Cui Tao

Rachel Cunningham, Muhammad Amith, Yang Gong, 2020, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

ML-Net: multi-label classification of biomedical texts with deep neural networks

Zhiyong Lu, Yifan Peng, Qingyu Chen, 2018, J. Am. Medical Informatics Assoc..

Gene2vec: distributed representation of genes based on co-expression

Zhongming Zhao, P. Jia, Cui Tao, 2018, bioRxiv.

Developing an ontology for representing the domain knowledge specific to non‐pharmacological treatment for agitation in dementia

Sim Kim Lau, Ping Yu, Zhenyu Zhang, 2020, Alzheimer's & dementia.

Identification of sex-associated network patterns in Vaccine-Adverse Event Association Network in VAERS

Cui Tao, Yuji Zhang, Puqiang Wu, 2015, J. Biomed. Semant..

Linked vaccine adverse event data from VAERS for biomedical data analysis and longitudinal studies

Cui Tao, Yi Luo, Yuji Zhang, 2014, BioData Mining.

Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network

Asha A. Nair, C. Chute, Hongfang Liu, 2014, J. Biomed. Semant..

Correction to “Network Analysis of Cancer-focused Association Network Reveals Distinct Network Association Patterns”

Cui Tao, Yuji Zhang, 2014, Cancer informatics.

Med-BERT: pretrained contextualized embeddings on large-scale structured electronic health records for disease prediction pdf

Ziqian Xie, Cui Tao, Degui Zhi, 2020, npj Digital Medicine.

Temporal data representation, normalization, extraction, and reasoning: A review from clinical domain

Cui Tao, Driss Benhaddou, Mohcine Madkour, 2016, Comput. Methods Programs Biomed..

Colorectal cancer drug target prediction using ontology-based inference and network analysis

Cui Tao, Junjie Chen, Hua Xu, 2015, Database J. Biol. Databases Curation.

Extracting postmarketing adverse events from safety reports in the vaccine adverse event reporting system (VAERS) using deep learning

Meng Zhang, Jingcheng Du, Hua Xu, 2021, J. Am. Medical Informatics Assoc..

Application of artificial intelligence and machine learning for HIV prevention interventions.

K. Fujimoto, Fang Li, Cui Tao, 2021, The lancet. HIV.

Identifying influential neighbors in social networks and venue affiliations among young MSM: A data science approach to predict HIV infection.

K. Fujimoto, Yang Xiang, Fang Li, 2020, AIDS.

Development and Evaluation of ADCareOnto - an Ontology for Personalized Home Care for Persons with Alzheimer's Disease

Cui Tao, Xin Wang, Bo Xie, 2021, 2020 IEEE International Conference on E-health Networking, Application & Services (HEALTHCOM).

Systematic Design and Evaluation of Social Determinants of Health Ontology (SDoHO)

V. Keloth, Fang Li, Cui Tao, 2022, J. Am. Medical Informatics Assoc..

Leveraging machine learning-based approaches to assess human papillomavirus vaccination sentiment trends with Twitter data

Jingcheng Du, Cui Tao, Jun Xu, 2017, BMC Medical Informatics and Decision Making.

Mining Twitter to Assess the Determinants of Health Behavior towards Human Papillomavirus Vaccination in the United States

Rui Zhang, Jiang Bian, Adam G. Dunn, 2019, J. Am. Medical Informatics Assoc..

A representational analysis of a temporal indeterminancy display in clinical events

Jingcheng Du, Cui Tao, Hsing-yi Song, 2016, 2016 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Identifying direct temporal relations between time and events from clinical notes

Cui Tao, Yaoyun Zhang, Jun Xu, 2018, BMC Medical Informatics and Decision Making.

A semantic relationship mining method among disorders, genes, and drugs from different biomedical datasets

Li Zhang, Fang Li, Cui Tao, 2020, BMC Medical Informatics and Decision Making.

A Multi-Source Linked Open Data Fusion Method for Gene Disorder Drug Relationship Querying

Li Zhang, Xiaowang Zhang, Guozheng Rao, 2019, SEPDA@ISWC.

Towards improving diagnosis of skin diseases by combining deep neural network and human knowledge

Cui Tao, Xinyuan Zhang, Jie Liu, 2018, BMC Medical Informatics and Decision Making.

An Interactive Game for Changing Youth Behavior Regarding E-cigarettes

Jianfu Li, Muhammad Amith, Cui Tao, 2020, HCI.

Leveraging deep learning to understand health beliefs about the Human Papillomavirus Vaccine from social media

Jingcheng Du, Jiang Bian, Yuxi Jia, 2019, npj Digital Medicine.

Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies

Yang Xiang, Hua Xu, Degui Zhi, 2020, J. Am. Medical Informatics Assoc..

