C. Tuggle

Heather K. Allen, C. Tuggle, S. Bearson, 2013, Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases.

Use of bioinformatic SNP predictions in differentially expressed genes to find SNPs associated with Salmonella colonization in swine.

J. Dekkers, D. Nettleton, C. Tuggle, 2011, Journal of animal breeding and genetics = Zeitschrift fur Tierzuchtung und Zuchtungsbiologie.

Organic barn dust extract exposure impairs porcine macrophage function in vitro: implications for respiratory health.

C. Tuggle, M. Wannemuehler, A. Ramer-Tait, 2014, Veterinary immunology and immunopathology.

Activation of the Transcription Factor Nuclear Factor-Kappa B in Uterine Luminal Epithelial Cells by Interleukin 1 Beta 2: A Novel Interleukin 1 Expressed by the Elongating Pig Conceptus1

C. Tuggle, M. Lucy, R. Geisert, 2015, Biology of reproduction.

SHORT TITLE: NOVEL PIG CONCEPTUS IL1B ACTIVATES UTERINE NFKB

C. Tuggle, M. Lucy, D. Mathew, 2015 .

New insights into porcine-human synteny conservation

C. Tuggle, M. Rothschild, M. Yerle, 1999, Mammalian Genome.

Genetic architecture of gene expression underlying variation in host response to porcine reproductive and respiratory syndrome virus infection

J. Dekkers, J. Lunney, A. Kommadath, 2017, Scientific Reports.

Pig genome functional annotation enhances biological interpretations of complex traits and comparative epigenomics

M. Lund, C. Ernst, M. Fredholm, 2021 .

Human chromosome 3 and pig chromosome 13 show complete synteny conservation but extensive gene-order differences

C. Ernst, C. Tuggle, M. Rothschild, 1999, Cytogenetic and Genome Research.

Gene expression profiling in Salmonella Choleraesuis-infected porcine lung using a long oligonucleotide microarray

J. Lunney, D. Nettleton, C. Tuggle, 2006, Mammalian Genome.

This information is current as Response to Bacterial Lipopolysaccharide Resemble Human Macrophages in Their Pig Bone Marrow-Derived Macrophages

D. Hume, A. Archibald, C. Tuggle, 2012 .

From FAANG to fork: application of highly annotated genomes to improve farmed animal production

M. Groenen, P. W. Harrison, A. Archibald, 2020, Genome biology.

From FAANG to fork: application of highly annotated genomes to improve farmed animal production

Peter W. Harrison, M. Groenen, P. W. Harrison, 2020, Genome Biology.

Characterizing differential individual response to porcine reproductive and respiratory syndrome virus infection through statistical and functional analysis of gene expression

J. Steibel, J. Lunney, C. Ernst, 2013, Front. Gene..

Cloning and mapping of porcine OTF1 extends a synteny group conserved on SSC 4 and HSA 1

C. Tuggle, M. Rothschild, C. Schmitz, 1995, Mammalian Genome.

Precise mapping of breakpoints in conserved synteny between human chromosome 1 and pig chromosomes 4, 6 and 9.

C. Tuggle, P. Chardon, M. Yerle, 2002, Animal genetics.

Cloning of the complete gene for pig PIT-1 and analysis of PIT-1 protein function

C. Tuggle, M. Rothschild, T. Yu, 1998 .

Genetic and Physical Mapping of the pig Vascular Cell Adhesion Molecule 1 (VCAM1) gene to pig chromosome 4

C. Tuggle, M. Rothschild, M. Yerle, 1997 .

Effect of the estrogen receptor locus on reproduction and production traits in four commercial pig lines.

C. Tuggle, M. Rothschild, G. Plastow, 1997, Journal of animal science.

Intestinal single-cell atlas reveals novel lymphocytes in pigs with similarities to human cells

C. Tuggle, Sathesh K. Sivasankaran, J. Trachsel, 2022, Life Science Alliance.

Assignment of the scavenger receptor class B, member 2 gene (SCARB2) to porcine chromosome 8q11→q12 by somatic cell and radiation hybrid panel mapping

C. Tuggle, S. Bearson, J. Uthe, 2006, Cytogenetic and Genome Research.

Expression of Collagen Genes in the Cones of Skin in the Duroc/Yorkshire Porcine Model of Fibroproliferative Scarring

C. Tuggle, G. Carrougher, O. Couture, 2008, Journal of burn care & research : official publication of the American Burn Association.

