C. Ané

发表

Prospects for Building the Tree of Life from Large Sequence Databases

J. G. Burleigh, M. Sanderson, A. Driskell, 2004, Science.

Detecting and locating whole genome duplications on a phylogeny: a probabilistic approach.

Charles-Elie Rabier, Cécile Ané, C. Ané, 2014, Molecular biology and evolution.

A linear-time algorithm for Gaussian and non-Gaussian trait evolution models.

C. Ané, L. Ho, 2014, Systematic biology.

Rphylopars: fast multivariate phylogenetic comparative methods for missing data and within‐species variation

J. Bruggeman, C. Ané, Eric W. Goolsby, 2017 .

Comparing two Bayesian methods for gene tree/species tree reconstruction: simulations with incomplete lineage sorting and horizontal gene transfer.

C. Ané, Yujin Chung, 2011, Systematic biology.

Bayesian estimation of concordance among gene trees.

B. Larget, A. Rokas, C. Ané, 2006, Molecular biology and evolution.

Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data

J. Gordon Burleigh, J. G. Burleigh, Cécile Ané, 2016, Genome biology and evolution.

Identifiability of a Markovian model of molecular evolution with gamma-distributed rates

Elizabeth S. Allman, John A. Rhodes, Cecile Ane, 2007, Advances in Applied Probability.

Exploring Tree-Like and Non-Tree-Like Patterns Using Genome Sequences: An Example Using the Inbreeding Plant Species Arabidopsis thaliana (L.) Heynh.

Bret Larget, Cécile Ané, B. Larget, 2015, Systematic biology.

PhyloNetworks: A Package for Phylogenetic Networks

Paul Bastide, Claudia R. Solís-Lemus, Claudia Solís-Lemus, 2017, Molecular biology and evolution.

Detecting Phylogenetic Breakpoints and Discordance from Genome-Wide Alignments for Species Tree Reconstruction

Cécile Ané, C. Ané, 2011, Genome biology and evolution.

TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD

Michael J. Sanderson, Brian C. O'Meara, Peter C. Wainwright, 2006, Evolution; international journal of organic evolution.

TESTING FOR DIFFERENT RATES OF CONTINUOUS TRAIT EVOLUTION USING LIKELIHOOD

M. Sanderson, C. Ané, B. O’Meara, 2006 .

Missing the forest for the trees: phylogenetic compression and its implications for inferring complex evolutionary histories.

Cécile Ané, M. Sanderson, C. Ané, 2005, Systematic biology.

Inconsistency of Species Tree Methods under Gene Flow.

Claudia R. Solís-Lemus, Mengyao Yang, Claudia Solís-Lemus, 2016, Systematic biology.

Inference of Adaptive Shifts for Multivariate Correlated Traits

Stéphane Robin, Paul Bastide, Mahendra Mariadassou, 2017, bioRxiv.

Computing the Joint Distribution of Tree Shape and Tree Distance for Gene Tree Inference and Recombination Detection

N. Perna, C. Ané, Yujin Chung, 2013, IEEE/ACM Transactions on Computational Biology and Bioinformatics.

Covarion structure in plastid genome evolution: a new statistical test.

J. G. Burleigh, J Gordon Burleigh, Cécile Ané, 2005, Molecular biology and evolution.

Gene tree reconciliation: new developments in Bayesian concordance analysis with BUCKy

Colin N. Dewey, Satish K. Kotha, B. Larget, 2010 .

Phylogenetic trees and networks can serve as powerful and complementary approaches for analysis of genomic data.

C. Ané, C. Blair, 2019, Systematic biology.

Statistical evidence for common ancestry: Application to primates

Lam Si Tung Ho, Claudia R. Solís-Lemus, Bret Larget, 2016, Evolution; international journal of organic evolution.

Inferring Phylogenetic Networks with Maximum Pseudolikelihood under Incomplete Lineage Sorting

Claudia R. Solís-Lemus, Claudia Solís-Lemus, Cécile Ané, 2015, PLoS genetics.

Phylogenetic comparative methods on phylogenetic networks with reticulations

Claudia R. Solís-Lemus, C. Ané, R. Kriebel, 2017, bioRxiv.

LOCATING EVOLUTIONARY PRECURSORS ON A PHYLOGENETIC TREE

M. Sanderson, M. Luckow, C. Ané, 2012, Evolution; international journal of organic evolution.

Identifiability of the Gtr+γ Model of Molecular Evolution

E. Allman, J. Rhodes, C. Ané, 2008 .

A Malvaceae mystery: A mallow maelstrom of genome multiplications and maybe misleading methods?

K. Wolff, C. Ané, J. Wendel, 2019, Journal of integrative plant biology.

Single copy nuclear gene analysis of polyploidy in wild potatoes (Solanum section Petota)

M. Bonierbale, L. Mueller, C. Ané, 2012, BMC Evolutionary Biology.

Macroevolutionary Tests of Pollination Syndromes: A Reply to Fenster et al.

C. Ané, D. Baum, Stacey D. Smith, 2009 .

Predicting growth-no growth of Staphylococcus aureus on vacuum-packaged ready-to-eat meats.

C. Ané, S. Ingham, D. Borneman, 2009, Journal of food protection.

A new carnivorous plant lineage (Triantha) with a unique sticky-inflorescence trap

S. Graham, C. Ané, T. Givnish, 2021, Proceedings of the National Academy of Sciences.

Comparison of bulk-tank standard plate count and somatic cell count for Wisconsin dairy farms in three size categories.

C. Ané, S. Ingham, Y. Hu, 2011, Journal of dairy science.

Dating with constraints

C. Ané, 2021 .

Phylogenomic resolution of order- and family-level monocot relationships using 602 single-copy nuclear genes and 1375 BUSCO genes

Saravanaraj N. Ayyampalayam, Jerrold I. Davis, N. Illing, 2022, Frontiers in Plant Science.

Phase transition on the convergence rate of parameter estimation under an Ornstein–Uhlenbeck diffusion on a tree

S. Roch, C. Ané, L. Ho, 2016, Journal of Mathematical Biology.

Phylogenetic Linear Regression

C. Ané, L. Ho, 2016 .

A Bayesian perspective on a non-parsimonious parsimony model.

J. Huelsenbeck, B. Larget, F. Ronquist, 2008, Systematic biology.

Fast and accurate detection of evolutionary shifts in Ornstein–Uhlenbeck models

Karl Rohe, Cécile Ané, Mohammad Khabbazian, 2016 .

RESPONSE OF LYMPHOCYTES

L. S. Cram, J. Jett, C. Ané, 1976 .

Using HSV-1 Genome Phylogenetics to Track Past Human Migrations

C. Ané, C. Brandt, A. Kolb, 2013, PloS one.

The iPlant Collaborative: Cyberinfrastructure for Plant Biology

B. S. Manjunath, Ali Akoglu, Lars Koesterke, 2011, Front. Plant Sci..

Monocot plastid phylogenomics, timeline, net rates of species diversification, the power of multi-gene analyses, and a functional model for the origin of monocots.

Jerrold I. Davis, M. Gandolfo, J. Leebens-Mack, 2018, American journal of botany.

Phase transition on the convergence rate of parameter estimation under an Ornstein–Uhlenbeck diffusion on a tree

Sébastien Roch, Lam Si Tung Ho, Cécile Ané, 2014, Journal of mathematical biology.

Intrinsic inference difficulties for trait evolution with Ornstein‐Uhlenbeck models

Lam Si Tung Ho, Cécile Ané, C. Ané, 2014 .

Fine-Scale Phylogenetic Discordance across the House Mouse Genome

Colin N. Dewey, B. Payseur, B. Larget, 2009, PLoS genetics.

BUCKy: Gene tree/species tree reconciliation with Bayesian concordance analysis

Colin N. Dewey, Cécile Ané, Bret R. Larget, 2010, Bioinform..

Statistical evidence for common ancestry: New tests of universal ancestry

B. Larget, C. Ané, D. Baum, 2016, bioRxiv.

Reticulate evolution helps explain apparent homoplasy in floral biology and pollination in baobabs (Adansonia; Bombacoideae; Malvaceae).

C. Ané, J. Wendel, D. Baum, 2020, Systematic biology.

Phylogenetic comparative methods on phylogenetic networks with reticulations

Claudia R. Solís-Lemus, C. Ané, R. Kriebel, 2017, bioRxiv.

Growth and survival parameter estimates and relation  to RpoS levels in serotype O157:H7 and non‐O157 Shiga  toxin‐producing Escherichia coli

C. Ané, D. Döpfer, T. D. Mand, 2013, Journal of applied microbiology.

Analysis of comparative data with hierarchical autocorrelation

Cécile Ané, C. Ané, 2008, 0804.3166.

Statistical Evidence for Common Ancestry: Testing for Signal in Silent Sites

B. Larget, C. Ané, D. Baum, 2016, bioRxiv.

Do potatoes and tomatoes have a single evolutionary history, and what proportion of the genome supports this history?

S. Tanksley, C. Ané, D. Spooner, 2009, BMC Evolutionary Biology.

Mapping Quantitative Trait Loci onto a Phylogenetic Tree

K. Broman, B. Payseur, Ś. Sen, 2012, Genetics.

Mapping Quantitative Trait Loci onto

K. Broman, B. Payseur, Ś. Sen, 2012 .

THE EVOLUTION OF HYBRID INCOMPATIBILITIES ALONG A PHYLOGENY

B. Payseur, C. Ané, Richard J. Wang, 2013, Evolution; international journal of organic evolution.

Assessing the fit of the multi-species network coalescent to multi-locus data

Ruoyi Cai, Cécile Ané, C. Ané, 2020, Bioinform..

The Role of Pollinator Shifts in the Floral Diversification of Iochroma (Solanaceae)

C. Ané, D. Baum, Stacey D. Smith, 2008, Evolution; international journal of organic evolution.

Accounting for within-species variation in continuous trait evolution on a phylogenetic network

C. Ané, P. Bastide, Jeffrey P. Rose, 2022, bioRxiv.

Bayesian species delimitation combining multiple genes and traits in a unified framework

Claudia R. Solís-Lemus, Claudia Solís-Lemus, Cécile Ané, 2015, Evolution; international journal of organic evolution.

Groves of Phylogenetic Trees

Oliver Eulenstein, Michael J. Sanderson, Cécile Ané, 2009 .

On the Identifiability of Phylogenetic Networks under a Pseudolikelihood model

Claudia R. Solís-Lemus, Claudia Solis-Lemus, Arrigo Coen, 2020, 2010.01758.

Evidence for hawkmoth pollination in the chiropterophilous African baobab (Adansonia digitata)

C. Ané, D. Baum, Nisa Karimi, 2021, Biotropica.