Asthma Exacerbation Prediction and Risk Factor Analysis Based on a Time-Sensitive, Attentive Neural Network: Retrospective Cohort Study (Preprint)

Yang Xiang, L. Rasmy, Yujia Zhou, 2019 .

Deep learning-based, computer-aided classifier developed with dermoscopic images shows comparable performance to 164 dermatologists in cutaneous disease diagnosis in the Chinese population

Cui Tao, Jie Liu, Shiqi Wang, 2020, Chinese medical journal.

Visualized Emotion Ontology: a model for representing visual cues of emotions

Cui Tao, Rui Duan, Yong Chen, 2018, BMC Medical Informatics and Decision Making.

Conceiving an application ontology to model patient human papillomavirus vaccine counseling for dialogue management

Kirk Roberts, Muhammad Amith, Cui Tao, 2019, BMC Bioinformatics.

Using Pathfinder networks to discover alignment between expert and consumer conceptual knowledge from online vaccine content

Cui Tao, Trevor Cohen, Roger W. Schvaneveldt, 2017, J. Biomed. Informatics.

Relation Extraction from Clinical Narratives Using Pre-trained Language Models

Jingcheng Du, Kirk Roberts, Hua Xu, 2019, AMIA.

Early Usability Assessment of a Conversational Agent for HPV Vaccination

Cui Tao, Kirk Roberts, Yong Chen, 2019, ITCH.

An Ontology-Powered Dialogue Engine For Patient Communication of Vaccines

Licong Cui, Kirk Roberts, Hua Xu, 2019, SEPDA@ISWC.

Medical Image Retrieval: A Multimodal Approach

Degui Xiao, Cui Tao, Henning Müller, 2014, Cancer informatics.

Nonselective beta‐blockers are associated with a lower risk of hepatocellular carcinoma among cirrhotic patients in the United States

Huy Anh Pham, Yang Xiang, Yujia Zhou, 2021, Alimentary pharmacology & therapeutics.

“Down the Rabbit Hole” of Vaccine Misinformation on YouTube: Network Exposure Study

K. Fujimoto, Cui Tao, Rachel Cunningham, 2021, Journal of medical Internet research.

Oncogenes and tumor suppressor genes: comparative genomics and network perspectives

Zhongming Zhao, Jingchun Sun, Qi Liu, 2015, BMC Genomics.

Using Machine Learning–Based Approaches for the Detection and Classification of Human Papillomavirus Vaccine Misinformation: Infodemiology Study of Reddit Discussions

R. Shegog, Cui Tao, L. Savas, 2021, Journal of medical Internet research.

Assessing the practice of biomedical ontology evaluation: Gaps and opportunities

Cui Tao, Muhammad Amith, Juan Antonio Lossio-Ventura, 2018, J. Biomed. Informatics.

Integrating Multiple On-line Knowledge Bases for Disease-Lab Test Relation Extraction

Yaoyun Zhang, Jingqi Wang, Ergin Soysal, 2015, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Expressing Biomedical Ontologies in Natural Language for Expert Evaluation

Cui Tao, Yaoyun Zhang, Hua Xu, 2019, MedInfo.

Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets

Jun Xu, Cui Tao, Jingcheng Du, 2017, J. Biomed. Semant..

Exploring difference in public perceptions on HPV vaccine between gender groups from Twitter using deep learning pdf

Jingcheng Du, Cui Tao, Yong Chen, 2019, ArXiv.

Public Perception Analysis of Tweets During the 2015 Measles Outbreak: Comparative Study Using Convolutional Neural Network Models

Jingcheng Du, Yang Xiang, Cui Tao, 2018, Journal of medical Internet research.

Extracting psychiatric stressors for suicide from social media using deep learning

Jingcheng Du, Cui Tao, Yaoyun Zhang, 2018, BMC Medical Informatics and Decision Making.

An NLP approach to identify SDoH-related circumstance and suicide crisis from death investigation narratives

J. Pathak, Yifan Peng, Cui Tao, 2023, J. Am. Medical Informatics Assoc..

Representing vaccine misinformation using ontologies

Cui Tao, M. Amith, 2018, Journal of Biomedical Semantics.

Lightweight predicate extraction for patient-level cancer information and ontology development

Cui Tao, Yaoyun Zhang, Hua Xu, 2017, BMC Medical Informatics and Decision Making.

Developing VISO: Vaccine Information Statement Ontology for patient education

Cui Tao, Yang Gong, Rachel Cunningham, 2015, J. Biomed. Semant..

Modulated evaluation metrics for drug-based ontologies

Cui Tao, M. Amith, 2017, J. Biomed. Semant..

A Web Application Towards Semiotic-based Evaluation of Biomedical Ontologies

Cui Tao, Muhammad Amith, Cui Tao, 2015, BDM2I@ISWC.