CLONING OF THE FULL LENGTH PIG PIT1 (POU1F1) CDNA AND A NOVEL ALTERNATIVE PIT1 TRANSCRIPT, AND FUNCTIONAL STUDIES OF THEIR ENCODED PROTEINS

C. Tuggle, M. Rothschild, T. Yu, 2001, Animal biotechnology.

Control of growth hormone synthesis.

C. Tuggle, A. Trenkle, 1996, Domestic animal endocrinology.

Expression pattern, genomic cloning and RFLP analyses of the swine PIT-1 gene.

C. Tuggle, M. Rothschild, T. Yu, 2009, Animal genetics.

Development of a Real-Time Polymerase Chain Reaction Detection Method for the Quantitation of Myeloperoxidase Transcripts in Porcine Tissues

C. Tuggle, L. Marklund, T. J. Stabel, 2001 .

Regulation of the operon encoding ribonucleotide reductase in Escherichia coli: evidence for both positive and negative control.

C. Tuggle, J. Fuchs, 1986, The EMBO journal.

Analysis of Porcine Transcriptional Response to Salmonella enterica serovar Choleraesuis suggests novel targets of NFkappaB are activated in the Mesenteric Lymph Node

J. Dekkers, J. Lunney, D. Nettleton, 2008, BMC Genomics.

Global transcriptional response of porcine mesenteric lymph nodes to Salmonella enterica serovar Typhimurium.

J. Dekkers, J. Lunney, D. Nettleton, 2007, Genomics.

Differential induction of innate memory in porcine monocytes by β-glucan or bacillus Calmette-Guerin

C. Tuggle, C. Loving, Kristen A. Byrne, 2020, Innate immunity.

Computational integration of structural and functional genomics data across species to develop information on the porcine inflammatory gene regulatory pathway.

J. Dekkers, J. Lunney, D. Nettleton, 2008, Developments in biologicals.

Cloning and restriction fragment length polymorphism analysis of a cDNA for swine PIT-1, a gene controlling growth hormone expression.

C. Tuggle, M. Rothschild, T. Yu, 2009, Animal genetics.

A compendium of genetic regulatory effects across pig tissues

Xiangdong Ding, M. Lund, K. Rawlik, 2022, bioRxiv.

Neonatal Meishan pigs show POU1F1 genotype effects on plasma GH and PRL concentration.

C. Tuggle, L. Anderson, T. Yu, 2002, Animal reproduction science.

Multiple Promoters and Alternative Splicing: Hoxa5 Transcriptional Complexity in the Mouse Embryo

C. Tuggle, O. Boucherat, L. Jeannotte, 2010, PloS one.

Physical assignments of human chromosome 13 genes on pig chromosome 11 demonstrate extensive synteny and gene order conservation between pig and human.

T. F. Laughlin, C. Tuggle, C. Rogel-Gaillard, 1999, Animal genetics.

Assignment of porcine serotonin receptor subtype 2 alpha and endothelin-B receptor to chromosome 11 by linkage analysis.

C. Tuggle, M. Rothschild, L. Wang, 1999, Journal of animal science.

Tuberculosis-resistant transgenic cattle

C. Tuggle, W. Waters, 2015, Proceedings of the National Academy of Sciences.

Rapid communication: mapping the pig VCAM1 locus to chromosome 4 using a double-stranded conformation polymorphism marker (VCAM1-2).

C. Tuggle, M. Rothschild, T. Yu, 1997, Journal of animal science.

The effects of a globin blocker on the resolution of 3’mRNA sequencing data in porcine blood

J. Dekkers, J. Lunney, P. Moll, 2019, BMC Genomics.

Post-weaning blood transcriptomic differences between Yorkshire pigs divergently selected for residual feed intake

J. Dekkers, D. Nettleton, C. Tuggle, 2016, BMC Genomics.

Tissue expression patterns of chicken octamer-binding proteins.

