Yaoyun Zhang

发表

Time-sensitive clinical concept embeddings learned from large electronic health records

Yang Xiang, Cui Tao, Zhiheng Li, 2019, BMC Medical Informatics and Decision Making.

Chemical named entity recognition in patents by domain knowledge and unsupervised feature learning

Hui Chen, Yaoyun Zhang, Jun Xu, 2016, Database J. Biol. Databases Curation.

UTHealth at SemEval-2016 Task 12: an End-to-End System for Temporal Information Extraction from Clinical Notes

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2016, *SEMEVAL.

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study

Hua Xu, Yang Xiang, L. Rasmy, 2019, Journal of medical Internet research.

Comorbidity in Adult Patients Hospitalized with Type 2 Diabetes in Northeast China: An Analysis of Hospital Discharge Data from 2002 to 2013

Yonghui Wu, Hua Xu, Yaoyun Zhang, 2016, BioMed research international.

A pilot study of mining association between psychiatric stressors and symptoms in tweets

Jingcheng Du, Cui Tao, Yaoyun Zhang, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Psychiatric symptom recognition without labeled data using distributional representations of phrases and on-line knowledge.

Olivia R. Zhang, Yonghui Wu, Kirk Roberts, 2017, Journal of biomedical informatics.

22nd International Conference on Computational Linguistics Proceedings of the workshop on Knowledge and Reasoning for Answering Questions

Valeria C V de Paiva, P. Saint-Dizier, Xuan Wang, 2008 .

Exploring temporal suicidal behavior patterns on social media: Insight from Twitter analytics

Hua Xu, Yaoyun Zhang, Cui Tao, 2019, Health Informatics J..

COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model

Huy Anh Pham, Masoud Rouhizadeh, Yaoyun Zhang, 2020, J. Am. Medical Informatics Assoc..

Guideline-driven data quality assessment- A case study of warfarin management

Yaoyun Zhang, Chunhua Weng, Hua Xu, 2018, AMIA.

Evaluating Word Embeddings from Multiple Domains for Symptom Recognition in Psychiatric Notes

Yaoyun Zhang, Hua Xu, Yonghui Wu, 2017, AMIA.

Understanding Consumers' Information Needs about Breast Cancer by Analyzing Online Questions

Yaoyun Zhang, Hua Xu, Hua Xu, 2013, AMIA.

Identifying Disease Hierarchical Relation with Concept Embeddings and Distant Supervision

Yaoyun Zhang, Hua Xu, Lingyi Tang, 2017, AMIA.

Detecting Contradictory and Consistent Citations in Biomedical Literature

Yaoyun Zhang, Jun Xu, Hua Xu, 2017, AMIA.

A Preliminary Study of Coupling Transfer Learning with Active Learning for Clinical Named Entity Recognition between Two Institutions

Yaoyun Zhang, Hua Xu, Joshua C. Denny, 2014, AMIA.

Toward a normalized clinical drug knowledge base in China—applying the RxNorm model to Chinese clinical drugs

Cui Tao, Li Wang, Yi Zhou, 2018, J. Am. Medical Informatics Assoc..

Detecting Body Location Modifiers of Disorders in Clinical Texts via Sequence Labeling

Yaoyun Zhang, Jun Xu, Hua Xu, 2017, AMIA.

What Can Neural Networks Learn from Unlabeled Clinical Narratives?

Yaoyun Zhang, Jun Xu, Hua Xu, 2016, AMIA.

GWAS Finder: Search Engine for GWAS Datasets in Biomedical Literature

Yaoyun Zhang, Hua Xu, Xiao Dong, 2016, AMIA.

Asthma Exacerbation Prediction and Interpretation based on Time-sensitive Attentive Neural Network: A Retrospective Cohort Study

Hua Xu, Yang Xiang, Yujia Zhou, 2019 .

Extracting comprehensive clinical information for breast cancer using deep learning methods

Qin Zhang, Yaoyun Zhang, Xiaohui Zhang, 2019, Int. J. Medical Informatics.

Extracting entities with attributes in clinical text via joint deep learning

Yaoyun Zhang, Qingcai Chen, Buzhou Tang, 2019, J. Am. Medical Informatics Assoc..

Predicting post-stroke pneumonia using deep neural network approaches

Chen Peng, Yuan Xu, Yanqiu Ge, 2019, Int. J. Medical Informatics.

