B. Southey

发表

Analyses of pig genomes provide insight into porcine demography and evolution

Bronwen L. Aken, J. Harrow, S. Searle, 2012, Nature.

The genome of a songbird

Albert J. Vilella, Andreas R. Pfenning, Miriam K. Konkel, 2010, Nature.

Identification and characterization of alternative exon usage linked glioblastoma multiforme survival

Ahmed Sadeque, S. Rodriguez-Zas, B. Southey, 2012, BMC Medical Genomics.

Controlling the Proportion of False Positives in Multiple Dependent Tests

R. Fernando, J. Dekkers, D. Nettleton, 2004, Genetics.

Honey bee aggression supports a link between gene regulation and behavioral evolution

Saurabh Sinha, Cédric Alaux, Gene E Robinson, 2009, Proceedings of the National Academy of Sciences.

Seasonal adaptations of the hypothalamo-neurohypophyseal system of the dromedary camel

Mark F. Rogers, A. A. A. Rahman, B. Southey, 2019, PloS one.

Interval and composite interval mapping of somatic cell score, yield, and components of milk in dairy cattle.

H. Lewin, S. Rodriguez-Zas, B. Southey, 2002, Journal of dairy science.

Multifactorial Understanding of Ion Abundance in Tandem Mass Spectrometry Experiments.

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2013, Journal of proteomics & bioinformatics.

Comparative analysis of neuropeptide cleavage sites in human, mouse, rat, and cattle

A. Tegge, S. Rodriguez-Zas, B. Southey, 2008, Mammalian Genome.

Evaluation of Database Search Programs for Accurate Detection of Neuropeptides in Tandem Mass Spectrometry Experiments

Bruce R. Southey, Per E. Andrén, Sandra L. Rodriguez-Zas, 2012, Journal of proteome research.

Genomic signatures of evolutionary transitions from solitary to group living

Matthew E. Hudson, Evgeny M. Zdobnov, Daniel Hamacher, 2015, Science.

Microarray Analysis of Natural Socially Regulated Plasticity in Circadian Rhythms of Honey Bees

G. Robinson, S. Rodriguez-Zas, B. Southey, 2012, Journal of biological rhythms.

Sequence analysis Prediction of neuropeptide cleavage sites in insects

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2008 .

Identification of prohormones and pituitary neuropeptides in the African cichlid, Astatotilapia burtoni

R. Fernald, B. Southey, J. Sweedler, 2016, BMC Genomics.

Diet and endocrine effects on behavioral maturation-related gene expression in the pars intercerebralis of the honey bee brain

G. Robinson, S. Rodriguez-Zas, B. Southey, 2015, Journal of Experimental Biology.

Complete Blood Count Analysis on Beef Cattle Exposed to Fescue Toxicity and Rumen-Protected Niacin Supplementation

S. Rodriguez-Zas, B. Southey, R. Muntifering, 2021, Animals : an open access journal from MDPI.

Exploring Exercise- and Context-Induced Peptide Changes in Mice by Quantitative Mass Spectrometry

B. Southey, J. Sweedler, E. Romanova, 2018, ACS omega.

Gene Network Dysregulation in the Trigeminal Ganglia and Nucleus Accumbens of a Model of Chronic Migraine-Associated Hyperalgesia

Alvaro G. Hernandez, S. Rodriguez-Zas, B. Southey, 2018, Front. Syst. Neurosci..

Accurate Assignment of Significance to Neuropeptide Identifications Using Monte Carlo K-Permuted Decoy Databases

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2014, PloS one.

Exploring the Sea Urchin Neuropeptide Landscape by Mass Spectrometry

B. Southey, J. Sweedler, L. Schoofs, 2018, Journal of The American Society for Mass Spectrometry.

Characterization of the prohormone complement in cattle using genomic libraries and cleavage prediction approaches

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2009, BMC Genomics.

ComparativeAnalysisofBinaryLogisticRegression toArtificialeural etworksinPredictingPrecursorSequenceCleavage

A. Tegge, S. Rodriguez-Zas, B. Southey, 2007 .

Genome-wide Census and Expression Profiling of Chicken Neuropeptide and Prohormone Convertase Genes

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2022 .

Peptide identifications and false discovery rates using different mass spectrometry platforms.

B. Southey, J. Sweedler, E. Romanova, 2018, Talanta.

Therapy-, gender- and race-specific microRNA markers, target genes and networks related to glioblastoma recurrence and survival.

