J. Vilar

发表

From molecular noise to behavioural variability in a single bacterium

J. Vilar, P. Cluzel, T. Emonet, 2004, Nature.

Reliable prediction of complex phenotypes from a modular design in free energy space: an extensive exploration of the lac operon.

Leonor Saiz, Jose M G Vilar, J. Vilar, 2013, ACS synthetic biology.

Control of gene expression by modulated self-assembly

J. Vilar, J. Vilar, L. Saiz, 2011, Nucleic acids research.

Ab initio thermodynamic modeling of distal multisite transcription regulation

J. Vilar, L. Saiz, 2007, Nucleic acids research.

Protein-protein/DNA interaction networks: versatile macromolecular structures for the control of gene expression.

J. Vilar, L. Saiz, L Saiz, 2008, IET systems biology.

Efficiency and versatility of distal multisite transcription regulation

J. Vilar, L. Saiz, 2007, 0704.3264.

DNA looping: the consequences and its control.

Leonor Saiz, Jose M G Vilar, J. Vilar, 2006, Current opinion in structural biology.

Systems biophysics of gene expression.

J. Vilar, J. Vilar, L. Saiz, 2013, Biophysical journal.

DNA looping and physical constraints on transcription regulation.

S. Leibler, J. Vilar, J. Vilar, 2003, Journal of molecular biology.

Modeling network dynamics

Stanislas Leibler, S. Leibler, J. Vilar, 2003, The Journal of cell biology.

Trafficking coordinate description of intracellular transport control of signaling networks.

J. Vilar, L. Saiz, 2011, Biophysical journal.

Regulation of Human Hsc70 ATPase and Chaperone Activities by Apg2: Role of the Acidic Subdomain.

M. Lucas, J. Vilar, A. Muga, 2019, Journal of molecular biology.

Extraction and refolding determinants of chaperone-driven aggregated protein reactivation.

J. Vilar, J. Vilar, A. Muga, 2020, Journal of molecular biology.

Robustness of DNA looping across multiple cell divisions in individual bacteria

J. Vilar, P. Cluzel, J. Vilar, 2022, Proceedings of the National Academy of Sciences of the United States of America.

Multi-landmark alignment of genomic signals reveals conserved expression patterns across transcription start sites

J. Vilar, J. Vilar, L. Saiz, 2021, bioRxiv.

Reliably quantifying the evolving worldwide dynamic state of the COVID-19 outbreak from death records, clinical parametrization, and demographic data

J. Vilar, L. Saiz, 2021, Scientific Reports.

The evolving worldwide dynamic state of the COVID-19 outbreak

J. Vilar, L. Saiz, 2020, medRxiv.

Ascertaining the initiation of epidemic resurgences: an application to the COVID-19 second surges in Europe and the Northeast United States

J. Vilar, L. Saiz, 2021, Royal Society Open Science.

J. Vilar, L. Saiz, 2021, medRxiv.

DNA looping in gene regulation: from the assembly of macromolecular complexes to the control of transcriptional noise.

Leonor Saiz, Jose M G Vilar, J. Vilar, 2005, Current opinion in genetics & development.

Signal Processing in the TGF-β Superfamily Ligand-Receptor Network

Chris Sander, Ronald Jansen, Jose M. G. Vilar, 2005, PLoS Comput. Biol..

Stochastic dynamics of macromolecular-assembly networks

Leonor Saiz, Jose MG Vilar, J. Vilar, 2006, Molecular systems biology.

Accurate prediction of gene expression by integration of DNA sequence statistics with detailed modeling of transcription regulation

Jose M. G. Vilar, J. Vilar, 2010, Biophysical journal.

Synthetic cooperation in engineered yeast populations

Wenying Shou, Sri Ram, Jose M. G. Vilar, 2007, Proceedings of the National Academy of Sciences.

Robustness of DNA Looping Across Multiple Divisions in Individual Bacteria

J. Vilar, P. Cluzel, J. Vilar, 2021, bioRxiv.

Modeling network dynamics: the lac operon, a case study

Jose M. G. Vilar, Călin C. Guet, Stanislas Leibler, 2004 .

Suppression and enhancement of transcriptional noise by DNA looping.

Leonor Saiz, Jose M G Vilar, J. Vilar, 2014, Physical review. E, Statistical, nonlinear, and soft matter physics.

In vivo evidence of alternative loop geometries in DNA-protein complexes

J. Vilar, L. Saiz, 2006, q-bio/0602012.

Multilevel Deconstruction of the In Vivo Behavior of Looped DNA-Protein Complexes

J. Vilar, J. Vilar, L. Saiz, 2007, PloS one.

Multiprotein DNA looping.

Leonor Saiz, Jose M G Vilar, J. Vilar, 2006, Physical review letters.

All-or-none amyloid disassembly via chaperone-triggered fibril unzipping favors clearance of α-synuclein toxic species

J. Vilar, J. Vilar, A. Muga, 2021, Proceedings of the National Academy of Sciences.

Clearly Detectable, Kinetically Restricted Solid-Solid Phase Transition in cis-Ceramide Monolayers.

F. Goñi, J. Vilar, L. Saiz, 2018, Langmuir : the ACS journal of surfaces and colloids.

Noisy-threshold control of cell death

Jose M. G. Vilar, J. Vilar, J. Vilar, 2010, BMC Systems Biology.

CplexA: a Mathematica package to study macromolecular-assembly control of gene expression

Leonor Saiz, Jose M. G. Vilar, J. Vilar, 2010, Bioinform..

Entropy of Leukemia on Multidimensional Morphological and Molecular Landscapes

Jose M. G. Vilar, J. Vilar, 2014, 1405.7856.

Computing at the Front-End by Receptor Networks.

Leonor Saiz, Jose M G Vilar, J. Vilar, 2017, Cell systems.

The unreasonable effectiveness of equilibrium gene regulation through the cell cycle

J. Vilar, L. Saiz, 2023, bioRxiv.