CD-REST: a system for extracting chemical-induced disease relation in literature

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2016, Database J. Biol. Databases Curation.

Psychiatric stressor recognition from clinical notes to reveal association with suicide

Yaoyun Zhang, Rui Li, Hua Xu, 2018, Health Informatics J..

Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes

Yaoyun Zhang, Jingqi Wang, Hua Xu, 2018, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Interweaving Domain Knowledge and Unsupervised Learning for Psychiatric Stressor Extraction from Clinical Notes

Yaoyun Zhang, Jun Xu, Hua Xu, 2017, IEA/AIE.

Identifying direct temporal relations between time and events from clinical notes

Cui Tao, Yaoyun Zhang, Jun Xu, 2018, BMC Medical Informatics and Decision Making.

UTH_CCB: A report for SemEval 2014 – Task 7 Analysis of Clinical Text

Yaoyun Zhang, Jingqi Wang, Hua Xu, 2014, *SEMEVAL.

Domain Adaptation for Semantic Role Labeling of Clinical Text

Yaoyun Zhang, Jingqi Wang, Hua Xu, 2015, AMIA.

Leveraging syntactic and semantic graph kernels to extract pharmacokinetic drug drug interactions from biomedical literature

Yaoyun Zhang, Heng-Yi Wu, Jun Xu, 2016, BMC Systems Biology.

COVID-19 SignSym: a fast adaptation of a general clinical NLP tool to identify and normalize COVID-19 signs and symptoms to OMOP common data model

Yaoyun Zhang, Masoud Rouhizadeh, Huy Anh Pham, 2021, J. Am. Medical Informatics Assoc..

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study (Preprint)

Yang Xiang, L. Rasmy, Yujia Zhou, 2019 .

Problematic Situation Analysis and Automatic Recognition for Chinese Online Conversational System

Yang Xiang, Xiaolong Wang, Yaoyun Zhang, 2014, CIPS-SIGHAN.

A Hybrid Model For Grammatical Error Correction

Yang Xiang, Xiaolong Wang, Yaoyun Zhang, 2013, CoNLL Shared Task.

Semantic Role Labeling of Clinical Text: Comparing Syntactic Parsers and Features

Yaoyun Zhang, Jingqi Wang, Hua Xu, 2016, AMIA.

HITSZ-ICRC: Exploiting Classification Approach for Answer Selection in Community Question Answering

Xiaolong Wang, Yaoyun Zhang, Jun Xu, 2015, *SEMEVAL.

Integrating Multiple On-line Knowledge Bases for Disease-Lab Test Relation Extraction

Yaoyun Zhang, Jingqi Wang, Ergin Soysal, 2015, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Expressing Biomedical Ontologies in Natural Language for Expert Evaluation

Cui Tao, Yaoyun Zhang, Hua Xu, 2019, MedInfo.

Opioid2FHIR: A system for extracting FHIR-compatible opioid prescriptions from clinical text

Yaoyun Zhang, Hua Xu, Jingqi Wang, 2020, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Extracting psychiatric stressors for suicide from social media using deep learning

Jingcheng Du, Cui Tao, Yaoyun Zhang, 2018, BMC Medical Informatics and Decision Making.

Citation Sentiment Analysis in Clinical Trial Papers

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2015, AMIA.

Lightweight predicate extraction for patient-level cancer information and ontology development

Cui Tao, Yaoyun Zhang, Hua Xu, 2017, BMC Medical Informatics and Decision Making.

Comparing Cancer Information Needs for Consumers in the US and China

Yaoyun Zhang, Jun Xu, Hua Xu, 2017, MedInfo.

A study of deep learning approaches for medication and adverse drug event extraction from clinical text

Jingcheng Du, Yang Xiang, Cui Tao, 2019, J. Am. Medical Informatics Assoc..

Knowledge-Based Approach for Named Entity Recognition in Biomedical Literature: A Use Case in Biomedical Software Identification

Cui Tao, Yaoyun Zhang, Hua Xu, 2017, IEA/AIE.

Recognizing software names in biomedical literature using machine learning

Yaoyun Zhang, Qiang Wei, Hua Xu, 2019, Health Informatics J..

An Extended Overview of the CLEF 2020 ChEMU Lab: Information Extraction of Chemical Reactions from Patents

Yaoyun Zhang, Patrick Ruch, Daniel M. Lowe, 2020, CLEF.

