby,
A. Weisberg,
2017,
Phytopathology.
L. Bröcker,
E. Feil,
S. Sheppard,
2022,
Microbiology spectrum.
D. Lloyd,
S. Sheppard,
M. Beckmann,
2007
.
S. Sheppard,
2022,
Current opinion in microbiology.
D. Lloyd,
S. Sheppard,
M. Beckmann,
2004
.
Daniel Falush,
Daniel J. Wilson,
Daniel J Wilson,
2009,
Clinical infectious diseases : an official publication of the Infectious Diseases Society of America.
J. Parkhill,
S. Sheppard,
M. Maiden,
2020,
Proceedings of the National Academy of Sciences.
S. Sheppard,
N. Chokesajjawatee,
P. Patchanee,
2019,
International journal of food microbiology.
A GWAS on Helicobacter pylori strains points to genetic variants associated with gastric cancer risk
T. S. Wilkinson,
D. Falush,
F. Mégraud,
2018,
BMC Biology.
T. S. Wilkinson,
H. Rohde,
J. Bray,
2016,
PloS one.
K. Yahara,
S. Sheppard,
H. Lappin-Scott,
2015,
Environmental microbiology.
A. Buckling,
S. Sheppard,
M. Vos,
2020,
Environmental microbiology.
S. Sheppard,
M. Maiden,
N. McCarthy,
2011,
Environmental microbiology reports.
S. Sheppard,
M. Maiden,
A. Cody,
2010,
Advances in experimental medicine and biology.
G. Pinchbeck,
N. Williams,
S. Sheppard,
2019,
Veterinary Record Open.
A. Hall,
S. Sheppard,
M. Dagleish,
2015,
Molecular ecology.
M. Blaser,
D. Morgan,
S. Sheppard,
2020,
The ISME journal.
T. S. Wilkinson,
J. Corander,
J. Bray,
2017,
Genome biology and evolution.
D. Falush,
D. Lawson,
C. Rizzato,
2016,
bioRxiv.
Lisa C. Crossman,
B. Pearson,
P. Ashton,
2017
.
J. Corander,
J. McInerney,
T. Pupko,
2016,
PLoS genetics.
Daniel Falush,
Xavier Didelot,
Samuel K. Sheppard,
2014,
Molecular biology and evolution.
D. Lloyd,
S. Sheppard,
I. Head,
2005
.
D. Falush,
J. Corander,
J. Parkhill,
2021
.
Harry A. Thorpe,
D. Falush,
J. Corander,
2020,
bioRxiv.
F. Mégraud,
L. Engstrand,
S. Sheppard,
2017,
Scientific Reports.
Christine J. Boinett,
J. Corander,
A. Honkela,
2021,
Wellcome open research.
Jukka Corander,
Antti Honkela,
David M. Aanensen,
2018,
bioRxiv.
S. Sheppard,
Xiaorui Chen,
G. Méric,
2015,
Genome biology and evolution.
Campylobacter jejuni genotypes are associated with post-infection irritable bowel syndrome in humans
Robin Patel,
S. Sheppard,
D. Boxrud,
2021,
Communications Biology.
R. G. Richards,
S. Sheppard,
G. Méric,
2017,
Journal of Clinical Microbiology.
S. Sheppard,
L. Harris,
M. Morgenstern,
2017,
Journal of medical microbiology.
S. Sheppard,
João André Carriço,
G. Méric,
2019,
Front. Microbiol..
S. Sheppard,
Carolin M. Kobras,
A. Fenton,
2021,
Genome biology.
Samuel K Sheppard,
S. Sheppard,
M. Maiden,
2010,
International journal of food microbiology.
S. Sheppard,
D. Guttman,
J. Fitzgerald,
2018,
Nature Reviews Genetics.
Keith A. Jolley,
Samuel K. Sheppard,
S. Sheppard,
2012,
Genes.
D. Aanensen,
E. Feil,
S. Sheppard,
2017,
Front. Microbiol..
K. Yahara,
S. Sheppard,
M. Maiden,
2021,
bioRxiv.
K. Yahara,
S. Sheppard,
K. Jolley,
2022
.
P. Krusche,
S. Sheppard,
D. Woodcock,
2017,
Scientific Reports.
Eduardo N. Taboada,
K. Yahara,
X. Didelot,
2017,
Molecular ecology.
