W. Dawson

发表

Coarse-grained modeling of RNA 3D structure.

J. Bujnicki, W. Dawson, M. Maciejczyk, 2016, Methods.

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

J. Bujnicki, K. Rother, W. Dawson, 2015, Nucleic acids research.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.

A new entropy model for RNA: part IV, The Minimum Free Energy (mFE) and the thermodynamically most-probable folding pathway (TMPFP)

W. Dawson, G. Kawai, 2015 .

A new entropy model for RNA : part IV , The Minimum Free Energy and the thermodynamically most-probable folding pathway

W. Dawson, G. Kawai, 2012 .

Prediction of RNA Pseudoknots Using Heuristic Modeling with Mapping and Sequential Folding

W. Dawson, G. Kawai, Kazuya Fujiwara, 2007, PloS one.

A physical origin for functional domain structure in nucleic acids as evidenced by cross-linking entropy: I.

W. Dawson, K. Suzuki, K. Yamamoto, 2001, Journal of theoretical biology.

Mean free energy topology for nucleotide sequences of varying composition based on secondary structure calculations.

W. Dawson, K. Yamamoto, 1999, Journal of theoretical biology.

A new entropy model for RNA: part V, Incorporating the Flory-Huggins model in structure prediction and folding

W. Dawson, G. Kawai, 2015 .

Modeling of ribonucleic acid–ligand interactions

Ewa I. Chudyk, M. Bodkin, J. Bujnicki, 2015 .

SupeRNAlign: a new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments

J. Bujnicki, Tomasz Walen, W. Dawson, 2017, Nucleic acids research.

One protein to rule them all: The role of CCCTC-binding factor in shaping human genome in health and disease.

Dariusz Plewczynski, Michal Lazniewski, Dariusz M Plewczynski, 2019, Seminars in cell & developmental biology.

Monitoring the Transcription and Transport Process of RNA Using Optical Imaging Techniques: A Brief Review

W. Dawson, Kenji Yamamoto, 2000 .

The structural variability of the influenza A hemagglutinin receptor-binding site

Dariusz M Plewczynski, W. Dawson, D. Plewczyński, 2017, Briefings in functional genomics.

Modeling of Protein-RNA Complex Structures Using Computational Docking Methods.

Joanna M. Kasprzak, J. Bujnicki, I. Tuszynska, 2016, Methods in molecular biology.

Electron Transport in a Dioxygenase-Ferredoxin Complex: Long Range Charge Coupling between the Rieske and Non-Heme Iron Center

W. Dawson, T. Terada, K. Shimizu, 2016, PloS one.

A method for finding optimal RNA secondary structures using a new entropy model (vsfold)

W. Dawson, G. Kawai, Kazuya Fujiwara, 2006, Nucleosides, nucleotides & nucleic acids.

A physical origin for functional domain structure in nucleic acids as evidenced by cross-linking entropy: II.

W. Dawson, K. Suzuki, K. Yamamoto, 2001, Journal of theoretical biology.

A new entropy model for RNA : part II , persistence-related entropic contributions to RNA secondary structure free energy calculation Appendix : Renormalization theory as used in this work

W. Dawson, K. Shimizu, Gota Kawai, 2014 .

Modeling the Chain Entropy of Biopolymers: Unifying Two Different Random Walk Models under One Framework

W. Dawson, G. Kawai, 2009 .

A new entropy model for RNA: part III. Is the folding free energy landscape of RNA funnel shaped?

W. Dawson, K. Shimizu, G. Kawai, 2014 .

Home Educating in an Extended Family Culture and Aging Society May Fare Best during a Pandemic

W. Dawson, Kenji Yamamoto, 2009, PloS one.

RNA structure interactions and ribonucleoprotein processes of the influenza A virus

Dariusz M Plewczynski, W. Dawson, D. Plewczyński, 2017, Briefings in functional genomics.

NPDock: a web server for protein–nucleic acid docking

Janusz M. Bujnicki, Irina Tuszynska, Katarzyna Jonak, 2015, Nucleic Acids Res..

Computational modeling of RNA 3D structures, with the aid of experimental restraints

Janusz M Bujnicki, Marcin Magnus, Wayne Dawson, 2014, RNA biology.

Developing an Updated Strategy for Estimating the Free-Energy Parameters in RNA Duplexes

W. Dawson, Gota Kawai, Amiu Shino, 2021, International journal of molecular sciences.

Drug repurposing for identification of potential spike inhibitors for SARS-CoV-2 using molecular docking and molecular dynamics simulations

W. Dawson, D. Plewczyński, M. Lazniewski, 2022, Methods.

A new entropy model for RNA: part II. Persistence-related entropic contributions to RNA secondary structure free energy calculations

Kentaro Shimizu, Gota Kawai, Kenji Yamamoto, 2013 .

A new entropy model for RNA: part I. A critique of the standard Jacobson-Stockmayer model applied to multiple cross links

W. Dawson, G. Kawai, Kenji Yamamoto, 2012 .

Free energy-based model of CTCF-mediated chromatin looping in the human genome.

Dariusz Plewczynski, Michal Lazniewski, Wayne Dawson, 2020, Methods.

Chromatin: A Semi-Structured Polymer

Dariusz Plewczynski, Michal Lazniewski, Wayne Dawson, 2019, Encyclopedia of Bioinformatics and Computational Biology.

SimRNAweb: a web server for RNA 3D structure modeling with optional restraints

Janusz M. Bujnicki, Michal Boniecki, Marcin Magnus, 2016, Nucleic Acids Res..

Free energy based high-resolution modeling of CTCF-mediated chromatin loops for human genome

Dariusz Plewczynski, Wayne Dawson, W. Dawson, 2017, bioRxiv.

Computational modeling of RNA 3D structures and interactions.

Janusz M Bujnicki, J. Bujnicki, W. Dawson, 2016, Current opinion in structural biology.

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

Katarzyna J Purzycka, K. Weeks, Zhichao Miao, 2017, RNA.