C. Tuggle, S. Lamont, L. Heltemes, 1999, Poultry science.

Swine models for translational oncological research: an evolving landscape and regulatory considerations

C. Tuggle, K. Schachtschneider, L. Schook, 2021, Mammalian Genome.

Glutathione reductase is not required for maintenance of reduced glutathione in Escherichia coli K-12

C. Tuggle, J. Fuchs, 1985, Journal of bacteriology.

Correction: Functional Genomics Unique to Week 20 Post Wounding in the Deep Cone/Fat Dome of the Duroc/Yorkshire Porcine Model of Fibroproliferative Scarring

R. Beyer, K. Kerr, C. Tuggle, 2015, PloS one.

Functional Genomics Unique to Week 20 Post Wounding in the Deep Cone/Fat Dome of the Duroc/Yorkshire Porcine Model of Fibroproliferative Scarring

Kathleen F. Kerr, R. Beyer, K. Kerr, 2011, PloS one.

Salmonella enterica serovar Typhimurium-infected pigs with different shedding levels exhibit distinct clinical, peripheral cytokine and transcriptomic immune response phenotypes

J. Lunney, D. Nettleton, C. Tuggle, 2015, Innate immunity.

Survival of human cadaver skin on severe combined immune deficiency pigs: Proof of concept

A. Singer, C. Tuggle, E. Tredget, 2019, Wound repair and regeneration : official publication of the Wound Healing Society [and] the European Tissue Repair Society.

Physical mapping of genes in the porcine ovarian transcriptome.

D. Pomp, C. Tuggle, A. R. Caetano, 2005, Animal genetics.

Development of Severe Combined Immunodeficient (SCID) Pig Models for Translational Cancer Modeling: Future Insights on How Humanized SCID Pigs Can Improve Preclinical Cancer Research

C. Tuggle, J. Cunnick, C. Loving, 2018, Front. Oncol..

Identification of a putative quantitative trait nucleotide in guanylate binding protein 5 for host response to PRRS virus infection

J. Dekkers, S. Carpenter, J. Lunney, 2015, BMC Genomics.

Ectopic HOXA5 expression results in abnormal differentiation, migration and p53-independent cell death of superficial dorsal horn neurons.

C. Tuggle, M. Joksimovic, Matthew A Abbott, 2005, Brain research. Developmental brain research.

Dynamic expression of murine HOXA5 protein in the central nervous system.

C. Tuggle, L. Jeannotte, M. Joksimovic, 2005, Gene expression patterns : GEP.

Animal Cytogenetics and Comparative Mapping

C. Tuggle, M. Yerle, M. Poucke, 2001 .

A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues

Alison L. Van Eenennaam, I. Korf, C. Ernst, 2020, bioRxiv.

Improved annotation of the domestic pig genome through integration of Iso-Seq and RNA-seq data

C. Tuggle, J. Reecy, D. Nonneman, 2019, BMC Genomics.

ANEXdb: an integrated animal ANnotation and microarray EXpression database

Vasant Honavar, Sushain Pandit, Jack Dekkers, 2009, Mammalian Genome.

HinfI polymorphism at the bovine PIT1 locus.

C. Tuggle, C. Schmitz, A. E. Freeman, 1994, Journal of animal science.

Swine models for translational oncological research: an evolving landscape and regulatory considerations

C. Tuggle, K. Schachtschneider, L. Schook, 2021, Mammalian Genome.

Spatial regulation of homeobox gene fusions in the embryonic central nervous system of transgenic mice

C. Tuggle, J. Zákány, M. C. Nguyen-Huu, 1988, Neuron.

Pig genome functional annotation enhances the biological interpretation of complex traits and human disease

M. Lund, C. Ernst, M. Fredholm, 2021, Nature Communications.

Functional annotations of three domestic animal genomes provide vital resources for comparative and agricultural research

Alison L. Van Eenennaam, Hans H. Cheng, P. Flicek, 2021, Nature Communications.

Functional Annotation of Animal Genomes (FAANG): Current Achievements and Roadmap.

C. Tuggle, E. Giuffra, Elisabetta Giuffra, 2019, Annual review of animal biosciences.

Porcine intestinal innate lymphoid cells and lymphocyte spatial context revealed through single-cell RNA sequencing

C. Tuggle, Sathesh K. Sivasankaran, J. Trachsel, 2022, bioRxiv.

The PiGMaP consortium linkage map of the pig (Sus scrofa)

Muladno, A. Jeffreys, M. Groenen, 1995, Mammalian Genome.