S. Rodriguez-Zas, B. Southey, N. Serão, 2011, Cancer genomics & proteomics.

First survey and functional annotation of prohormone and convertase genes in the pig

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2012, BMC Genomics.

Terpenoid Backbone Biosynthesis among Pig Hippocampal Pathways Impacted by Stressors

S. Rodriguez-Zas, B. Southey, Rodney W. Johnson, 2022, Genes.

Transferase activity function and system development process are critical in cattle embryo development

R. E. Everts, H. Lewin, S. Rodriguez-Zas, 2011, Functional & Integrative Genomics.

Jersey steer ruminal papillae histology and nutrigenomics with diet changes

S. Rodriguez-Zas, B. Southey, J. Starkey, 2019, Journal of animal physiology and animal nutrition.

Genome-wide analysis of metritis status and time-to-metritis

G. Rosa, S. Rodriguez-Zas, B. Southey, 2018 .

Prediction of neuropeptide cleavage sites in insects

Bruce R. Southey, Sandra L. Rodriguez-Zas, Jonathan V. Sweedler, 2008, Bioinform..

Probing the Production of Amidated Peptides following Genetic and Dietary Copper Manipulations

R. Mains, B. Southey, J. Sweedler, 2011, PloS one.

Changes in Neuropeptide Prohormone Genes among Cetartiodactyla Livestock and Wild Species Associated with Evolution and Domestication

S. Rodriguez-Zas, B. Southey, 2022, Veterinary sciences.

Prediction of neuropeptide prohormone cleavages with application to RFamides

Bruce R. Southey, Sandra L. Rodriguez-Zas, Jonathan V. Sweedler, 2006, Peptides.

Quantitative peptidomics reveal brain peptide signatures of behavior

Gene E. Robinson, Bruce R. Southey, Seth A. Ament, 2009, Proceedings of the National Academy of Sciences.

Survival analysis of lamb mortality in a terminal sire composite population.

S. Rodriguez-Zas, B. Southey, K. Leymaster, 2001, Journal of animal science.

Prefrontal Cortex Response to Prenatal Insult and Postnatal Opioid Exposure

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2022, Genes.

Effects of graded inclusion levels of raw garbanzo beans on apparent total tract digestibility, fecal quality, and fecal fermentative end-products and microbiota in extruded feline diets.

S. Rodriguez-Zas, B. Southey, M. D. de Godoy, 2021, Journal of animal science.

The Combined Effect of Weaning Stress and Immune Activation during Pig Gestation on Serum Cytokine and Analyte Concentrations

S. Rodriguez-Zas, B. Southey, Rodney W. Johnson, 2021, Animals : an open access journal from MDPI.

Biochemistry and Immune Biomarkers Indicate Interacting Effects of Pre- and Postnatal Stressors in Pigs across Sexes

S. Rodriguez-Zas, B. Southey, Rodney W. Johnson, 2021, Animals : an open access journal from MDPI.

The zebra finch neuropeptidome: prediction, detection and expression

Jonathan V Sweedler, Sarah E. London, Andinet Amare, 2010, BMC Biology.

Differential Transcriptome Networks between IDO1-Knockout and Wild-Type Mice in Brain Microglia and Macrophages

Scott E. Nixon, Alvaro G. Hernandez, R. Dantzer, 2016, PloS one.

Bioeconomic evaluation of sow longevity and profitability.

S. Rodriguez-Zas, B. Southey, R. Knox, 2003, Journal of animal science.

Integration of sequence and functional information to identify and annotate neuropeptides in the pig genome

Malik N. Akhtar, Bruce R. Southey, Jonathan V. Sweedler, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Characterization of Genomic Variants Associated with Scout and Recruit Behavioral Castes in Honey Bees Using Whole-Genome Sequencing

Zhengzheng S Liang, G. Robinson, Ruiqiang Li, 2016, PloS one.

Cell cycle and aging, morphogenesis, and response to stimuli genes are individualized biomarkers of glioblastoma progression and survival

S. Rodriguez-Zas, B. Southey, J. Beever, 2011, BMC Medical Genomics.

Bivariate Genome-Wide Association Analysis of the Growth and Intake Components of Feed Efficiency

S. Rodriguez-Zas, B. Southey, N. Serão, 2013, PloS one.

Neurogenomic signatures of spatiotemporal memories in time-trained forager honey bees

Nicholas L. Naeger, G. Robinson, S. Rodriguez-Zas, 2011, Journal of Experimental Biology.

