K. Tsafou

发表

DISEASES: Text mining and data integration of disease–gene associations

Janos X. Binder, L. Jensen, Sune Pletscher-Frankild, 2014, bioRxiv.

Targeting Intrinsically Disordered Transcription Factors: Changing the Paradigm.

S. Metallo, K. Tsafou, P. Tiwari, 2018, Journal of molecular biology.

DISEASES: Text mining and data integration of disease–gene associations

Janos X. Binder, L. Jensen, Sune Pletscher-Frankild, 2014, bioRxiv.

Phosphoproteomics of Primary Cells Reveals Druggable Kinase Signatures in Ovarian Cancer

S. Brunak, L. Jensen, J. Olsen, 2017, Cell reports.

Human brain organoids reveal accelerated development of cortical neuron classes as a shared feature of autism risk genes

Sean K. Simmons, Amanda J. Kedaigle, J. Levin, 2020, bioRxiv.

Comprehensive comparison of large-scale tissue expression datasets

Christian Stolte, Lars Juhl Jensen, Sune Pletscher-Frankild, 2015, bioRxiv.

BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain.

Gary D Bader, Shayne D. Wierbowski, Graham L. Cromar, 2020, Cell systems.

Macromolecular Connectivity Landscape of Mammalian Brain

Gary D Bader, Shayne D. Wierbowski, A. Emili, 2018 .

DISEASES v1 (human, knowledge, filtered)

Lars Juhl Jensen, Sune Pletscher-Frankild, Janos X. Binder, 2015 .

Combinatorial Drug Screening Identifies Ewing Sarcoma–specific Sensitivities

Søren Brunak, Theodore Papamarkou, Giulio Superti-Furga, 2016, Molecular Cancer Therapeutics.

Comprehensive comparison of large-scale tissue expression datasets

Christian Stolte, Lars Juhl Jensen, Sune Pletscher-Frankild, 2015, bioRxiv.

TISSUES v1 (human, text mining, filtered)

Christian Stolte, Lars Juhl Jensen, Sune Pletscher-Frankild, 2015 .

TISSUES v1 (human, text mining, full)

Christian Stolte, Lars Juhl Jensen, Sune Pletscher-Frankild, 2015 .

COMPARTMENTS v1 (fly, text mining)

Christian Stolte, Lars Juhl Jensen, Reinhard Schneider, 2015 .

COMPARTMENTS v1 (worm, text mining)

Christian Stolte, Lars Juhl Jensen, Reinhard Schneider, 2015 .

COMPARTMENTS v1 (mouse, text mining)

Christian Stolte, Lars Juhl Jensen, Sune Pletscher-Frankild, 2015 .

DISEASES v1 (human, text mining, full)

Lars Juhl Jensen, Sune Pletscher-Frankild, Janos X. Binder, 2015 .

STRING v10: protein–protein interaction networks, integrated over the tree of life

Davide Heller, Damian Szklarczyk, Christian von Mering, 2014, Nucleic Acids Res..

Using protein interaction networks to identify cancer dependencies from tumor genome data

Heiko Horn, Kasper Lage, Christian Fagre, 2020, bioRxiv.

Autism genes converge on asynchronous development of shared neuron classes

Neville E. Sanjana, Sean K. Simmons, Amanda J. Kedaigle, 2022, Nature.

Protein interaction studies in human induced neurons indicate convergent biology underlying autism spectrum disorders

Yu-Han H. Hsu, K. Lage, K. Eggan, 2023, Cell genomics.

INTERACTION STUDIES OF RISK PROTEINS IN HUMAN INDUCED NEURONS REVEAL CONVERGENT BIOLOGY AND NOVEL MECHANISMS UNDERLYING AUTISM SPECTRUM DISORDERS

K. Lage, K. Eggan, A. Smit, 2021, European Neuropsychopharmacology.

Using brain cell-type-specific protein interactomes to interpret genetic data in schizophrenia

Yu-Han H. Hsu, S. Carr, K. Lage, 2021, medRxiv.

Lapatinib potentiates cytotoxicity of YM155 in neuroblastoma via inhibition of the ABCB1 efflux transporter

S. Brunak, G. Superti-Furga, W. Kolch, 2017, Scientific Reports.

Integrative Systems Biology

Lars Juhl Jensen, K. Tsafou, L. Jensen, 2016 .

COMPARTMENTS: unification and visualization of protein subcellular localization evidence

Christian Stolte, Lars Juhl Jensen, Reinhard Schneider, 2014, Database J. Biol. Databases Curation.

Reconstruction of the experimentally supported human protein interactome: what can we learn?

Evangelos Theodoridis, Athanasios K. Tsakalidis, Kalliopi Tsafou, 2013, BMC Systems Biology.

Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation

Heiko Horn, Dorte B. Bekker-Jensen, Jesper V. Olsen, 2015, Science Signaling.

Cell-type specific developmental defects in PTEN-mutant cortical organoids converge on abnormal circuit activity

Amanda J. Kedaigle, J. Levin, X. Adiconis, 2022, bioRxiv.

The second European interdisciplinary Ewing sarcoma research summit – A joint effort to deconstructing the multiple layers of a complex disease

Nathan C. Sheffield, P. Meltzer, P. Sorensen, 2016, Oncotarget.

Using brain cell-type-specific protein interactomes to interpret neurodevelopmental genetic signals in schizophrenia

Yu-Han H. Hsu, K. Eggan, M. Schenone, 2023, iScience.

The cGAS-STING pathway regulates microglial chemotaxis in genome instability

K. Tsafou, M. Dezfouli, P. Thornton, 2023, bioRxiv.

BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain.

Gary D Bader, Shayne D. Wierbowski, Graham L. Cromar, 2020, Cell systems.