Friend of a Friend with Benefits ontology (FOAF+): extending a social network ontology for public health

Muhammad Amith, Rebecca L. Mauldin, Cui Tao, 2020, BMC Medical Informatics and Decision Making.

Associations of Antihypertensive Medication Consumption and Drug-Drug Interaction with Statin and Metformin with Reduced Alzheimer's Disease and Related Dementias Risk among Hypertensive Patients with Mild Cognitive Impairment using High Volume Claims Data

Cui Tao, Yong Chen, Xinyue Hu, 2023, Research square.

Normalization and standardization of electronic health records for high-throughput phenotyping: the SHARPn consortium.

Cui Tao, Christopher G Chute, Timothy Miller, 2013, Journal of the American Medical Informatics Association : JAMIA.

Social Determinants, Cardiovascular Disease, and Health Care Cost: A Nationwide Study in the United States Using Machine Learning.

L. Hou, Cui Tao, Qi Dai, 2023, Journal of the American Heart Association.

COVID-19 trial graph: a linked graph for COVID-19 clinical trials

Yang Xiang, Xiaoqian Jiang, Cui Tao, 2021, J. Am. Medical Informatics Assoc..

Mining on Alzheimer’s diseases related knowledge graph to identity potential AD-related semantic triples for drug repurposing

Fang Li, Cui Tao, Jingcheng Du, 2022, BMC Bioinformatics.

Semantics-Powered Healthcare Engineering and Data Analytics

Cui Tao, Michel Dumontier, Jiang Bian, 2017, Journal of healthcare engineering.

Selected articles from the Fourth International Workshop on Semantics-Powered Data Mining and Analytics (SEPDA 2019)

Rui Zhang, Jiang Bian, Zhe He, 2020, BMC Medical Informatics and Decision Making.

Selected articles from the Third International Workshop on Semantics-Powered Data Analytics (SEPDA 2018)

Rui Zhang, Jiang Bian, Zhe He, 2019, BMC Medical Informatics and Decision Making.

Introduction: selected extended articles from the 2nd International Workshop on Semantics-Powered Data Analytics (SEPDA 2017)

Cui Tao, Jiang Bian, Rui Zhang, 2018, BMC Medical Informatics and Decision Making.

Gene fingerprint model for literature based detection of the associations among complex diseases: a case study of COPD

Cui Tao, Ping Li, Guocai Chen, 2019, BMC Medical Informatics and Decision Making.

A 2013 workshop: vaccine and drug ontology studies (VDOS 2013)

Y. He, Cui Tao, Sivaram Arabandi, 2014, J. Biomed. Semant..

A health consumer ontology of fast food information

Kirk Roberts, Cui Tao, Muhammad Amith, 2020, 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

A study of deep learning approaches for medication and adverse drug event extraction from clinical text

Jingcheng Du, Yang Xiang, Cui Tao, 2019, J. Am. Medical Informatics Assoc..

Computer-aided diagnosis of four common cutaneous diseases using deep learning algorithm

Cui Tao, Xinyuan Zhang, Jie Liu, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

iDISK: the integrated DIetary Supplements Knowledge base

Rui Zhang, Jiang Bian, Rubina F. Rizvi, 2020, J. Am. Medical Informatics Assoc..

Comparing the Human Papillomavirus Vaccination Opinions Trends from Different Twitter User Groups with a Machine Learning Based System and Semiparametric Nonlinear Regression

Jing Huang, Jingcheng Du, Cui Tao, 2017, MedInfo.

Knowledge-Based Approach for Named Entity Recognition in Biomedical Literature: A Use Case in Biomedical Software Identification

Cui Tao, Yaoyun Zhang, Hua Xu, 2017, IEA/AIE.

Recognizing software names in biomedical literature using machine learning

Yaoyun Zhang, Qiang Wei, Hua Xu, 2019, Health Informatics J..

Systematic Design and Evaluation of Drug Repurposing-Oriented Alzheimer’s Disease Ontology (Preprint)

Huy Anh Pham, Yang Xiang, Fang Li, 2020 .

Post-marketing Drug Safety Evaluation Using Data Mining Based on FAERS

R. Duan, Jing Huang, Yong Chen, 2017, DMBD.

Alexa, What Should I Eat? : A Personalized Virtual Nutrition Coach for Native American Diabetes Patients Using Amazon’s Smart Speaker Technology

Juan Li, Jun Kong, Cui Tao, 2019, 2019 IEEE International Conference on E-health Networking, Application & Services (HealthCom).

GSO: A Semantic Web Ontology to Capture 3D Genome Structure

Jingcheng Du, Cui Tao, W. Jim Zheng, 2014, SWAT4LS.