Reference Transcriptomes of Porcine Peripheral Immune Cells Created Through Bulk and Single-Cell RNA Sequencing

J. Lunney, C. Tuggle, Sathesh K. Sivasankaran, 2021, bioRxiv.

Region-specific enhancers near two mammalian homeo box genes define adjacent rostrocaudal domains in the central nervous system.

C. Peschle, C. Tuggle, J. Zákány, 1990, Genes & development.

Mapping of the melatonin receptor la (MTNR1A) gene in pigs, sheep, and cattle

D. Pomp, C. Tuggle, M. Rothschild, 1997, Mammalian Genome.

The Prolactin Receptor Gene is Associated with Increased Litter Size In Pigs

C. Tuggle, M. Rothschild, G. Plastow, 1998 .

Prolactin receptor maps to pig Chromosome 16

C. Tuggle, M. Rothschild, A. Vincent, 1997, Mammalian Genome.

A major gene for litter size in pigs.

C. Tuggle, M. Rothschild, D. McLaren, 1994 .

Endometrial gene expression profiling in pregnant Meishan and Yorkshire pigs on day 12 of gestation

J. Lunney, D. Nettleton, C. Tuggle, 2014, BMC Genomics.

Linkage and physical mapping of prolactin to porcine chromosome 7.

C. Tuggle, M. Rothschild, L. Wang, 1998, Animal genetics.

Analysis of pig chromosome 7 genetic markers for growth and carcass performance traits

C. Tuggle, M. Rothschild, T. Yu, 1995 .

Gene Discovery and Functional Genomics in the Pig

M. Soares, T. Casavant, R. Prather, 2001 .

attachment to uterine luminal epithelium porcine conceptus rapid trophoblastic elongation and Identification of differential gene expression during

S. Bauersachs, R. Prather, C. Tuggle, 2015 .

Identification of differential gene expression during porcine conceptus rapid trophoblastic elongation and attachment to uterine luminal epithelium.

C. Tuggle, O. Couture, J. Ross, 2009, Physiological genomics.

Genomic prediction of piglet response to infection with one of two porcine reproductive and respiratory syndrome virus isolates

J. Dekkers, J. Lunney, C. Tuggle, 2018, Genetics Selection Evolution.

Gene expression in tonsils in swine following infection with porcine reproductive and respiratory syndrome virus

J. Dekkers, J. Lunney, C. Tuggle, 2021, BMC Veterinary Research.

Mapping of growth hormone releasing hormone receptor to swine chromosome 18.

C. Tuggle, M. Rothschild, L. Wang, 1997, Animal genetics.

Development of New Placental and Fetal Expressed Sequence Tags (EST) for Gene Discovery in Pig Reproduction

M. Soares, C. Tuggle, S. Malchenko, 2001 .

Assignment of lymphocyte antigen 64 homolog, radioprotective 105 kDa (LY64) gene to porcine chromosome band 16q14 with somatic cell hybrids and linkage mapping

C. Tuggle, S. Zhao, 2003, Cytogenetic and Genome Research.

Transgenic mice ectopically expressing HOXA5 in the dorsal spinal cord show structural defects of the cervical spinal cord along with sensory and motor defects of the forelimb.

C. Tuggle, L. Jeannotte, P. Lueth, 2004, Brain research. Developmental brain research.

Effect of ARTEMIS (DCLRE1C) deficiency and microinjection timing on editing efficiency during somatic cell nuclear transfer and in vitro fertilization using the CRISPR/Cas9 system.

C. Tuggle, J. Ross, B. Hale, 2021, Theriogenology.

Introduction to Systems Biology for Animal Scientists

Vasant G Honavar, C. Tuggle, F. Towfic, 2011 .

Not All SCID Pigs Are Created Equally: Two Natural Mutations Cause Severe Combined Immunodeficiency (SCID) in Pigs

C. Tuggle, 2014 .

High-resolution comparative mapping of pig Chromosome 4, emphasizing the FAT1 region

L. Andersson, D. Pomp, A. Archibald, 2004, Mammalian Genome.

Rapid communication: localization of POU1F1 to bovine, ovine, and caprine 1q21-22.

