Y. Cui

发表

Organization of the Caenorhabditis elegans small non-coding transcriptome: genomic features, biogenesis, and expression.

Baoyan Bai, D. Bu, Yi Zhao, 2005, Genome research.

Functional impacts of non‐synonymous single nucleotide polymorphisms: Selective constraint and structural environments

Y. Cui, Lei Bao, Yan Cui, 2006, FEBS letters.

Integrative Analysis of Somatic Mutations Altering MicroRNA Targeting in Cancer Genomes

Jesse D. Ziebarth, Y. Cui, A. Bhattacharya, 2012, PloS one.

Differential gene expression analysis reveals novel genes and pathways in pediatric septic shock patients

Y. Cui, R. Kamaleswaran, Akram Mohammed, 2019, Scientific Reports.

Differential gene expression analysis reveals novel genes and pathways in pediatric septic shock patients

Y. Cui, R. Kamaleswaran, Akram Mohammed, 2019, bioRxiv.

Functional Analysis of Genetic Variants and Somatic Mutations Impacting MicroRNA-Target Recognition: Bioinformatics Resources.

Jesse D. Ziebarth, Y. Cui, A. Bhattacharya, 2019, Methods in molecular biology.

Bioinformatics Tools for Gene Function Prediction

Y. Cui, Yan Cui, 2012 .

transcriptome: Genomic features, biogenesis, and expression small non-coding Caenorhabditis elegans Organization of the

Baoyan Bai, D. Bu, Yi Zhao, 2006 .

Functional impacts of non-synonymous single nucleotide polymorphisms : Selective constraint and structural environments

Y. Cui, Lei Bao, Yan Cui, 2006 .

Genetic control of weight loss during pneumonic Burkholderia pseudomallei infection.

Mark A. Miller, Robert W. Williams, Y. Cui, 2014, Pathogens and disease.

An integrative genomics strategy for systematic characterization of genetic loci modulating phenotypes.

Robert W. Williams, Lu Lu, Y. Cui, 2007, Human molecular genetics.

Treatment- and Population-Dependent Activity Patterns of Behavioral and Expression QTLs

Jesse D. Ziebarth, Robert W. Williams, Lu Lu, 2012, PloS one.

Pre‐transplant predictors of one yr weight gain after kidney transplantation

Y. Cui, F. Thomas, A. Cashion, 2014, Clinical transplantation.

Proceedings of the 15th Annual UT-KBRIN Bioinformatics Summit 2016

Kelly L. Sovacool, Benjamin J. Harrison, Gavin R. Oliver, 2016, BMC Bioinformatics.

The Genetic Dissection of Ace2 Expression Variation in the Heart of Murine Genetic Reference Population

J. Towbin, Lu Lu, Y. Cui, 2020, Frontiers in Cardiovascular Medicine.

Deep transfer learning provides a Pareto improvement for multiethnic genomic prediction of diseases

Y. Cui, Yan Gao, 2022, bioRxiv.

Deep transfer learning provides a Pareto improvement for multi-ancestral clinico-genomic prediction of diseases

Y. Cui, Yan Gao, Yan Cui, 2022, bioRxiv.

Optimal Feature Selection using Fuzzy Combination of Feature Subset for Transcriptome Data

Yan Cui, Vikas Singh, Nishchal K. Verma, 2018, 2018 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE).

Multiscalar genetic pathway modeling with hybrid Bayesian networks

Jesse D. Ziebarth, Y. Cui, Yan Cui, 2019, WIREs Computational Statistics.

Precise Network Modeling of Systems Genetics Data Using the Bayesian Network Webserver.

Jesse D. Ziebarth, Yan Cui, Jesse D Ziebarth, 2017, Methods in molecular biology.

CbGRiTS: cerebellar gene regulation in time and space.

Yan Cui, Mingzhou Song, Ramin Homayouni, 2015, Developmental biology.

Expression QTL Modules as Functional Components Underlying Higher-Order Phenotypes

Xuefeng Xia, Y. Cui, Lei Bao, 2010, PloS one.

PolymiRTS Database: linking polymorphisms in microRNA target sites with complex traits

Ligang Wu, Mi Zhou, Yan Cui, 2006, Nucleic Acids Res..

Integrative genetic analysis of transcription modules: towards filling the gap between genetic loci and inherited traits.

Yan Cui, Mi Zhou, Lu Lu, 2006, Human molecular genetics.

Combining gene expression QTL mapping and phenotypic spectrum analysis to uncover gene regulatory relationships

Yan Cui, Ramin Homayouni, Mi Zhou, 2006, Mammalian Genome.

Inferring gene transcriptional modulatory relations: a genetical genomics approach.

Yan Cui, Mi Zhou, Lu Lu, 2005, Human molecular genetics.

