S. Efroni

发表

Reactive animation: realistic modeling of complex dynamic systems

David Harel, Sol Efroni, Irun R. Cohen, 2005, Computer.

Toward rigorous comprehension of biological complexity: modeling, execution, and visualization of thymic T-cell maturation.

D. Harel, I. Cohen, S. Efroni, 2003, Genome research.

Identification of Key Processes Underlying Cancer Phenotypes Using Biologic Pathway Analysis

Kenneth H. Buetow, Carl F. Schaefer, Sol Efroni, 2007, PloS one.

Classification of lung adenocarcinoma and squamous cell carcinoma samples based on their gene expression profile in the sbv IMPROVER Diagnostic Signature Challenge

Marja Talikka, Stéphanie Boué, Sol Efroni, 2013 .

Detecting Cancer Gene Networks Characterized by Recurrent Genomic Alterations in a Population

Sharon I. Greenblum, C. Schaefer, K. Buetow, 2011, PloS one.

Network as biomarker

S. Efroni, Rotem Ben-Hamo, Sol Efroni, 2013 .

Gene expression profile of empirically delineated classes of unexplained chronic fatigue.

L. Carmel, U. Vollmer-Conna, S. Efroni, 2006, Pharmacogenomics.

Shift in GATA3 functions, and GATA3 mutations, control progression and clinical presentation in breast cancer

S. Efroni, Rotem Ben-Hamo, Helit Cohen, 2014, Breast Cancer Research.

Rep‐Seq: uncovering the immunological repertoire through next‐generation sequencing

Y. Louzoun, S. Efroni, Jennifer I. C. Benichou, 2012, Immunology.

T cell repertoire sequencing as a cancer's liquid biopsy—can we decode what the immune system is coding?

S. Efroni, T. Snir, Sol Efroni, 2020 .

Systems analysis utilising pathway interactions identifies sonic hedgehog pathway as a primary biomarker and oncogenic target in hepatocellular carcinoma.

Sharon I. Greenblum, C. Schaefer, K. Buetow, 2013, IET systems biology.

CDR3 and V genes show distinct reconstitution patterns in T cell repertoire post-allogeneic bone marrow transplantation

N. Tickotsky-Moskovitz, S. Dvorkin, Y. Louzoun, 2020, Immunogenetics.

Predicting and affecting response to cancer therapy based on pathway-level biomarkers

G. Getz, C. Benes, S. Efroni, 2020, Nature Communications.

Quantification of read species behavior within whole genome sequencing of cancer genomes for the stratification and visualization of genomic variation

K. Buetow, G. Yaari, S. Efroni, 2016, Nucleic acids research.

Cohen Modeling , Execution , and Visualization of Thymic T-Cell Maturation Toward Rigorous Comprehension of Biological Complexity : Material Supplemental

D. Harel, I. Cohen, S. Efroni, 2003 .

Yang‐Yu Liu, P. Castaldi, S. Efroni, 2020, Nature Metabolism.

Distribution equality as an optimal epidemic mitigation strategy

B. Barzel, R. Cohen, I. Bachelet, 2020, Scientific Reports.

Mice developing mammary tumors evolve T cell sequences shared with human breast cancer patients

C. Clouser, I. Cohen, G. Yaari, 2018, bioRxiv.

IL-27 acts on DCs to suppress the T cell response and autoimmunity by inducing expression of the immunoregulatory molecule CD39

V. Kuchroo, F. Quintana, S. Efroni, 2013, Nature Immunology.

Dendritic Cells in the Context of Human Tumors: Biology and Experimental Tools

Z. Ram, S. Efroni, A. Tárnok, 2016, International reviews of immunology.

Reciprocal Regulation between SIRT6 and miR-122 Controls Liver Metabolism and Predicts Hepatocarcinoma Prognosis.