C. Tuggle, F. A. Ponce de León, J. Woollard, 2000, Journal of animal science.

EST-based gene discovery in pig: virtual expression patterns and comparative mapping to human

Natalie L. Robinson, T. Casavant, T. Scheetz, 2003, Mammalian Genome.

Transcriptional profiling using a novel cDNA array identifies differential gene expression during porcine embryo elongation

D. Nettleton, C. Tuggle, Shuhong Zhao, 2005, Molecular reproduction and development.

Physical and linkage mapping of the lymphocyte antigen 86 (LY86) gene to porcine chromosome 7.

C. Tuggle, S. Zhao, A. Erickson, 2004, Animal Genetics.

Addition of Thirteen Genes to the Porcine Comparative Gene Map Reveals New Regions of Conserved Synteny

C. Tuggle, M. Rothschild, Zhi-Liang Hu, 1999 .

Mapping five new candidate genes in the pig

C. Tuggle, M. Rothschild, M. Yerle, 1998 .

Mapping of the natural resistance-associated macrophage protein 1 (NRAMP1) gene to pig chromosome 15.

C. Tuggle, M. Rothschild, L. Wang, 1998, Animal Genetics.

Rapid communication: cloning of a pig full-length natural resistance associated macrophage protein (NRAMP1) cDNA.

C. Tuggle, C. Schmitz, D. Gingerich-Feil, 1997, Journal of Animal Science.

Mapping genes for fatness and growth on pig chromosome 13: a search in the region close to the pig PIT1 gene

C. Tuggle, M. Rothschild, T. Yu, 1999 .

Genetic markers for screening animals for improved disease resistance ( NRAMP )

C. Tuggle, L. Marklund, 2016 .

Physical mapping of eight pig genes whose expression level is acutely affected by Salmonella challenge.

C. Tuggle, S. Bearson, J. Uthe, 2005, Animal genetics.

SCID pigs: An emerging large animal NK model.

C. Tuggle, J. Cunnick, E. J. Powell, 2017, Journal of rare diseases research & treatment.

NK cells are intrinsically functional in pigs with Severe Combined Immunodeficiency (SCID) caused by spontaneous mutations in the Artemis gene.

J. Dekkers, C. Tuggle, E. Waide, 2016, Veterinary immunology and immunopathology.

CD3ε+ Cells in Pigs With Severe Combined Immunodeficiency Due to Defects in ARTEMIS

J. Dekkers, E. Putz, C. Tuggle, 2020, Frontiers in Immunology.

T Cell Lymphoma and Leukemia in Severe Combined Immunodeficiency Pigs following Bone Marrow Transplantation: A Case Report

J. Dekkers, C. Tuggle, E. Waide, 2017, Front. Immunol..

Not All SCID Pigs Are Created Equally: Two Independent Mutations in the Artemis Gene Cause SCID in Pigs

J. Dekkers, C. Tuggle, E. Waide, 2015, The Journal of Immunology.

Cause SCID in Pigs Gene Artemis Independent Mutations in the Not All SCID Pigs Are Created Equally: Two

J. Dekkers, C. Tuggle, N. Serão, 2015 .

Complementary DNA macroarray analyses of differential gene expression in porcine fetal and postnatal muscle.

C. Ernst, D. Nettleton, C. Tuggle, 2003, Journal of animal science.

Novel Engraftment and T Cell Differentiation of Human Hematopoietic Cells in ART−/− IL2RG−/Y SCID Pigs

J. Dekkers, E. Putz, C. Tuggle, 2020, Frontiers in Immunology.

Creating effective biocontainment facilities and maintenance protocols for raising specific pathogen-free, severe combined immunodeficient (SCID) pigs

J. Dekkers, C. Tuggle, M. Schroyen, 2018, Laboratory animals.

Novel engraftment and T cell differentiation of human hematopoietic cells in Art-/- IL2RG-/ SCID pigs

J. Dekkers, C. Tuggle, M. Kiupel, 2019, bioRxiv.

Porcine signal regulatory protein alpha binds to human CD47 to inhibit phagocytosis: Implications for human hematopoietic stem cell transplantation into severe combined immunodeficient pigs

C. Tuggle, T. Egner, J. Cunnick, 2018, Xenotransplantation.

Analysis of blood leukocytes in a naturally occurring immunodeficiency of pigs shows the defect is localized to B and T cells.