Recognizing Disjoint Clinical Concepts in Clinical Text Using Machine Learning-based Methods

Xiaolong Wang, Yaoyun Zhang, Jingqi Wang, 2015, AMIA.

Evaluation of Vector Space Models for Medical Disorders Information Retrieval

Yaoyun Zhang, Hua Xu, Trevor Cohen, 2013, CLEF.

Clinical Abbreviation Disambiguation Using Neural Word Embeddings

Yaoyun Zhang, Jun Xu, Hua Xu, 2015, BioNLP@IJCNLP.

Extraction of BI-RADS findings from breast ultrasound reports in Chinese using deep learning approaches

Xin Zhang, Li Wang, Yaoyun Zhang, 2018, Int. J. Medical Informatics.

Using question classification to model user intentions of different levels

Xiaolong Wang, Xuan Wang, Yaoyun Zhang, 2009, 2009 IEEE International Conference on Systems, Man and Cybernetics.

Leveraging existing corpora for de-identification of psychiatric notes using domain adaptation

Yaoyun Zhang, Hua Xu, Kirk Roberts, 2017, AMIA.

A hybrid approach to automatic de-identification of psychiatric notes.

Yaoyun Zhang, Hua Xu, Yonghui Wu, 2017, Journal of biomedical informatics.

Melaxtech: A report for CLEF 2020 - ChEMU Task of Chemical Reaction Extraction from Patent

Zhi Zhang, Yaoyun Zhang, Jingqi Wang, 2020, CLEF.

Extracting genetic alteration information for personalized cancer therapy from ClinicalTrials.gov

Yaoyun Zhang, Hua Xu, Trevor Cohen, 2016, J. Am. Medical Informatics Assoc..

Precision medicine for breast cancer: extracting rich genetic and phenotypic information from Chinese clinical narratives

Yaoyun Zhang, Qin Zhang, Yuankai Ren, 2019, American Medical Informatics Association Annual Symposium.

CLAMP-PA: A machine learning based pre-annotation pipeline for corpus construction of clinical concepts

Yaoyun Zhang, Jingqi Wang, Hua Xu, 2018, American Medical Informatics Association Annual Symposium.

CLAMP-ATR: A deep learning pipeline for attribute recognition of clinical concepts

Yaoyun Zhang, Hua Xu, Jingqi Wang, 2019, American Medical Informatics Association Annual Symposium.

Detecting Anatomical Entities in Clinical Text

Jingcheng Du, Yaoyun Zhang, Jingqi Wang, 2018, American Medical Informatics Association Annual Symposium.

Building a Biomedical Bilingual Parallel Corpus between Chinese and English from PubMed

Yaoyun Zhang, Hua Xu, Lingyi Tang, 2018, American Medical Informatics Association Annual Symposium.

Applying a deep learning-based sequence labeling approach to detect attributes of medical concepts in clinical text

Yang Xiang, Zhiheng Li, Yaoyun Zhang, 2019, BMC Medical Informatics and Decision Making.

A Study of Neural Word Embeddings for Named Entity Recognition in Clinical Text

Yaoyun Zhang, Jun Xu, Hua Xu, 2015, AMIA.

UTH-CCB: The Participation of the SemEval 2015 Challenge – Task 14

Yaoyun Zhang, Jun Xu, Jingqi Wang, 2015, *SEMEVAL.

A comparison of conditional random fields and structured support vector machines for chemical entity recognition in biomedical literature

Xiaolong Wang, Yaoyun Zhang, Jingqi Wang, 2015, Journal of Cheminformatics.

Distant Supervision for Relation Extraction via Group Selection

Yang Xiang, Xiaolong Wang, Yaoyun Zhang, 2015, ICONIP.

Adapting Word Embeddings from Multiple Domains to Symptom Recognition from Psychiatric Notes

Kirk Roberts, Yaoyun Zhang, Jingqi Wang, 2018, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

IDPpub: Illuminating the Dark Phosphoproteome Through PubMed Mining

Sara R. Savage, Huy Anh Pham, Yuxing Liao, 2023, Molecular & cellular proteomics : MCP.

Extracting drug-enzyme relation from literature as evidence for drug drug interaction

Lang Li, Jun Xu, Yaoyun Zhang, 2016, J. Biomed. Semant..