Fabrice Touzain,
Samuel K. Sheppard,
Guillaume Méric,
2017,
Applied and Environmental Microbiology.
Keith A. Jolley,
James E. Bray,
Stephen D. Bentley,
2017,
Environmental microbiology.
K. Yahara,
C. Morris,
S. Sheppard,
2016,
Microbial genomics.
Daniel J. Wilson,
Bethany L. Dearlove,
S. Sheppard,
2015,
The ISME Journal.
J. Corander,
J. Blom,
K. Paszkiewicz,
2015,
Applied and Environmental Microbiology.
Jukka Corander,
Pekka Marttinen,
Julian Parkhill,
2014,
Molecular ecology.
S. Sheppard,
N. McCarthy,
M. Maiden,
2013,
BMC Microbiology.
D. Falush,
J. Affourtit,
M. Egholm,
2012,
Molecular ecology.
S. Sheppard,
M. Maiden,
N. McCarthy,
2011,
Molecular ecology.
Daniel J. Wilson,
S. Sheppard,
D. Wilson,
2010,
PloS one.
Alison J. Cody,
Samuel K. Sheppard,
Richard Meldrum,
2010,
Applied and Environmental Microbiology.
D. Falush,
S. Sheppard,
M. Maiden,
2008,
Science.
Samuel K. Sheppard,
Edward J. Feil,
Sion C. Bayliss,
2019,
bioRxiv.
T. Meyer,
S. Sheppard,
H. Brüggemann,
2012,
PloS one.
Keith A. Jolley,
Samuel K. Sheppard,
Koji Yahara,
2014,
PloS one.
Andy Smith,
Simon Thompson,
Mark J. Pallen,
2016,
bioRxiv.
Larry Bliss,
Ben Pascoe,
Samuel K. Sheppard,
2019,
bioRxiv.
P. Krusche,
S. Sheppard,
D. Woodcock,
2016,
bioRxiv.
T. S. Wilkinson,
B. Pearson,
J. Parkhill,
2019,
bioRxiv.
S. Sheppard,
M. Maiden,
J. Dallas,
2009,
Foodborne pathogens and disease.
S. Sheppard,
R. Ellis,
L. Petrovska,
2017,
Front. Cell. Infect. Microbiol..
Jianjun Li,
S. Sheppard,
M. Rossi,
2016,
bioRxiv.
S. Sheppard,
G. Méric,
P. Patchanee,
2022,
Microbial genomics.
S. Sheppard,
G. Méric,
P. Patchanee,
2021,
bioRxiv.
S. Sheppard,
N. Chokesajjawatee,
P. Patchanee,
2021,
International journal of food microbiology.
S. Sheppard,
K. Jolley,
C. Parker,
2020,
medRxiv.
Jukka Corander,
Antti Honkela,
Aravind Sankar,
2015,
Microbial genomics.
T. S. Wilkinson,
J. Corander,
K. Yahara,
2021,
Nature Communications.
Alison J. Cody,
Samuel K. Sheppard,
Ken J. Forbes,
2011,
Applied and Environmental Microbiology.
S. Sheppard,
M. Maiden,
N. McCarthy,
2010,
Journal of applied microbiology.
S. Sheppard,
J. Dallas,
A. Cody,
2010,
Journal of applied microbiology.
Daniel Falush,
Samuel K. Sheppard,
D. Falush,
2010
.
Ken J Forbes,
Samuel K Sheppard,
S. Sheppard,
2009,
International journal of food microbiology.
S. Sheppard,
M. Maiden,
J. Dallas,
2009,
Applied and Environmental Microbiology.
S. Sheppard,
K. Jolley,
N. McCarthy,
2011,
Microbiology.
L. Hurst,
S. Sheppard,
A. Lubben,
2018,
Genome Biology.
T. S. Wilkinson,
H. Rohde,
J. Bray,
2016,
PloS one.
S. Sheppard,
P. Ellström,
J. Järhult,
2018,
Front. Microbiol..
S. Sheppard,
P. Patchanee,
B. Pascoe,
2018,
Microbiology and Biotechnology Letters.
S. Sheppard,
S. Yoon,
Kang-mu Lee,
2021,
PLoS pathogens.
S. Sheppard,
G. Méric,
S. Bayliss,
2019,
Environmental microbiology.
H. Rohde,
J. Corander,
J. Bray,
2018,
Nature Communications.