J. Dekkers, C. Tuggle, R. Rowland, 2014, Veterinary immunology and immunopathology.

PLET1 (C11orf34), a highly expressed and processed novel gene in pig and mouse placenta, is transcribed but poorly spliced in human.

M. Soares, T. Casavant, T. Scheetz, 2004, Genomics.

Microarray gene expression profiles of fasting induced changes in liver and adipose tissues of pigs expressing the melanocortin-4 receptor D298N variant.

Dan Nettleton, Weiguo Cai, Long Qu, 2009, Physiological genomics.

Porcine differential gene expression in response to Salmonella enterica serovars Choleraesuis and Typhimurium.

J. Lunney, C. Tuggle, Shuhong Zhao, 2007, Molecular immunology.

Hoxa5 gene regulation: A gradient of binding activity to a brachial spinal cord element.

C. Tuggle, W. Zhou, L. Jeannotte, 1999, Developmental biology.

Distinct Peripheral Blood RNA Responses to Salmonella in Pigs Differing in Salmonella Shedding Levels: Intersection of IFNG, TLR and miRNA Pathways

Dan Nettleton, Ting-Hua Huang, Christopher K. Tuggle, 2011, PloS one.

A directed search for quantitative trait loci on chromosomes 4 and 7 in pigs.

C. Tuggle, M. Rothschild, T. Yu, 1998, Journal of animal science.

The impact of breed and tissue compartment on the response of pig macrophages to lipopolysaccharide

D. Hume, T. Freeman, A. Archibald, 2013, BMC Genomics.

Octamer function in the chicken lambda immunoglobulin light chain promoter

C. Tuggle, S. Lamont, L. Heltemes, 1997, Immunogenetics.

Livestock models in translational medicine.

C. Tuggle, J. Roth, 2015, ILAR journal.

Current transcriptomics in pig immunity research

C. Tuggle, M. Schroyen, 2014, Mammalian Genome.

Integrating comparative expression profiling data and association of SNPs with Salmonella shedding for improved food safety and porcine disease resistance.

J. Dekkers, D. Nettleton, C. Tuggle, 2011, Animal genetics.

THE TRANSCRIPTIONAL RESPONSE TO SALMONELLA INFECTION IN SWINE

J. Lunney, C. Tuggle, Shuhong Zhao, 2005 .

Assignment of porcine ceruloplasmin and v-RAF1 murine viral oncogene homolog 1 to Chromosome 13 by linkage analysis

C. Tuggle, M. Rothschild, H. S. Sun, 1997, Mammalian Genome.

Sequencing, tissue distribution and physical mapping of the porcine homologue of cardiomyopathy associated 3 (CMYA3).

C. Tuggle, K. Li, B. Liu, 2003, Animal genetics.

Pigs with Severe Combined Immunodeficiency Are Impaired in Controlling Influenza A Virus Infection

J. Dekkers, A. Vincent, P. Gauger, 2016, Journal of Innate Immunity.

Cloning and characterization of pig muscle cDNAs by an expressed sequence tag approach

C. Tuggle, C. Schmitz, 1994 .

Detection of gene orthology from gene co-expression and protein interaction networks

Vasant Honavar, M. Heather West Greenlee, Fadi Towfic, 2010, BMC Bioinformatics.

Radiation hybrid comparative mapping between human chromosome 17 and porcine chromosome 12 demonstrates conservation of gene order.

R. Prather, C. Tuggle, C. Genet, 2001, Animal genetics.

High-Resolution Radiation Hybrid Mapping of Human Chromosome 17 Genes to the Pig Genome Extends Gene Order Conservation with Pig Chromosome 12 and Limited Synteny with Pig Chromosome 2

R. Prather, C. Tuggle, C. Genet, 2001 .

Cloning, sequencing and mapping the pig gene for the muscle-specific intermediate filament protein desmin (DES).

C. Ernst, C. Tuggle, L. Marklund, 1999, Animal genetics.

Muscle ESTs II: Cloning, Sequencing, and Mapping the Pig Gene for the Intermediate Filament Protein Desmin

C. Ernst, C. Tuggle, L. Marklund, 1999 .

Human Ovarian Cancer Tumor Formation in Severe Combined Immunodeficient (SCID) Pigs

C. Tuggle, M. Kiupel, J. Ross, 2019, Front. Oncol..

A Comprehensive Protocol for Laparotomy in Swine to Facilitate Ultrasound-Guided Injection into the Fetal Intraperitoneal Space.