Modulatory Communication Signal Performance Is Associated with a Distinct Neurogenomic State in Honey Bees

G. Robinson, S. Rodriguez-Zas, B. Southey, 2009, PloS one.

Alternative Splicing Mechanisms Underlying Opioid-Induced Hyperalgesia

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2021, Genes.

Lasting and Sex-Dependent Impact of Maternal Immune Activation on Molecular Pathways of the Amygdala

Alvaro G. Hernandez, S. Rodriguez-Zas, B. Southey, 2020, Frontiers in Neuroscience.

Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle

S. Rodriguez-Zas, B. Southey, N. Serão, 2013, BMC Genetics.

Disruption of Alternative Splicing in the Amygdala of Pigs Exposed to Maternal Immune Activation

S. Rodriguez-Zas, B. Southey, Rodney W. Johnson, 2021, Immuno.

Long-Lasting Impact of Maternal Immune Activation and Interaction With a Second Immune Challenge on Pig Behavior

S. Rodriguez-Zas, B. Southey, Rodney W. Johnson, 2020, Frontiers in Veterinary Science.

Ewe productivity of Booroola Merino-Rambouillet crossbred sheep during early stages of the introgression of the FecB allele into a Rambouillet population

B. Southey, David L. Thomas, R. G. Gottfredson, 2002 .

Detection of quantitative trait loci influencing dairy traits using a model for longitudinal data.

H. Lewin, S. Rodriguez-Zas, B. Southey, 2002, Journal of dairy science.

Evaluation of approaches to detect quantitative trait loci for growth, carcass, and meat quality on swine chromosomes 2, 6, 13, and 18. I. Univariate outbred F2 and sib-pair analyses.

S. Rodriguez-Zas, B. Southey, J. Beever, 2005, Journal of animal science.

Impact of biological and economic variables on optimal parity for replacement in swine breed-to-wean herds.

S. Rodriguez-Zas, B. Southey, G. Schnitkey, 2006, Journal of Animal Science.

Resistance and resilience to gastro-intestinal nematode parasites and relationships with productivity of Red Maasai, Dorper and Red Maasai X Dorper crossbred lambs in the sub-humid tropics

S. Rodriguez-Zas, B. Southey, R. Baker, 2003 .

Comparative Analysis of Neuropeptides in Homologous Interneurons and Prohormone Annotation in Nudipleuran Sea Slugs

R. Gillette, B. Southey, J. Sweedler, 2021, Frontiers in Physiology.

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2019, Molecular Neurobiology.

Linear mixed effects models for microarray gene expression data.

S. Rodriguez-Zas, B. Southey, 2002 .

Advancing the understanding of the embryo transcriptome co-regulation using meta-, functional, and gene network analysis tools.

S. Rodriguez-Zas, B. Southey, S L Rodriguez-Zas, 2008, Reproduction.

Microglia Transcriptome Changes in a Model of Depressive Behavior after Immune Challenge

Scott E. Nixon, Alvaro G. Hernandez, R. Dantzer, 2016, PloS one.

A Python Analytical Pipeline to Identify Prohormone Precursors and Predict Prohormone Cleavage Sites

Bruce R. Southey, Sandra L. Rodriguez-Zas, Jonathan V. Sweedler, 2008, Frontiers Neuroinformatics.

Comparative analysis of binary logistic regression to artificial neural networks in predicting precursor sequence cleavage

A. Tegge, S. Rodriguez-Zas, J.V. Sweedler, 2007, 2007 IEEE International Conference on Bioinformatics and Biomedicine Workshops.

Enhanced Prediction of Cleavage in Bovine Precursor Sequences

Allison N. Tegge, Bruce R. Southey, Sandra L. Rodriguez-Zas, 2007, ISBRA.

Characterization of the prohormone complement in Amphiprion and related fish species integrating genome and transcriptome assemblies

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2020, PloS one.

Chapter 5 Bioinformatics for Prohormone and Neuropeptide Discovery

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2018 .

Bioinformatics for Prohormone and Neuropeptide Discovery.

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2018, Methods in molecular biology.