S. Efroni, Y. Kanfi, H. Cohen, 2016, Cell reports.

Autotaxin–Lysophosphatidic Acid Axis Acts Downstream of Apoprotein B Lipoproteins in Endothelial Cells

A. Brandis, S. Efroni, Rotem Ben-Hamo, 2016, Arteriosclerosis, thrombosis, and vascular biology.

Resistance to paclitaxel is associated with a variant of the gene BCL2 in multiple tumor types

D. Barash, I. Barshack, S. Aviel-Ronen, 2019, npj Precision Oncology.

MicroRNA regulation of molecular pathways as a generic mechanism and as a core disease phenotype

S. Efroni, Rotem Ben-Hamo, Sol Efroni, 2015, Oncotarget.

Astrocyte‐specific transcriptome analysis using the ALDH1L1 bacTRAP mouse reveals novel biomarkers of astrogliosis in response to neurotoxicity

J. O'Callaghan, S. Efroni, D. Miller, 2019, Journal of neurochemistry.

heartsand hyperthermic heat-acclimated rat in desensitization underlie cardiomyocyte performance handling and myofilament

S. Efroni, Rotem Ben-Hamo, G. Gerstenblith, 2015 .

Immunological analysis of phase II glioblastoma dendritic cell vaccine (Audencel) trial: immune system characteristics influence outcome and Audencel up-regulates Th1-related immunovariables

C. Marosi, G. Ricken, J. Hainfellner, 2018, Acta Neuropathologica Communications.

Design principles of biologically fabricated avian nests

Hadass R. Jessel, I. Bachelet, S. Efroni, 2019, Scientific Reports.

Distinct inhibitory effects on mTOR signaling by ethanol and INK128 in diffuse large B-cell lymphoma

K. Mazan-Mamczarz, K. Becker, S. Efroni, 2015, Cell Communication and Signaling.

hsa-miR-9 and drug control over the P38 network as driving disease outcome in GBM patients

S. Efroni, Rotem Ben-Hamo, Sol Efroni, 2013 .

Heat acclimation memory: do the kinetics of the deacclimated transcriptome predispose to rapid reacclimation and cytoprotection?

S. Efroni, Rotem Ben-Hamo, M. Horowitz, 2014, Journal of applied physiology.

Digitizable therapeutics for decentralized mitigation of global pandemics

Reuven Cohen, Ido Bachelet, Adar Hacohen, 2019, Scientific Reports.

Digital therapeutics for distributed response to global pandemics

Reuven Cohen, Ido Bachelet, Adar Hacohen, 2018, bioRxiv.

Fmrp Interacts with Adar and Regulates RNA Editing, Synaptic Density and Locomotor Activity in Zebrafish

L. Appelbaum, E. Levanon, S. Efroni, 2015, PLoS genetics.

Predicting and affecting response to cancer therapy based on pathway-level biomarkers

G. Getz, C. Benes, S. Efroni, 2020, Nature Communications.

Network Representation of T-Cell Repertoire— A Novel Tool to Analyze Immune Response to Cancer Formation

Sol Efroni, Avner Priel, Miri Gordin, 2018, Front. Immunol..

Distinct inhibitory effects on mTOR signaling by ethanol and INK128 in diffuse large B-cell lymphoma

K. Mazan-Mamczarz, K. Becker, S. Efroni, 2015, Cell Communication and Signaling.

A T cell repertoire timestamp is at the core of responsiveness to CTLA-4 blockade

S. Efroni, A. Zilberberg, M. Shugay, 2021, iScience.

Genetic variations at loci involved in the immune response are risk factors for hepatocellular carcinoma

Sharon I. Greenblum, Jinghui Zhang, K. Buetow, 2010, Hepatology.

Simplicity belies a complex system: a response to the minimal model of immunity of Langman and Cohn.

Sol Efroni, Irun R Cohen, I. Cohen, 2002, Cellular immunology.

Comparing Transcriptome Profiles of Neurons Interfacing Adjacent Cells and Nanopatterned Substrates Reveals Fundamental Neuronal Interactions.

S. Efroni, O. Shefi, A. Sharoni, 2019, Nano letters.

Emergent Dynamics of Thymocyte Development and Lineage Determination

David Harel, Sol Efroni, Irun R. Cohen, 2006, PLoS Comput. Biol..

A novel mitosis-associated lncRNA, MA-linc1, is required for cell cycle progression and sensitizes cancer cells to Paclitaxel

S. Efroni, D. Ginsberg, Moriah Gidoni, 2015, Oncotarget.

Global transcription in pluripotent embryonic stem cells.

Daniel J. Hoeppner, T. Misteli, K. Buetow, 2008, Cell stem cell.

Resource System-wide Analysis of t he T Cell Response Graphical Abstract Highlights

D. Douek, L. Carmel, F. Quintana, 2016 .

System-wide Analysis of the T Cell Response.

Liran Carmel, Yoram Louzoun, Daniel C. Douek, 2016, Cell reports.

A single nucleotide variant of human PARP1 determines response to PARP inhibitors

S. Efroni, A. Varvak, A. Priel, 2020, npj Precision Oncology.

Reactive animation: From piecemeal experimentation to reactive biological systems

David Harel, Sol Efroni, Oded Vainas, 2011, Autoimmunity.

The heuristics of biologic theory: the case of self-nonself discrimination.

Sol Efroni, Irun R Cohen, I. Cohen, 2003, Cellular immunology.

hsa-miR-9 controls the mobility behavior of glioblastoma cells via regulation of MAPK14 signaling elements

S. Efroni, Rotem Ben-Hamo, Helit Cohen, 2015, Oncotarget.

GENTLE: a novel bioinformatics tool for generating features and building classifiers from T cell repertoire cancer data

S. Efroni, A. Zilberberg, César Rennó-Costa, 2023, BMC Bioinformatics.

Immune-Induced Evolutionary Selection Focused on a Single Reading Frame in Overlapping Hepatitis B Virus Proteins

Y. Louzoun, S. Efroni, Jennifer I. C. Benichou, 2011, Journal of Virology.

Synaptojanin 2 is a druggable mediator of metastasis and the gene is overexpressed and amplified in breast cancer

S. Wiemann, C. Caldas, R. Russell, 2015, Science Signaling.

RBM38 Is a Direct Transcriptional Target of E2F1 that Limits E2F1-Induced Proliferation

S. Efroni, D. Ginsberg, Rotem Ben-Hamo, 2012, Molecular Cancer Research.

Cell Cycle , Cell Death , and Senescence RBM 38 Is a Direct Transcriptional Target of E 2 F 1 that Limits E 2 F 1-Induced Proliferation

S. Efroni, D. Ginsberg, Rotem Ben-Hamo, 2012 .

The linker histone H1.0 generates epigenetic and functional intratumor heterogeneity

T. Misteli, B. Spencer‐Dene, P. Chakravarty, 2016, Science.

Self-supervised learning of T cell receptor sequences exposes core properties for T cell membership.

S. Efroni, A. Zilberberg, Romi Goldner Kabeli, 2024, Science advances.

A Language Model identifies population-level features of the T cell Receptor via self-supervised learning

S. Efroni, Sol Efroni, Romi Goldner Kabeli, 2022, 2022 Fourth International Conference on Transdisciplinary AI (TransAI).

The Immune System Computes the State of the Body: Crowd Wisdom, Machine Learning, and Immune Cell Reference Repertoires Help Manage Inflammation

Sol Efroni, Irun R. Cohen, I. Cohen, 2019, Front. Immunol..

The immune system and other cognitive systems

Uri Hershberg, Sol Efroni, Uri Hershberg, 2001, Complex..

Concurrency in Biological Modeling: Behavior, Execution and Visualization

David Harel, Sol Efroni, Irun R. Cohen, 2007, FBTC@CONCUR.

Genetics as Explanation: Limits to the Human Genome Project

Henri Atlan, Sol Efroni, Irun R. Cohen, 2009 .

Stem cells do play with dice: A statistical physics view of transcription

Sol Efroni, Eran Meshorer, S. Efroni, 2009, Cell cycle.

Gene expression and network-based analysis reveals a novel role for hsa-miR-9 and drug control over the p38 network in glioblastoma multiforme progression

Sol Efroni, Rotem Ben-Hamo, S. Efroni, 2011, Genome Medicine.

Tamoxifen-resistant breast cancer cells are resistant to DNA-damaging chemotherapy because of upregulated BARD1 and BRCA1

H. Yao, F. Su, E. Song, 2018, Nature Communications.

Spatial regulation dominates gene function in the ganglia chain

Orit Shefi, Sol Efroni, Dror Hibsh, 2014, Bioinform..