C. Tuggle, A. Boettcher, A. Ahrens, 2019, Comparative medicine.

A high-quality annotated transcriptome of swine peripheral blood

J. Dekkers, C. Tuggle, D. Nonneman, 2017, BMC Genomics.

Transcript profiles in longissimus dorsi muscle and subcutaneous adipose tissue: a comparison of pigs with different postweaning growth rates.

C. Tuggle, M. Schroyen, J. Koltes, 2015, Journal of animal science.

Acute systemic inflammatory response to lipopolysaccharide stimulation in pigs divergently selected for residual feed intake

J. Dekkers, C. Tuggle, N. Gabler, 2019, BMC Genomics.

Cdx Protein Interaction with Hoxa5 Regulatory Sequences Contributes to Hoxa5 Regional Expression along the Axial Skeleton

C. Tuggle, J. Lapointe, L. Jeannotte, 2005, Molecular and Cellular Biology.

Associations of natural variation in the CD163 and other candidate genes on host response of nursery pigs to porcine reproductive and respiratory syndrome virus infection

J. Lunney, C. Tuggle, R. Rowland, 2021, Journal of animal science.

Unique genome-wide transcriptome profiles of chicken macrophages exposed to Salmonella-derived endotoxin

D. Nettleton, C. Tuggle, M. Wannemuehler, 2010, BMC Genomics.

TLR4 single nucleotide polymorphisms (SNPs) associated with Salmonella shedding in pigs

C. Tuggle, J. Uthe, M. Cantão, 2014, Journal of Applied Genetics.

Microarray gene expression profiles of fasting induced changes in liver

D. Nettleton, C. Tuggle, L. Anderson, 2009 .

Editorial: Functional Annotation of Animal Genomes

C. Tuggle, E. Giuffra, A. Chamberlain, 2021, Frontiers in Genetics.

A comparative analysis of chromatin accessibility in cattle, pig, and mouse tissues

Alison L. Van Eenennaam, I. Korf, C. Ernst, 2020, BMC Genomics.

Linkage mapping and expression analyses of a novel gene, placentally expressed transcript 1 (PLET1) in the pig.

C. Tuggle, S. Zhao, 2004, Animal Genetics.

Genetic markers for improved disease resistance in animals ( BPI )

C. Tuggle, 2016 .

Integrative profiling of gene expression and chromatin accessibility elucidates specific transcriptional networks in porcine neutrophils

C. Tuggle, M. Schroyen, J. Koltes, 2023, Frontiers in Genetics.

Regulation of the operon encoding ribonucleotide reductase: role of the negative sites in nrd repression

C. Tuggle, J. Fuchs, 1990, Journal of bacteriology.

Rapid communication: SacI restriction fragment length polymorphism in a porcine vascular cellular adhesion molecule (VCAM1) gene.

C. Tuggle, M. Rothschild, C. Schmitz, 1994, Journal of Animal Science.

Endometrial gene expression profiling in pregnant Meishan and Yorkshire pigs on day 12 of gestation

J. Lunney, D. Nettleton, C. Tuggle, 2014, BMC Genomics.

Construction of a multi-tissue cell atlas reveals cell-type-specific regulation of molecular and complex phenotypes in pigs

Fei Wang, O. Madsen, M. Fredholm, 2023, bioRxiv.

Infectivity of GII.4 human norovirus does not differ between T-B-NK+ severe combined immunodeficiency (SCID) and non-SCID gnotobiotic pigs, implicating the role of NK cells in mediation of human norovirus infection.

J. Dekkers, C. Tuggle, L. Saif, 2019, Virus research.

Assessment of the cPAS-based BGISEQ-500 platform for metagenomic sequencing.

Bronwen L. Aken, Ariel S. Schwartz, Osagie G. Izuogu, 2018, GigaScience.

Ten simple rules to ruin a collaborative environment

Shawn F. Dorius, Carolyn J. Lawrence-Dill, Alison L. Van Eenennaam, 2022, PLoS Comput. Biol..