CTCFBSDB 2.0: a database for CTCF-binding sites and genome organization

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2012, Nucleic Acids Res..

Gene-by-environment modulation of lifespan and weight gain in the murine BXD family

Jesse D. Ziebarth, Arthur G. Centeno, Megan K. Mulligan, 2021, Nature Metabolism.

Profiling Caenorhabditis elegans non-coding RNA expression with a combined microarray

Yan Cui, Geir Skogerbø, Runsheng Chen, 2006, Nucleic acids research.

SomamiR 2.0: a database of cancer somatic mutations altering microRNA–ceRNA interactions

Yan Cui, Anindya Bhattacharya, Y. Cui, 2015, Nucleic Acids Res..

CTCFBSDB: a CTCF-binding site database for characterization of vertebrate genomic insulators

Mi Zhou, Yan Cui, Lei Bao, 2007, Nucleic Acids Res..

nsSNPAnalyzer: identifying disease-associated nonsynonymous single nucleotide polymorphisms

Mi Zhou, Yan Cui, Lei Bao, 2005, Nucleic Acids Res..

Prediction of the phenotypic effects of non-synonymous single nucleotide polymorphisms using structural and evolutionary information

Yan Cui, Lei Bao, Y. Cui, 2005, Bioinform..

Systematic Analysis of microRNA Targeting Impacted by Small Insertions and Deletions in Human Genome

Yan Cui, Jesse D. Ziebarth, Y. Cui, 2012, PloS one.

miR2GO: comparative functional analysis for microRNAs

Yan Cui, Anindya Bhattacharya, Y. Cui, 2015, Bioinform..

In silico mapping of polymorphic miRNA–mRNA interactions in autoimmune thyroid diseases

Yan Cui, Y. Cui, Yan Cui, 2014, Autoimmunity.

Systems genetics analysis of molecular pathways underlying ethanol-induced behavioral phenotypes

Jesse D. Ziebarth, Robert W. Williams, Lu Lu, 2010, 2010 Biomedical Sciences and Engineering Conference.

L. Ling, Runsheng Chen, Y. Cui, 2004, Journal of biological physics.

SomamiR: a database for somatic mutations impacting microRNA function in cancer

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2012, Nucleic Acids Res..

Systematic Prediction of the Impacts of Mutations in MicroRNA Seed Sequences

Yan Cui, Anindya Bhattacharya, Y. Cui, 2017, J. Integr. Bioinform..

Transfer Learning for Molecular Cancer Classification Using Deep Neural Networks

Yan Cui, Vikas Singh, Chandan Kumar, 2019, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Host Genetics and Chlamydia Disease: Prediction and Validation of Disease Severity Mechanisms

Jesse D. Ziebarth, Robert W. Williams, Lu Lu, 2012, PloS one.

PolymiRTS Database 2.0: linking polymorphisms in microRNA target sites with human diseases and complex traits

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2011, Nucleic Acids Res..

Proteome-wide analysis of protein function composition reveals the clustering and phylogenetic properties of organisms.

L. Ling, Runsheng Chen, Y. Cui, 2002, Molecular phylogenetics and evolution.

PolymiRTS Database 3.0: linking polymorphisms in microRNAs and their target sites with human diseases and biological pathways

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2013, Nucleic Acids Res..

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics

Eun Kyong Shin, Kazi I. Zaman, Ethan G. Toney, 2017, BMC Bioinformatics.

Genetic Dissection of the Regulatory Mechanisms of Ace2 in the Infected Mouse Lung

Robert W. Williams, K. Schughart, R. Baric, 2021, Frontiers in Immunology.

Host Genes and Resistance/Sensitivity to Military Priority Pathogens

Mark A. Miller, Robert W. Williams, M. Bix, 2013 .

Feature Ranking using Robust Fuzzy Score Function for Gene Expression Data

Teena Sharma, Yan Cui, Nishchal K Verma, 2019, 2019 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE).

Proceedings of the 16th Annual UT-KBRIN Bioinformatics Summit 2016: bioinformatics

Hunter N. B. Moseley, Eric C. Rouchka, Jerzy W. Jaromczyk, 2017, BMC Bioinformatics.

GeneInfoViz: Constructing and visualizing gene relation networks

Mi Zhou, Yan Cui, Y. Cui, 2004, Silico Biol..

Bayesian Network Webserver: a comprehensive tool for biological network modeling

Yan Cui, Anindya Bhattacharya, Jesse D. Ziebarth, 2013, Bioinform..

Characterizing modifier genes of cardiac fibrosis phenotype in hypertrophic cardiomyopathy.

Robert W. Williams, Lu Lu, Y. Cui, 2021, International journal of cardiology.