J. Parkhill,
D. Maskell,
N. Thomson,
2016,
Scientific Reports.
S. Sheppard,
D. Lloyd,
2002,
Journal of microbiological methods.
J. V. van Dijl,
Xiaochen Bo,
S. Sheppard,
2016,
International journal of medical microbiology : IJMM.
K. Rajakumar,
S. Sheppard,
J. Morrissey,
2015,
Infection and Immunity.
S. Sheppard,
I. Porcelli,
G. Méric,
2015,
PloS one.
S. Sheppard,
I. Head,
N. Gray,
2003,
FEMS microbiology ecology.
S. Sheppard,
G. Méric,
H. Nielsen,
2018,
Scientific Reports.
Daniel J. Wilson,
D. Clifton,
S. Sheppard,
2021,
bioRxiv.
S. Sheppard,
M. Maiden,
N. McCarthy,
2010,
Journal of applied microbiology.
J. Corander,
S. Sheppard,
M. Vos,
2019,
Evolutionary applications.
D. Falush,
J. Corander,
L. Hurst,
2023,
bioRxiv.
S. Sheppard,
A. Hay,
B. Pascoe,
2021,
medRxiv.
F. Mégraud,
S. Sheppard,
P. Lehours,
2020,
Applied and Environmental Microbiology.
S. Sheppard,
M. Chemaly,
G. Méric,
2018,
Scientific Reports.
T. Dallman,
S. Sheppard,
C. Jenkins,
2019,
Front. Genet..
S. Sheppard,
R. Ellis,
L. Petrovska,
2017,
Front. Cell. Infect. Microbiol..
K. Yahara,
S. Sheppard,
N. McCarthy,
2023,
bioRxiv.
Identification and initial characterisation of a protein involved in Campylobacter jejuni cell shape
J. Parkhill,
D. Maskell,
N. Thomson,
2017,
Microbial pathogenesis.
S. Sheppard,
K. Morikawa,
B. Pascoe,
2020,
Journal of global antimicrobial resistance.
Alexander W. Gofton,
S. Casjens,
S. Sheppard,
2023,
BMC Genomics.
Hannah E Marsh,
T. Székely,
S. Sheppard,
2023,
bioRxiv.
J. Corander,
S. Sheppard,
A. Pessia,
2018,
Genome biology and evolution.
L. Hurst,
S. Sheppard,
A. Lubben,
2017,
bioRxiv.
Christophe Sarran,
Samuel K Sheppard,
S. Sheppard,
2012,
BMJ Open.
T. Dallman,
A. Seely,
N. Williams,
2016,
PloS one.
S. Sheppard,
N. Longrich,
2020
.
S. Sheppard,
S. Dunn,
J. Turton,
2018
.
D. Falush,
D. Lawson,
C. Rizzato,
2017,
PLoS genetics.
Harry A. Thorpe,
D. Balding,
J. Corander,
2023,
bioRxiv.
D. Falush,
D. Lawson,
C. Rizzato,
2016,
bioRxiv.
S. Sheppard,
A. Preston,
P. Muir,
2023,
Heliyon.
S. Sheppard,
G. Méric,
H. Nielsen,
2018,
Scientific Reports.
J. Corander,
A. Honkela,
D. Aanensen,
2018
.
S. Sheppard,
A. Álvarez‐Ordoñez,
J. F. Cobo-Díaz,
2020
.
N. Loman,
S. Sheppard,
Emily J. Richardson,
2023
.
Eduardo N. Taboada,
K. Yahara,
X. Didelot,
2016
.
S. Sheppard,
S. Forsythe,
B. Pascoe,
2016,
Genome Announcements.
S. Sheppard,
N. Chokesajjawatee,
P. Patchanee,
2020,
bioRxiv.
S. Sheppard,
M. Dagleish,
G. Méric,
2015,
Molecular ecology.
Navigating the AI frontier: ethical considerations and best practices in microbial genomics research
Andrew J. Page,
S. Sheppard,
N. Tumelty,
2023,
Microbial genomics.
S. Sheppard,
M. Maiden,
F. Colles,
2010,
Journal of applied microbiology.
S. Sheppard,
B. Pascoe,
Evangelos Mourkas,
2023,
Microbial genomics.
S. Sheppard,
M. Maiden,
J. Cowden,
2013,
PloS one.
S. Sheppard,
C. Parker,
G. Méric,
2020
.