Draft genome of the Marco Polo Sheep (Ovis ammon polii)

Bronwen L. Aken, Ariel S. Schwartz, Osagie G. Izuogu, 1987, bioRxiv.

Structural and functional annotation of the porcine immunome

J. Harrow, T. Hunt, M. Kay, 2013, BMC Genomics.

Successful development of methodology for detection of hapten-specific contact hypersensitivity (CHS) memory in swine

E. Putz, C. Tuggle, M. Palmer, 2019, PloS one.

Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection

J. Steibel, J. Dekkers, J. Lunney, 2015, BMC Genomics.

Structural and functional annotation of the porcine immunome

J. Harrow, T. Hunt, M. Kay, 2013, BMC Genomics.

An improved pig reference genome sequence to enable pig genetics and genomics research

Bronwen L. Aken, Ariel S. Schwartz, Osagie G. Izuogu, 2019, bioRxiv.

Rapid communication: a MspI restriction fragment length polymorphism at the swine PIT-1 locus.

C. Tuggle, M. Rothschild, T. Yu, 1993, Journal of Animal Science.

Quantitative Measurement of PIT1, GH, and PRL mRNA and Circulating Hormone Levels in Pig Families Segregating PIT1 Genotypes

C. Tuggle, L. Anderson, H. S. Sun, 1999 .

Correlating blood immune parameters and a CCT7 genetic variant with the shedding of Salmonella enterica serovar Typhimurium in swine.

D. Nettleton, C. Tuggle, S. Bearson, 2009, Veterinary microbiology.

Immunological implications of a structural analysis of two different porcine IL1β proteins expressed in macrophages and embryos

Andrzej Kloczkowski, Robert L. Jernigan, Michael T. Zimmermann, 2010, BCB '10.

to accelerate genome-to-phenome with the Functional Annotation of Genomes project.

D. Burt, S. Foissac, C. Elsik, 2015 .

Toward a Data Infrastructure for the Plant Cell Atlas.

Timothy L. Tickle, Peter W. Harrison, B. Paten, 2022, Plant physiology.

Mapping of the porcine suppressor of cytokine signalling 3 gene to chromosome 12 using somatic cell and radiation hybrid panels.

C. Tuggle, S. Zhao, 2005, Animal Genetics.

Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding

Adriano S. Arantes, A. Kommadath, C. Tuggle, 2014, BMC Genomics.

Quantitative analysis of the blood transcriptome of young healthy pigs and its relationship with subsequent disease resilience

C. Tuggle, G. Plastow, J. Harding, 2021, BMC genomics.

Contribution to the comparative map between humans and pigs.

G. Tosser-Klopp, C. Tuggle, M. Yerle, 1999, Animal Biotechnology.

Comparative Analysis of Monocyte Subsets in the Pig

A. Archibald, C. Tuggle, R. Kapetanovic, 2013, The Journal of Immunology.

Structural and functional annotation of the porcine immunome

J. Harrow, T. Hunt, M. Kay, 2013, BMC Genomics.

A gene expression atlas of the domestic pig

A. Su, A. Archibald, Chunlei Wu, 2012, BMC Biology.

Novel Engraftment and T Cell Differentiation of Human Hematopoietic Cells in ART−/− IL2RG−/Y SCID Pigs

J. Dekkers, E. Putz, C. Tuggle, 2020, Frontiers in Immunology.

Activation of the transcription factor nuclear factor-kappa B in uterine luminal epithelial cells by interleukin-1 beta 2 : a novel interleukin-1 expressed by the elongating pig conceptus 1 SHORT TITLE : NOVEL PIG CONCEPTUS IL 1 B ACTIVATES UTERINE NFKB

C. Tuggle, D. Mathew, E. M. Newsom, 2015 .

Edinburgh Research Explorer An improved pig reference genome sequence to enable pig genetics and genomics research

Steven G. Schroeder, Bronwen L. Aken, Osagie G. Izuogu, 2022 .

Expression of Collagen Genes in the Cones of Skin in the Duroc/Yorkshire Porcine Model of Fibroproliferative Scarring

C. Tuggle, G. Carrougher, O. Couture, 2008, Journal of Burn Care & Research.

Advances in Swine Transcriptomics

C. Tuggle, O. Couture, Yanfang Wang, 2007, International journal of biological sciences.