“Down the Rabbit Hole” of Vaccine Misinformation on YouTube: Network Exposure Study

K. Fujimoto, Cui Tao, Rachel Cunningham, 2021, Journal of medical Internet research.

X-A-BiLSTM: a Deep Learning Approach for Depression Detection in Imbalanced Data

Yang Xiang, Cui Tao, Zhiyong Feng, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Constructing Biomedical Knowledge Graph Based on SemMedDB and Linked Open Data

Cui Tao, Li Zhang, Zhiyong Feng, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events

Jingcheng Du, Yang Xiang, Yongqun He, 2020, J. Am. Medical Informatics Assoc..

Identifying Clinical Risk Factors for Opioid Use Disorder using a Distributed Algorithm to Combine Real-World Data from a Large Clinical Data Research Network

R. Duan, J. Tong, Y. Chen, 2020, medRxiv.

Knowledge Graph-based Neurodegenerative Diseases and Diet Relationship Discovery pdf

Yi Nian, Cui Tao, Jingcheng Du, 2021, ArXiv.

Network Analysis of Cancer-focused Association Network Reveals Distinct Network Association Patterns

Cui Tao, Yuji Zhang, 2014, Cancer informatics.

Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology

Hongfang Liu, Y. He, Cui Tao, 2013, Journal of Biomedical Semantics.

Correlating Lab Test Results in Clinical Notes with Structured Lab Data: A Case Study in HbA1c and Glucose

Donna M. Ihrke, Hongfang Liu, C. Weng, 2017, CRI.

Comparing drug safety of hepatitis C therapies using post-market data

Jingcheng Du, Cui Tao, Jason H. Moore, 2019, BMC Medical Informatics and Decision Making.

Optimization on machine learning based approaches for sentiment analysis on HPV vaccines related tweets

Jingcheng Du, Cui Tao, Xiangyu Liu, 2017, Journal of Biomedical Semantics.

Architecture and usability of OntoKeeper, an ontology evaluation tool

Cui Tao, Yongqun He, Marcelline Harris, 2019, BMC Medical Informatics and Decision Making.

Designing Ontology-based Patterns for the Representation of the Time-Relevant Eligibility Criteria of Clinical Protocols

Cui Tao, Christopher L. Crowe, Cui Tao, 2015, AMIA Joint Summits on Translational Science proceedings. AMIA Joint Summits on Translational Science.

Gene2vec: distributed representation of genes based on co-expression

Jingcheng Du, Peilin Jia, Zhongming Zhao, 2018, BMC Genomics.

Semantic based model of Conceptual Work Products for formal verification of complex interactive systems pdf

Cui Tao, Eric Mercer, Keith Butler, 2020, ArXiv.

Trivalent influenza vaccine adverse symptoms analysis based on MedDRA terminology using VAERS data in 2011

Y. Cai, Cui Tao, Jingcheng Du, 2016, J. Biomed. Semant..

Designing an ontology for emotion-driven visual representations

Cui Tao, Chen Liang, Rebecca Lin, 2017, 2017 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

An integrative computational approach to identify disease-specific networks from PubMed literature information

Cui Tao, Hongfang Liu, Dingcheng Li, 2013, 2013 IEEE International Conference on Bioinformatics and Biomedicine.

Identification of sex-associated network patterns in Vaccine-Adverse Event Association Network in VAERS

Cui Tao, Yi Luo, Yuji Zhang, 2015, Journal of Biomedical Semantics.

Network-based analysis reveals distinct association patterns in a semantic MEDLINE-based drug-disease-gene network

Jian Su, Cui Tao, Hongfang Liu, 2014, Journal of Biomedical Semantics.

Linked Vaccine Adverse Event Data Representation from VAERS for Biomedical Informatics Research

Cui Tao, Yuji Zhang, Puqiang Wu, 2014, PAKDD Workshops.

Comparing adverse effects of Hepatitis C drugs using FAERS data

Jingcheng Du, Cui Tao, Rui Duan, 2018, 2018 IEEE International Conference on Bioinformatics and Biomedicine (BIBM).

Prediction of post‐vaccination Guillain‐Barré syndrome using data from a passive surveillance system

S. Ellenberg, Jing Huang, Cui Tao, 2021, Pharmacoepidemiology and drug safety.

A 2013 workshop: vaccine and drug ontology studies (VDOS 2013)

Cui Tao, Yongqun He, Sivaram Arabandi, 2014, Journal of Biomedical Semantics.

Extracting drug-enzyme relation from literature as evidence for drug drug interaction

Lang Li, Jun Xu, Yaoyun Zhang, 2016, J. Biomed. Semant..

Network-based analysis of vaccine-related associations reveals consistent knowledge with the vaccine ontology

Cui Tao, Hongfang Liu, Yongqun He, 2013, Journal of Biomedical Semantics.

Text Mining and Machine Learning for Precision Medicine

Jaclyn N. Taroni, R. L. Nielsen, Hongfang Liu, 2018, PSB.