Evaluation of approaches to detect quantitative trait loci for growth, carcass, and meat quality on swine chromosomes 2, 6, 13, and 18. II. Multivariate and principal component analyses.

S. Rodriguez-Zas, B. Southey, J. Beever, 2005, Journal of animal science.

Interplay Between Amphetamine and Activity Level in Gene Networks of the Mouse Striatum

S. Rodriguez-Zas, B. Southey, T. Gonçalves, 2018, Bioinformatics and biology insights.

Hierarchical modeling of alternative exon usage associations with survival

Bruce R. Southey, Sandra L. Rodriguez-Zas, Ahmed Sadeque, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).

Hippocampal Changes Elicited by Metabolic and Inflammatory Stressors following Prenatal Maternal Infection

S. Rodriguez-Zas, B. Southey, Rodney W. Johnson, 2022, Genes.

Impact of Weaning and Maternal Immune Activation on the Metabolism of Pigs

S. Rodriguez-Zas, B. Southey, Rodney W. Johnson, 2021, Frontiers in Molecular Biosciences.

Interacting impact of maternal inflammatory response and stress on the amygdala transcriptome of pigs

Alvaro G. Hernandez, S. Rodriguez-Zas, B. Southey, 2021, G3.

Effects of maternal immune activation in porcine transcript isoforms of neuropeptide and receptor genes

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2021, Journal of integrative neuroscience.

Competing risks analysis of lamb mortality in a terminal sire composite population.

S. Rodriguez-Zas, B. Southey, K. Leymaster, 2004, Journal of animal science.

Discrete time survival analysis of lamb mortality in a terminal sire composite population.

S. Rodriguez-Zas, B. Southey, K. Leymaster, 2003, Journal of animal science.

Brain region-dependent gene networks associated with selective breeding for increased voluntary wheel-running behavior

T. Garland, S. Rodriguez-Zas, B. Southey, 2018, PloS one.

Use of Legumes and Yeast as Novel Dietary Protein Sources in Extruded Canine Diets

S. Rodriguez-Zas, B. Southey, M. D. de Godoy, 2021, Frontiers in Veterinary Science.

Ancient grains as novel dietary carbohydrate sources in canine diets

S. Rodriguez-Zas, B. Southey, M. D. de Godoy, 2021, Journal of animal science.

Quantitative peptidomics for discovery of circadian-related peptides from the rat suprachiasmatic nucleus.

Leonid Zamdborg, Ji Eun Lee, Jonathan V Sweedler, 2013, Journal of proteome research.

Bridging neuropeptidomics and genomics with bioinformatics: Prediction of mammalian neuropeptide prohormone processing.

Jonathan V Sweedler, Tyler A Zimmerman, Amanda B Hummon, 2006, Journal of proteome research.

Cerebellum Transcriptome of Mice Bred for High Voluntary Activity Offers Insights into Locomotor Control and Reward-Dependent Behaviors

Alvaro G. Hernandez, T. Garland, S. Rodriguez-Zas, 2016, PloS one.

Miscanthus Grass as a Novel Functional Fiber Source in Extruded Feline Diets

S. Rodriguez-Zas, B. Southey, F. He, 2021, Frontiers in Veterinary Science.

Voluntary Wheel Running Reverses Age-Induced Changes in Hippocampal Gene Expression

R. Dantzer, S. Rodriguez-Zas, B. Southey, 2011, PloS one.

White and Red Sorghum as Primary Carbohydrate Sources in Extruded Diets of Felines

S. Rodriguez-Zas, B. Southey, C. Parsons, 2021, Frontiers in Veterinary Science.

Semiparametric approach to characterize unique gene expression trajectories across time

Gene E Robinson, Charles W Whitfield, G. Robinson, 2006, BMC Genomics.

Comparative brain transcriptomic analyses of scouting across distinct behavioural and ecological contexts in honeybees

Gene E. Robinson, Bruce R. Southey, Sandra L. Rodriguez-Zas, 2014, Proceedings of the Royal Society B: Biological Sciences.

Progeny testing bulls for susceptibility to facial eczema

B. Southey, C. Morris, B. Smith, 1991 .

Enhanced Understanding of Molecular Interactions and Function Underlying Pain Processes Through Networks of Transcript Isoforms, Genes, and Gene Families

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2021, Advances and applications in bioinformatics and chemistry : AABC.

AABC_A_284986 49..69

B. Southey, J. Sweedler, Pan Zhang, 2021 .

NeuroPred: a tool to predict cleavage sites in neuropeptide precursors and provide the masses of the resulting peptides

Bruce R. Southey, Sandra L. Rodriguez-Zas, Jonathan V. Sweedler, 2006, Nucleic Acids Res..

Genes Participating in the Ensheathment of Neurons Are Affected by Postnatal Stress and Maternal Immune Activation in the Pituitary Gland

S. Rodriguez-Zas, B. Southey, Rodney W. Johnson, 2023, Genes.

Advancing the understanding of behaviors associated with Bacille Calmette Guérin infection using multivariate analysis

Scott E. Nixon, R. Dantzer, S. Rodriguez-Zas, 2015, Brain, Behavior, and Immunity.

Disruption of microglia histone acetylation and protein pathways in mice exhibiting inflammation-associated depression-like symptoms

Scott E. Nixon, R. Dantzer, S. Rodriguez-Zas, 2018, Psychoneuroendocrinology.

Comparing Label-Free Quantitative Peptidomics Approaches to Characterize Diurnal Variation of Peptides in the Rat Suprachiasmatic Nucleus

Leonid Zamdborg, Ji Eun Lee, Martha U. Gillette, 2013, Analytical chemistry.

Chemical composition of selected insect meals and their effect on apparent total tract digestibility, fecal metabolites and microbiota of adult cats fed insect-based retorted diets.

Y. Hu, S. Rodriguez-Zas, B. Southey, 2022, Journal of animal science.

Alternative Splicing of Neuropeptide Prohormone and Receptor Genes Associated with Pain Sensitivity Was Detected with Zero-Inflated Models

S. Rodriguez-Zas, B. Southey, 2022, Biomedicines.

Co-expression networks uncover regulation of splicing and transcription markers of disease.

S. Rodriguez-Zas, B. Southey, Pan Zhang, 2020, Proceedings of the ... annual International Conference on BioInformatics and Computational Biology.

Single nucleotide polymorphisms and haplotypes associated with feed efficiency in beef cattle

S. Rodriguez-Zas, B. Southey, N. Serão, 2013, BMC Genetics.

Understanding the impact of fractionation and dynamic exclusion on proteomics

Scott E. Nixon, S. Rodriguez-Zas, B. Southey, 2014, Bioinformatics and Computational Biology.

Discrete molecular states in the brain accompany changing responses to a vocal signal

B. Southey, J. Sweedler, S. Dong, 2009, Proceedings of the National Academy of Sciences.

Influence of Maternal Immune Activation and Stressors on the Hippocampal Metabolome

S. Rodriguez-Zas, B. Southey, Rodney W. Johnson, 2023, Metabolites.

Identification of best indicators of peptide-spectrum match using a permutation resampling approach

Malik N. Akhtar, Bruce R. Southey, Per E. Andrén, 2014, J. Bioinform. Comput. Biol..

Advancing the understanding of the embryo transcriptome co-regulation using meta-, functional , and gene network analysis tools

S. Rodriguez-Zas, B. Southey, Y. Ko, 2008 .

Opioid-Induced Hyperalgesia Is Associated with Dysregulation of Circadian Rhythm and Adaptive Immune Pathways in the Mouse Trigeminal Ganglia and Nucleus Accumbens

S. Rodriguez-Zas, B. Southey, J. Sweedler, 2019, Molecular Neurobiology.

Genome-wide census and expression profiling of chicken neuropeptide and prohormone convertase genes

S. Rodriguez-Zas, B. Southey, Kristin Delfino, 2010, Neuropeptides.

Cell cycle and aging, morphogenesis, and response to stimuli genes are individualized biomarkers of glioblastoma progression and survival

S. Rodriguez-Zas, B. Southey, J. Beever, 2011, BMC Medical Genomics.

Meta-analysis of genome-wide expression patterns associated with behavioral maturation in honey bees

Gene E Robinson, G. Robinson, S. Rodriguez-Zas, 2008, BMC Genomics.

Genomic signatures of evolutionary transitions from solitary to group living

Robert M. Waterhouse, Seth M. Barribeau, Sarah D. Kocher, 2015, Science.

Comparison of tandem mass spectrometry search methods to identify neuropeptides

Malik N. Akhtar, Bruce R. Southey, Sandra L. Rodriguez-Zas, 2011, 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW).